Rorug02G0553500

methyl-CpG-binding domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004967
Physical Location & Seq
Reverse (-)
68069318 .. 68072305
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0553500.1

Sequence Viewer

Length: 1173 bp
ATGAGCAACTTAGATCAGATCCAATACAAAGGCATGGGAGGTAGCAGTGATATAGAAAGGGGTGAAGTGGATGAAAGCGTTCAAGTTCATCTAGAACATAGAGCTATGACTGTTGAACATTGGAAAACAACCTTCAATACAGAGGTTTTGAACGCCAAATCACCTTTGCCTGCTACATGTTGCATCCTCAAAGTTCCCGAGGTGCTACGAGGACAAAAAGAGGAGGCATACAAACCTAACATAGTCTCAATCGGACCATTTCACAGAGACAGACAAGATGAGGACGACCCCATTTTCAACGTGCCTTGTATGCTCGAATATCTATACCATGATATTCTGTTACTCGAAAATCAGCTGCCTTGGTTTGTGCTCGAGTTTTTCTATGACCTAATTGAGGGTGGTCTGACTGGTCACCGTAATTCCCTCAGTAAATTGGTCATCGACTTCTTCAAAAATTCAGTGGCTGATCCTAACATTTTCAGCTACCTCAATCCCGAGTCTGATGATAAAATTCTTCATATACTTGATCTGATTAGAATTTCCCTCGTTGAAGGACTAGAAGACCCAAGTCCTCAGACGGAGGCGAGTACAAGCGATACATTTAAGTTGATCCGCCACTTGCCGCAGAGGATACCTAGTGCTACTGCTCTTTCAGAGGCAGGCGTTAAGTTTGAAAAGGTAAAGAGCCGCCCAGGTTGCATATTGAACATAACGTTCAAAAATGGCGTATTCACCATTCCTCATTTGGCTATCGATGAGAGGACAGGTCCTTTGTTCAGGAACCTTATGGCCTACGAGCAGTGCTATCACAGTTGCTTCCATAAGATAACATCCTACGCGTTTTTGATGGATAACCTCATCGATACGAGCAAGGATGTGGATCTTCTATGTGAGAAAGATATAATAGGCACCTTGTTGAGTGCTGATGATGCTTCGAAGTTCTTCAACGAGCTATACCATGACGCCACACTCTCTGAGTTCTACTACTTGGGACTCTGCGGAGAGGTGCAACAATATTACAAAGTACCATGGAACAGGTGGAGAGAGAAATTGAGACGTGATTATTTTGGCACACCATGGGCTACAATCTCCTTTTTTGCAGCTTTTGTCCTCACGGTCCTCACCTTCTTAGGAACCATATACACAATCCTGCAATACCATCATCCCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0001763 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005911 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0008327 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009889 GO:0009987 GO:0010016 GO:0010216 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0016043 GO:0016407 GO:0016410 GO:0016567 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034212 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048573 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0061733 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905393 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain DDT FYRC MBD PHD WHIM1 WSD

Protein Analysis

390

Amino Acids

44.82

Weight (kDa)

