RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g38800 FvH4_3g38800 FvH4_3g38800 |
| malus_domestica | MD11G1072100.v1.1 |
| prunus_persica | Prupe.6G055800_v2.0.a1 |
| pyrus_communis | pycom04g08530 pycom11g06010 |
| rosa_chinensis | RchiOBHm_Chr5g0069981 |
| rosa_laevigata | RLG00000018167 RLG00000030052 RLG00000036111 |
| rosa_multiflora | Rmu_co8080984.1_g000001 Rmu_co8211894.1_g000002 Rmu_sc0005076.1_g000001 Rmu_sc0021441.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00011070 |
| rosa_rugosa | Rorug05G0401900 Rorug05G0401900 |
| rosa_samantha | Rh1AG439800 Rh1BG194500 Rh1DG222700 Rh4BG162700 Rh5AG458400 Rh5BG477100 Rh5CG176700 Rh5CG500800 Rh5DG489100 Rh7DG241300 |
| rosa_wichuraiana | Rw5G014670 Rw5G042790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 10, 338 |
| AatII | GACGTC | 2 cut(s) | 8, 636 |
| Acc65I | GGTACC | 1 cut(s) | 816 |
| AccB1I | GGYRCC | 1 cut(s) | 816 |
| AccBSI | CCGCTC | 2 cut(s) | 853, 880 |
| AccI | GTMKAC | 1 cut(s) | 2964 |
| AccII | CGCG | 3 cut(s) | 171, 248, 545 |
| AccIII | TCCGGA | 1 cut(s) | 350 |
| AclWI | GGATC | 2 cut(s) | 2238, 2948 |
| AcoI | YGGCCR | 2 cut(s) | 1233, 1287 |
| AcsI | RAATTY | 5 cut(s) | 781, 1195, 1974, 2109, 2358 |
| AcuI | CTGAAG | 1 cut(s) | 2679 |
| AcyI | GRCGYC | 3 cut(s) | 5, 189, 633 |
| AfaI | GTAC | 4 cut(s) | 337, 818, 1715, 1767 |
| AfeI | AGCGCT | 1 cut(s) | 570 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 920, 959, 1116, 2370, 2615 |
| AhlI | ACTAGT | 1 cut(s) | 3068 |
| AjiI | CACGTC | 2 cut(s) | 177, 2673 |
| AjnI | CCWGG | 5 cut(s) | 1444, 1800, 1864, 2186, 2936 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1965, 1997, 2394, 2426 |
| Alw21I | GWGCWC | 6 cut(s) | 210, 831, 1152, 1313, 2475, 2859 |
| Alw26I | GTCTC | 5 cut(s) | 37, 894, 2199, 2997, 3040 |
| Alw44I | GTGCAC | 1 cut(s) | 206 |
| AlwI | GGATC | 2 cut(s) | 2238, 2948 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 388, 2995 |
| Ama87I | CYCGRG | 3 cut(s) | 564, 932, 3117 |
| Aor13HI | TCCGGA | 1 cut(s) | 350 |
| Aor51HI | AGCGCT | 1 cut(s) | 570 |
| AoxI | GGCC | 5 cut(s) | 702, 710, 1233, 1287, 2381 |
| ApaLI | GTGCAC | 1 cut(s) | 206 |
| ApeKI | GCWGC | 9 cut(s) | 1517, 1623, 1694, 1832, 2252, 2540, 2585, 2789, 2832 |
| ApoI | RAATTY | 5 cut(s) | 781, 1195, 1974, 2109, 2358 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 618, 650 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 477, 1174, 2005, 2406, 2623 |
| Asp718I | GGTACC | 1 cut(s) | 816 |
| AspLEI | GCGC | 7 cut(s) | 80, 173, 250, 545, 571, 1405, 2355 |
| AspS9I | GGNCC | 5 cut(s) | 385, 642, 702, 711, 855 |
| AsuC2I | CCSGG | 4 cut(s) | 640, 736, 914, 2913 |
| AsuHPI | GGTGA | 5 cut(s) | 152, 157, 820, 935, 1024 |