5.25

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 62 - 90 2.4e-06 Plant protein of unknown function
DUF247 PF03140 92 - 374 4.1e-78 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 908
AccII CGCG 1 cut(s) 839
AciI CCGC 4 cut(s) 613, 623, 688, 999
AclI AACGTT 1 cut(s) 713
AclWI GGATC 4 cut(s) 13, 461, 604, 888
AcsI RAATTY 3 cut(s) 454, 510, 537
AcyI GRCGYC 1 cut(s) 963
AfaI GTAC 2 cut(s) 589, 1026
AfiI CCNNNNNNNGG 1 cut(s) 394
AflIII ACRYGT 2 cut(s) 176, 837
AjiI CACGTC 1 cut(s) 1058
AjnI CCWGG 1 cut(s) 691
AluBI AGCT 6 cut(s) 104, 355, 483, 952, 1103, 1170
AluI AGCT 6 cut(s) 104, 355, 483, 952, 1103, 1170
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 3 cut(s) 250, 261, 1048
AlwI GGATC 4 cut(s) 13, 461, 604, 888
AlwNI CAGNNNCTG 1 cut(s) 464
Ama87I CYCGRG 3 cut(s) 197, 371, 494
AoxI GGCC 1 cut(s) 789
ApeKI GCWGC 2 cut(s) 355, 1100
ApoI RAATTY 3 cut(s) 454, 510, 537
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
Asp700I GAANNNNTTC 2 cut(s) 78, 941
AspS9I GGNCC 3 cut(s) 254, 767, 1117
AsuHPI GGTGA 5 cut(s) 74, 153, 404, 724, 1114
AsuII TTCGAA 1 cut(s) 935
AvaI CYCGRG 3 cut(s) 197, 371, 494
AvaII GGWCC 3 cut(s) 254, 767, 1117
BanI GGYRCC 1 cut(s) 908
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 342, 1112
BccI CCATC 2 cut(s) 841, 1167
BciT130I CCWGG 1 cut(s) 693
BciVI GTATCC 1 cut(s) 624
BcoDI GTCTC 3 cut(s) 250, 261, 1048
BfaI CTAG 3 cut(s) 92, 557, 636
BfuI GTATCC 1 cut(s) 624
BisI GCNGC 4 cut(s) 356, 623, 688, 1101
BlsI GCNGC 4 cut(s) 357, 624, 689, 1102
Bme1390I CCNGG 1 cut(s) 693
Bme18I GGWCC 3 cut(s) 254, 767, 1117
BmeT110I CYCGRG 3 cut(s) 197, 371, 494
BmgBI CACGTC 1 cut(s) 1058
BmgT120I GGNCC 3 cut(s) 254, 767, 1117
BmiI GGNNCC 3 cut(s) 782, 910, 1135
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 2 cut(s) 192, 919
BoxI GACNNNNGTC 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 567
Bpu14I TTCGAA 1 cut(s) 935
Bsa29I ATCGAT 2 cut(s) 753, 861
BsaBI GATNNNNATC 1 cut(s) 879
BsaHI GRCGYC 1 cut(s) 963
BsaJI CCNNGG 5 cut(s) 198, 359, 691, 1028, 1076
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 1 cut(s) 693
BseCI ATCGAT 2 cut(s) 753, 861
BseDI CCNNGG 5 cut(s) 198, 359, 691, 1028, 1076
BseGI GGATG 5 cut(s) 76, 183, 830, 880, 1162
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMII CTCAG 3 cut(s) 439, 587, 966
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 342, 1112
BseYI CCCAGC 1 cut(s) 1166
Bsh1236I CGCG 1 cut(s) 839
BshFI GGCC 1 cut(s) 791
BshNI GGYRCC 1 cut(s) 908
BshVI ATCGAT 2 cut(s) 753, 861
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 3 cut(s) 197, 371, 494
BslFI GGGAC 1 cut(s) 1005
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 3 cut(s) 250, 261, 1048
BsmBI CGTCTC 1 cut(s) 1048
BsmFI GGGAC 1 cut(s) 1005
BsnI GGCC 1 cut(s) 791
BsoBI CYCGRG 3 cut(s) 197, 371, 494
Bsp119I TTCGAA 1 cut(s) 935
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 6 cut(s) 13, 18, 466, 526, 609, 880
Bsp19I CCATGG 2 cut(s) 1028, 1076
BspACI CCGC 4 cut(s) 613, 623, 688, 999
BspANI GGCC 1 cut(s) 791
BspCNI CTCAG 3 cut(s) 438, 586, 967
BspDI ATCGAT 2 cut(s) 753, 861
BspFNI CGCG 1 cut(s) 839
BspLI GGNNCC 3 cut(s) 782, 910, 1135
BspPI GGATC 4 cut(s) 13, 461, 604, 888
BspT104I TTCGAA 1 cut(s) 935
BspT107I GGYRCC 1 cut(s) 908