| AsuII | TTCGAA | 2 cut(s) | 406, 747 |
| AvaI | CYCGRG | 3 cut(s) | 564, 932, 3117 |
| AvaII | GGWCC | 3 cut(s) | 385, 642, 855 |
| BaeGI | GKGCMC | 4 cut(s) | 210, 1872, 2678, 3124 |
| BalI | TGGCCA | 2 cut(s) | 1235, 1289 |
| BanI | GGYRCC | 1 cut(s) | 816 |
| BanII | GRGCYC | 3 cut(s) | 1313, 2448, 2859 |
| BauI | CACGAG | 1 cut(s) | 2773 |
| BbsI | GAAGAC | 5 cut(s) | 527, 756, 2399, 2629, 2709 |
| Bbv12I | GWGCWC | 6 cut(s) | 210, 831, 1152, 1313, 2475, 2859 |
| BbvI | GCAGC | 9 cut(s) | 1504, 1635, 1706, 1819, 2239, 2527, 2572, 2776, 2844 |
| BccI | CCATC | 5 cut(s) | 348, 733, 1477, 1754, 2744 |
| BceAI | ACGGC | 4 cut(s) | 725, 757, 2396, 2867 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2010, 2044 |
| BciT130I | CCWGG | 5 cut(s) | 1446, 1802, 1866, 2188, 2938 |
| BciVI | GTATCC | 1 cut(s) | 1798 |
| BcnI | CCSGG | 4 cut(s) | 640, 736, 914, 2913 |
| BcoDI | GTCTC | 5 cut(s) | 37, 894, 2199, 2997, 3040 |
| BcuI | ACTAGT | 1 cut(s) | 3068 |
| BfmI | CTRYAG | 2 cut(s) | 491, 2790 |
| BfoI | RGCGCY | 2 cut(s) | 572, 2356 |
| BfuI | GTATCC | 1 cut(s) | 1798 |
| BglII | AGATCT | 1 cut(s) | 285 |
| BlpI | GCTNAGC | 1 cut(s) | 1226 |
| Bme1390I | CCNGG | 9 cut(s) | 640, 736, 914, 1446, 1802, 1866, 2188, 2913, 2938 |
| Bme18I | GGWCC | 3 cut(s) | 385, 642, 855 |
| BmeT110I | CYCGRG | 3 cut(s) | 564, 932, 3117 |
| BmgBI | CACGTC | 2 cut(s) | 177, 2673 |
| BmgT120I | GGNCC | 5 cut(s) | 385, 642, 702, 711, 855 |
| BmiI | GGNNCC | 3 cut(s) | 643, 818, 2438 |
| BmrFI | CCNGG | 9 cut(s) | 640, 736, 914, 1446, 1802, 1866, 2188, 2913, 2938 |
| BmrI | ACTGGG | 4 cut(s) | 709, 815, 1104, 1882 |
| BmuI | ACTGGG | 4 cut(s) | 709, 815, 1104, 1882 |
| BpiI | GAAGAC | 5 cut(s) | 527, 756, 2399, 2629, 2709 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2196, 2228, 3037, 3069 |
| BpmI | CTGGAG | 5 cut(s) | 128, 412, 908, 962, 2812 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2174 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1226 |
| Bpu14I | TTCGAA | 2 cut(s) | 406, 747 |
| BpuEI | CTTGAG | 4 cut(s) | 1370, 1402, 2462, 3039 |
| BpuMI | CCSGG | 4 cut(s) | 640, 736, 914, 2913 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 189, 633 |
| BsaI | GGTCTC | 1 cut(s) | 894 |
| BsaJI | CCNNGG | 6 cut(s) | 276, 1236, 1865, 2305, 2614, 2912 |
| BsaWI | WCCGGW | 1 cut(s) | 350 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 293, 323, 1058, 1088, 2789, 2819 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 920, 959, 1116, 2370, 2615 |
| Bse1I | ACTGG | 6 cut(s) | 704, 821, 875, 945, 1110, 1877 |
| Bse3DI | GCAATG | 1 cut(s) | 3037 |
| BseAI | TCCGGA | 1 cut(s) | 350 |
| BseBI | CCWGG | 5 cut(s) | 1446, 1802, 1866, 2188, 2938 |
| BseDI | CCNNGG | 6 cut(s) | 276, 1236, 1865, 2305, 2614, 2912 |
| BseGI | GGATG | 7 cut(s) | 359, 744, 1246, 1441, 1746, 1903, 2334 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 920, 959, 1116, 2370, 2615 |
| BseMI | GCAATG | 1 cut(s) | 3037 |
| BseMII | CTCAG | 5 cut(s) | 576, 1110, 1180, 1326, 2154 |
| BseNI | ACTGG | 6 cut(s) | 704, 821, 875, 945, 1110, 1877 |
| BseRI | GAGGAG | 4 cut(s) | 16, 356, 995, 2126 |
| BseSI | GKGCMC | 4 cut(s) | 210, 1872, 2678, 3124 |
| BseXI | GCAGC | 9 cut(s) | 1504, 1635, 1706, 1819, 2239, 2527, 2572, 2776, 2844 |
| BseYI | CCCAGC | 2 cut(s) | 968, 1136 |
| BsgI | GTGCAG | 1 cut(s) | 2221 |
| Bsh1236I | CGCG | 3 cut(s) | 171, 248, 545 |
| Bsh1285I | CGRYCG | 3 cut(s) | 334, 342, 898 |
| BshFI | GGCC | 5 cut(s) | 704, 712, 1235, 1289, 2383 |
| BshNI | GGYRCC | 1 cut(s) | 816 |
| BsiEI | CGRYCG | 3 cut(s) | 334, 342, 898 |
| BsiHKAI | GWGCWC | 6 cut(s) | 210, 831, 1152, 1313, 2475, 2859 |
| BsiHKCI | CYCGRG | 3 cut(s) | 564, 932, 3117 |
| BsiSI | CCGG | 6 cut(s) | 126, 351, 639, 735, 914, 2912 |
| BsiWI | CGTACG | 1 cut(s) | 335 |
| BslFI | GGGAC | 3 cut(s) | 1204, 1945, 1996 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 920, 959, 1116, 2370, 2615 |
| BsmAI | GTCTC | 5 cut(s) | 37, 894, 2199, 2997, 3040 |
| BsmBI | CGTCTC | 1 cut(s) | 37 |
| BsmFI | GGGAC | 3 cut(s) | 1204, 1945, 1996 |
| BsmI | GAATGC | 1 cut(s) | 1138 |
| BsnI | GGCC | 5 cut(s) | 704, 712, 1235, 1289, 2383 |
| Bso31I | GGTCTC | 1 cut(s) | 894 |
| BsoBI | CYCGRG | 3 cut(s) | 564, 932, 3117 |
| Bsp119I | TTCGAA | 2 cut(s) | 406, 747 |
| Bsp13I | TCCGGA | 1 cut(s) | 350 |
| Bsp1407I | TGTACA | 1 cut(s) | 1713 |
| Bsp143I | GATC | 8 cut(s) | 285, 400, 414, 421, 612, 2243, 2752, 2940 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1226 |
| Bsp19I | CCATGG | 1 cut(s) | 2614 |
| BspANI | GGCC | 5 cut(s) | 704, 712, 1235, 1289, 2383 |
| BspCNI | CTCAG | 5 cut(s) | 577, 1109, 1179, 1325, 2153 |
| BspEI | TCCGGA | 1 cut(s) | 350 |
| BspFNI | CGCG | 3 cut(s) | 171, 248, 545 |
| BspLI | GGNNCC | 3 cut(s) | 643, 818, 2438 |
| BspMAI | CTGCAG | 1 cut(s) | 2794 |
| BspPI | GGATC | 2 cut(s) | 2238, 2948 |
| BspQI | GCTCTTC | 2 cut(s) | 1684, 2659 |
| BspT104I | TTCGAA | 2 cut(s) | 406, 747 |
| BspT107I | GGYRCC | 1 cut(s) | 816 |
| BspTNI | GGTCTC | 1 cut(s) | 894 |
| BsrBI | CCGCTC | 2 cut(s) | 853, 880 |
| BsrDI | GCAATG | 1 cut(s) | 3037 |
| BsrGI | TGTACA | 1 cut(s) | 1713 |
| BsrI | ACTGG | 6 cut(s) | 704, 821, 875, 945, 1110, 1877 |
| BssECI | CCNNGG | 6 cut(s) | 276, 1236, 1865, 2305, 2614, 2912 |
| BssMI | GATC | 8 cut(s) | 285, 400, 414, 421, 612, 2243, 2752, 2940 |
| BssNI | GRCGYC | 3 cut(s) | 5, 189, 633 |
| BssSI | CACGAG | 1 cut(s) | 2773 |