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 5 cut(s) 198, 359, 691, 1028, 1076
BssMI GATC 6 cut(s) 13, 18, 466, 526, 609, 880
BssNI GRCGYC 1 cut(s) 963
BssT1I CCWWGG 3 cut(s) 359, 1028, 1076
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 4 cut(s) 112, 416, 812, 1117
BstACI GRCGYC 1 cut(s) 963
BstBI TTCGAA 1 cut(s) 935
BstC8I GCNNGC 2 cut(s) 171, 661
BstDEI CTNAG 5 cut(s) 10, 425, 573, 975, 1129
BstDSI CCRYGG 2 cut(s) 1028, 1076
BstEII GGTNACC 1 cut(s) 410
BstENI CCTNNNNNAGG 1 cut(s) 392
BstF5I GGATG 5 cut(s) 76, 183, 830, 880, 1162
BstFNI CGCG 1 cut(s) 839
BstKTI GATC 6 cut(s) 16, 21, 469, 529, 612, 883
BstMAI GTCTC 3 cut(s) 250, 261, 1048
BstMBI GATC 6 cut(s) 13, 18, 466, 526, 609, 880
BstMWI GCNNNNNNNGC 3 cut(s) 310, 696, 929
BstNI CCWGG 1 cut(s) 693
BstNSI RCATGY 1 cut(s) 180
BstPAI GACNNNNGTC 1 cut(s) 567
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 691
BstUI CGCG 1 cut(s) 839
BstV1I GCAGC 2 cut(s) 342, 1112
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 18, 880
BstYI RGATCY 2 cut(s) 18, 880
Bsu15I ATCGAT 2 cut(s) 753, 861
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 1 cut(s) 791
BsuTUI ATCGAT 2 cut(s) 753, 861
BtgI CCRYGG 2 cut(s) 1028, 1076
BtrI CACGTC 1 cut(s) 1058
BtsCI GGATG 5 cut(s) 76, 183, 830, 880, 1162
BtsI GCAGTG 2 cut(s) 52, 806
BtsIMutI CAGTG 3 cut(s) 52, 465, 806
Cac8I GCNNGC 2 cut(s) 171, 661
CaiI CAGNNNCTG 1 cut(s) 464
Cfr13I GGNCC 3 cut(s) 254, 767, 1117
ClaI ATCGAT 2 cut(s) 753, 861
CseI GACGC 1 cut(s) 971
Csp6I GTAC 2 cut(s) 588, 1025
CviAII CATG 6 cut(s) 34, 177, 329, 959, 1029, 1077
CviQI GTAC 2 cut(s) 588, 1025
DdeI CTNAG 5 cut(s) 10, 425, 573, 975, 1129
DpnI GATC 6 cut(s) 15, 20, 468, 528, 611, 882
DpnII GATC 6 cut(s) 13, 18, 466, 526, 609, 880
EciI GGCGGA 1 cut(s) 602
Eco130I CCWWGG 3 cut(s) 359, 1028, 1076
Eco47I GGWCC 3 cut(s) 254, 767, 1117
Eco88I CYCGRG 3 cut(s) 197, 371, 494
Eco91I GGTNACC 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 767
EcoO65I GGTNACC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 691
EcoT14I CCWWGG 3 cut(s) 359, 1028, 1076
ErhI CCWWGG 3 cut(s) 359, 1028, 1076
Esp3I CGTCTC 1 cut(s) 1048
FaeI CATG 6 cut(s) 37, 180, 332, 962, 1032, 1080
FaqI GGGAC 1 cut(s) 1005
FatI CATG 6 cut(s) 33, 176, 328, 958, 1028, 1076
Fnu4HI GCNGC 4 cut(s) 356, 623, 688, 1101
FokI GGATG 5 cut(s) 83, 170, 817, 887, 1149
Fsp4HI GCNGC 4 cut(s) 356, 623, 688, 1101
FspBI CTAG 3 cut(s) 92, 557, 636
GluI GCNGC 4 cut(s) 356, 623, 688, 1101
GsaI CCCAGC 1 cut(s) 1170
HaeIII GGCC 1 cut(s) 791
HgaI GACGC 1 cut(s) 971
Hin1I GRCGYC 1 cut(s) 963
Hin1II CATG 6 cut(s) 37, 180, 332, 962, 1032, 1080
HinfI GANTC 2 cut(s) 497, 993
HphI GGTGA 5 cut(s) 74, 153, 404, 724, 1114
Hpy188I TCNGA 8 cut(s) 18, 254, 405, 502, 531, 576, 655, 976
Hpy188III TCNNGA 4 cut(s) 92, 197, 494, 778
HpyAV CCTTC 3 cut(s) 142, 545, 1135
HpyCH4III ACNGT 4 cut(s) 112, 416, 812, 1117
HpyCH4IV ACGT 3 cut(s) 300, 713, 1057
HpyCH4V TGCA 5 cut(s) 183, 699, 1009, 1100, 1153
HpyF10VI GCNNNNNNNGC 3 cut(s) 310, 696, 929
HpyF3I CTNAG 5 cut(s) 10, 425, 573, 975, 1129
HpySE526I ACGT 3 cut(s) 300, 713, 1057
Hsp92I GRCGYC 1 cut(s) 963
Hsp92II CATG 6 cut(s) 37, 180, 332, 962, 1032, 1080
Kzo9I GATC 6 cut(s) 13, 18, 466, 526, 609, 880
LpnPI CCDG 9 cut(s) 183, 393, 645, 678, 705, 750, 763, 1021, 1163