| BssT1I | CCWWGG | 4 cut(s) | 276, 1236, 2305, 2614 |
| Bst2BI | CACGAG | 1 cut(s) | 2773 |
| Bst2UI | CCWGG | 5 cut(s) | 1446, 1802, 1866, 2188, 2938 |
| Bst4CI | ACNGT | 8 cut(s) | 335, 340, 896, 1175, 1713, 2708, 2805, 3081 |
| Bst6I | CTCTTC | 2 cut(s) | 1684, 2659 |
| BstACI | GRCGYC | 3 cut(s) | 5, 189, 633 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1909 |
| BstAUI | TGTACA | 1 cut(s) | 1713 |
| BstBI | TTCGAA | 2 cut(s) | 406, 747 |
| BstC8I | GCNNGC | 9 cut(s) | 66, 360, 444, 1699, 1703, 1707, 2257, 2385, 2720 |
| BstDSI | CCRYGG | 1 cut(s) | 2614 |
| BstF5I | GGATG | 7 cut(s) | 359, 744, 1246, 1441, 1746, 1903, 2334 |
| BstFNI | CGCG | 3 cut(s) | 171, 248, 545 |
| BstH2I | RGCGCY | 2 cut(s) | 572, 2356 |
| BstHHI | GCGC | 7 cut(s) | 80, 173, 250, 545, 571, 1405, 2355 |
| BstKTI | GATC | 8 cut(s) | 288, 403, 417, 424, 615, 2246, 2755, 2943 |
| BstMAI | GTCTC | 5 cut(s) | 37, 894, 2199, 2997, 3040 |
| BstMBI | GATC | 8 cut(s) | 285, 400, 414, 421, 612, 2243, 2752, 2940 |
| BstMCI | CGRYCG | 3 cut(s) | 334, 342, 898 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 126, 731, 1678, 1909, 2719, 2798, 3059 |
| BstNI | CCWGG | 5 cut(s) | 1446, 1802, 1866, 2188, 2938 |
| BstNSI | RCATGY | 3 cut(s) | 2259, 2398, 3053 |
| BstSCI | CCNGG | 9 cut(s) | 638, 734, 912, 1444, 1800, 1864, 2186, 2911, 2936 |
| BstSFI | CTRYAG | 2 cut(s) | 491, 2790 |
| BstSLI | GKGCMC | 4 cut(s) | 210, 1872, 2678, 3124 |
| BstUI | CGCG | 3 cut(s) | 171, 248, 545 |
| BstV1I | GCAGC | 9 cut(s) | 1504, 1635, 1706, 1819, 2239, 2527, 2572, 2776, 2844 |
| BstV2I | GAAGAC | 5 cut(s) | 527, 756, 2399, 2629, 2709 |
| BstX2I | RGATCY | 2 cut(s) | 285, 2243 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1872 |
| BstYI | RGATCY | 2 cut(s) | 285, 2243 |
| BsuI | GTATCC | 1 cut(s) | 1798 |
| BsuRI | GGCC | 5 cut(s) | 704, 712, 1235, 1289, 2383 |
| BtgI | CCRYGG | 1 cut(s) | 2614 |
| BtgZI | GCGATG | 1 cut(s) | 165 |
| BtrI | CACGTC | 2 cut(s) | 177, 2673 |
| BtsCI | GGATG | 7 cut(s) | 359, 744, 1246, 1441, 1746, 1903, 2334 |
| BtsI | GCAGTG | 3 cut(s) | 540, 2799, 2853 |
| BtsIMutI | CAGTG | 8 cut(s) | 540, 828, 938, 1709, 1870, 2799, 2801, 2853 |
| Cac8I | GCNNGC | 9 cut(s) | 66, 360, 444, 1699, 1703, 1707, 2257, 2385, 2720 |
| CaiI | CAGNNNCTG | 2 cut(s) | 388, 2995 |
| CfoI | GCGC | 7 cut(s) | 80, 173, 250, 545, 571, 1405, 2355 |
| Cfr13I | GGNCC | 5 cut(s) | 385, 642, 702, 711, 855 |
| CpoI | CGGWCCG | 1 cut(s) | 855 |
| CseI | GACGC | 3 cut(s) | 197, 1947, 2658 |
| Csp6I | GTAC | 4 cut(s) | 336, 817, 1714, 1766 |
| CspI | CGGWCCG | 1 cut(s) | 855 |
| CviQI | GTAC | 4 cut(s) | 336, 817, 1714, 1766 |
| DpnI | GATC | 8 cut(s) | 287, 402, 416, 423, 614, 2245, 2754, 2942 |