Lsp1109I GCAGC 2 cut(s) 342, 1112
LweI GCATC 2 cut(s) 192, 919
MaeI CTAG 3 cut(s) 92, 557, 636
MaeII ACGT 3 cut(s) 300, 713, 1057
MaeIII GTNAC 2 cut(s) 339, 410
MalI GATC 6 cut(s) 15, 20, 468, 528, 611, 882
MboI GATC 6 cut(s) 13, 18, 466, 526, 609, 880
MboII GAAGA 5 cut(s) 439, 506, 572, 875, 934
MflI RGATCY 2 cut(s) 18, 880
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 7 cut(s) 390, 418, 431, 454, 510, 537, 1049
MluI ACGCGT 1 cut(s) 837
MlyI GAGTC 2 cut(s) 506, 987
MroXI GAANNNNTTC 2 cut(s) 78, 941
MseI TTAA 2 cut(s) 603, 666
MspA1I CMGCKG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 693
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 1 cut(s) 839
MwoI GCNNNNNNNGC 3 cut(s) 310, 696, 929
NcoI CCATGG 2 cut(s) 1028, 1076
NdeII GATC 6 cut(s) 13, 18, 466, 526, 609, 880
NlaIII CATG 6 cut(s) 37, 180, 332, 962, 1032, 1080
NlaIV GGNNCC 3 cut(s) 782, 910, 1135
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 1 cut(s) 180
NspV TTCGAA 1 cut(s) 935
PaeR7I CTCGAG 1 cut(s) 371
PciI ACATGT 1 cut(s) 176
PdmI GAANNNNTTC 2 cut(s) 78, 941
PkrI GCNGC 4 cut(s) 357, 624, 689, 1102
PleI GAGTC 2 cut(s) 505, 987
PpsI GAGTC 2 cut(s) 505, 987
PpuMI RGGWCCY 1 cut(s) 767
PscI ACATGT 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 713
Psp5II RGGWCCY 1 cut(s) 767
Psp6I CCWGG 1 cut(s) 691
PspEI GGTNACC 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 1166
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 3 cut(s) 782, 910, 1135
PspPI GGNCC 3 cut(s) 254, 767, 1117
PspPPI RGGWCCY 1 cut(s) 767
PspXI VCTCGAGB 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 2 cut(s) 18, 880
PvuII CAGCTG 1 cut(s) 355
RsaI GTAC 2 cut(s) 589, 1026
RsaNI GTAC 2 cut(s) 588, 1025
SaqAI TTAA 2 cut(s) 603, 666
SatI GCNGC 4 cut(s) 356, 623, 688, 1101
Sau3AI GATC 6 cut(s) 13, 18, 466, 526, 609, 880
Sau96I GGNCC 3 cut(s) 254, 767, 1117
SchI GAGTC 2 cut(s) 506, 987
ScrFI CCNGG 1 cut(s) 693
SduI GDGCHC 1 cut(s) 372
SfaNI GCATC 2 cut(s) 192, 919
Sfr274I CTCGAG 1 cut(s) 371
SfuI TTCGAA 1 cut(s) 935
SinI GGWCC 3 cut(s) 254, 767, 1117
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 7 cut(s) 390, 418, 431, 454, 510, 537, 1049
SsiI CCGC 4 cut(s) 613, 623, 688, 999
SspI AATATT 1 cut(s) 1016
SspMI CTAG 3 cut(s) 92, 557, 636
StyD4I CCNGG 1 cut(s) 691
StyI CCWWGG 3 cut(s) 359, 1028, 1076
TaaI ACNGT 4 cut(s) 112, 416, 812, 1117
TaiI ACGT 3 cut(s) 303, 716, 1060
TaqI TCGA 7 cut(s) 315, 345, 372, 441, 753, 861, 935
TasI AATT 7 cut(s) 390, 418, 431, 454, 510, 537, 1049
TatI WGTACW 1 cut(s) 587
TauI GCSGC 2 cut(s) 625, 690
Tru1I TTAA 2 cut(s) 603, 666
Tru9I TTAA 2 cut(s) 603, 666
TscAI CASTG 3 cut(s) 52, 465, 806
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 2 cut(s) 355, 1100
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 77, 87, 506
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 3 cut(s) 52, 465, 806
VpaK11BI GGWCC 3 cut(s) 254, 767, 1117
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 3 cut(s) 454, 510, 537
XbaI TCTAGA 1 cut(s) 91
XceI RCATGY 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 2 cut(s) 742, 1035
XhoI CTCGAG 1 cut(s) 371
XmnI GAANNNNTTC 2 cut(s) 78, 941
XspI CTAG 3 cut(s) 92, 557, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.