| DpnII | GATC | 8 cut(s) | 285, 400, 414, 421, 612, 2243, 2752, 2940 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 10, 338 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 10, 338 |
| EaeI | YGGCCR | 2 cut(s) | 1233, 1287 |
| Eam1104I | CTCTTC | 2 cut(s) | 1684, 2659 |
| EarI | CTCTTC | 2 cut(s) | 1684, 2659 |
| Ecl136II | GAGCTC | 2 cut(s) | 1311, 2857 |
| Eco130I | CCWWGG | 4 cut(s) | 276, 1236, 2305, 2614 |
| Eco24I | GRGCYC | 3 cut(s) | 1313, 2448, 2859 |
| Eco31I | GGTCTC | 1 cut(s) | 894 |
| Eco47I | GGWCC | 3 cut(s) | 385, 642, 855 |
| Eco47III | AGCGCT | 1 cut(s) | 570 |
| Eco53kI | GAGCTC | 2 cut(s) | 1311, 2857 |
| Eco57I | CTGAAG | 1 cut(s) | 2679 |
| Eco88I | CYCGRG | 3 cut(s) | 564, 932, 3117 |
| EcoICRI | GAGCTC | 2 cut(s) | 1311, 2857 |
| EcoO109I | RGGNCCY | 1 cut(s) | 385 |
| EcoRI | GAATTC | 1 cut(s) | 2109 |
| EcoRII | CCWGG | 5 cut(s) | 1444, 1800, 1864, 2186, 2936 |
| EcoT14I | CCWWGG | 4 cut(s) | 276, 1236, 2305, 2614 |
| EcoT22I | ATGCAT | 1 cut(s) | 2261 |
| EcoT38I | GRGCYC | 3 cut(s) | 1313, 2448, 2859 |
| ErhI | CCWWGG | 4 cut(s) | 276, 1236, 2305, 2614 |
| Esp3I | CGTCTC | 1 cut(s) | 37 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2394, 2426 |
| FaqI | GGGAC | 3 cut(s) | 1204, 1945, 1996 |
| FauI | CCCGC | 1 cut(s) | 176 |
| FblI | GTMKAC | 1 cut(s) | 2964 |
| FokI | GGATG | 7 cut(s) | 366, 751, 1253, 1428, 1733, 1890, 2341 |
| FriOI | GRGCYC | 3 cut(s) | 1313, 2448, 2859 |
| GlaI | GCGC | 7 cut(s) | 79, 172, 249, 544, 570, 1404, 2354 |
| GsaI | CCCAGC | 2 cut(s) | 972, 1140 |
| GsuI | CTGGAG | 5 cut(s) | 128, 412, 908, 962, 2812 |
| HaeII | RGCGCY | 2 cut(s) | 572, 2356 |
| HaeIII | GGCC | 5 cut(s) | 704, 712, 1235, 1289, 2383 |
| HapII | CCGG | 6 cut(s) | 126, 351, 639, 735, 914, 2912 |
| HgaI | GACGC | 3 cut(s) | 197, 1947, 2658 |
| HhaI | GCGC | 7 cut(s) | 80, 173, 250, 545, 571, 1405, 2355 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 189, 633 |
| Hin6I | GCGC | 7 cut(s) | 78, 171, 248, 543, 569, 1403, 2353 |
| HinP1I | GCGC | 7 cut(s) | 78, 171, 248, 543, 569, 1403, 2353 |
| HincII | GTYRAC | 3 cut(s) | 798, 991, 2965 |
| HindII | GTYRAC | 3 cut(s) | 798, 991, 2965 |
| HindIII | AAGCTT | 3 cut(s) | 1368, 1699, 2123 |
| HpaII | CCGG | 6 cut(s) | 126, 351, 639, 735, 914, 2912 |
| HphI | GGTGA | 5 cut(s) | 152, 157, 820, 935, 1024 |
| Hpy166II | GTNNAC | 9 cut(s) | 46, 208, 763, 798, 991, 2648, 2808, 2851, 2965 |
| Hpy8I | GTNNAC | 9 cut(s) | 46, 208, 763, 798, 991, 2648, 2808, 2851, 2965 |
| HpyCH4III | ACNGT | 8 cut(s) | 335, 340, 896, 1175, 1713, 2708, 2805, 3081 |
| HpyCH4IV | ACGT | 6 cut(s) | 5, 176, 633, 759, 2462, 2672 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 126, 731, 1678, 1909, 2719, 2798, 3059 |
| HpySE526I | ACGT | 6 cut(s) | 5, 176, 633, 759, 2462, 2672 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 189, 633 |
| HspAI | GCGC | 7 cut(s) | 78, 171, 248, 543, 569, 1403, 2353 |
| Kpn2I | TCCGGA | 1 cut(s) | 350 |
| KpnI | GGTACC | 1 cut(s) | 820 |
| Kzo9I | GATC | 8 cut(s) | 285, 400, 414, 421, 612, 2243, 2752, 2940 |
| LguI | GCTCTTC | 2 cut(s) | 1684, 2659 |
| LmnI | GCTCC | 4 cut(s) | 834, 1308, 2695, 2917 |
| Lsp1109I | GCAGC | 9 cut(s) | 1504, 1635, 1706, 1819, 2239, 2527, 2572, 2776, 2844 |
| MaeII | ACGT | 6 cut(s) | 5, 176, 633, 759, 2462, 2672 |
| MaeIII | GTNAC | 8 cut(s) | 150, 457, 916, 936, 1344, 2458, 2577, 2729 |
| MalI | GATC | 8 cut(s) | 287, 402, 416, 423, 614, 2245, 2754, 2942 |
| MbiI | CCGCTC | 2 cut(s) | 853, 880 |
| MboI | GATC | 8 cut(s) | 285, 400, 414, 421, 612, 2243, 2752, 2940 |
| MfeI | CAATTG | 1 cut(s) | 2864 |
| MflI | RGATCY | 2 cut(s) | 285, 2243 |
| MlsI | TGGCCA | 2 cut(s) | 1235, 1289 |
| MluNI | TGGCCA | 2 cut(s) | 1235, 1289 |
| MlyI | GAGTC | 6 cut(s) | 41, 505, 2036, 2127, 2332, 2970 |
| MmeI | TCCRAC | 6 cut(s) | 258, 636, 660, 1056, 1479, 2379 |
| Mox20I | TGGCCA | 2 cut(s) | 1235, 1289 |
| Mph1103I | ATGCAT | 1 cut(s) | 2261 |
| MroI | TCCGGA | 1 cut(s) | 350 |
| MroXI | GAANNNNTTC | 5 cut(s) | 477, 1174, 2005, 2406, 2623 |
| MscI | TGGCCA | 2 cut(s) | 1235, 1289 |
| MseI | TTAA | 7 cut(s) | 777, 864, 1158, 1380, 2064, 2121, 3021 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3030 |
| Msp20I | TGGCCA | 2 cut(s) | 1235, 1289 |
| MspA1I | CMGCKG | 2 cut(s) | 148, 2713 |
| MspI | CCGG | 6 cut(s) | 126, 351, 639, 735, 914, 2912 |
| MspR9I | CCNGG | 9 cut(s) | 640, 736, 914, 1446, 1802, 1866, 2188, 2913, 2938 |
| MunI | CAATTG | 1 cut(s) | 2864 |
| Mva1269I | GAATGC | 1 cut(s) | 1138 |
| MvaI | CCWGG | 5 cut(s) | 1446, 1802, 1866, 2188, 2938 |
| MvnI | CGCG | 3 cut(s) | 171, 248, 545 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 126, 731, 1678, 1909, 2719, 2798, 3059 |
| NciI | CCSGG | 4 cut(s) | 640, 736, 914, 2913 |
| NcoI | CCATGG | 1 cut(s) | 2614 |
| NdeII | GATC | 8 cut(s) | 285, 400, 414, 421, 612, 2243, 2752, 2940 |
| NlaIV | GGNNCC | 3 cut(s) | 643, 818, 2438 |
| NmeAIII | GCCGAG | 2 cut(s) | 552, 701 |
| NmuCI | GTSAC | 4 cut(s) | 150, 916, 936, 2577 |
| NsiI | ATGCAT | 1 cut(s) | 2261 |
| NspI | RCATGY | 3 cut(s) | 2259, 2398, 3053 |
| NspV | TTCGAA | 2 cut(s) | 406, 747 |
| PaeI | GCATGC | 1 cut(s) | 2259 |
| PaeR7I | CTCGAG | 1 cut(s) | 564 |
| PciSI | GCTCTTC | 2 cut(s) | 1684, 2659 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 11, 366, 515, 753 |
| PctI | GAATGC | 1 cut(s) | 1138 |
| PdmI | GAANNNNTTC | 5 cut(s) | 477, 1174, 2005, 2406, 2623 |
| PfeI | GAWTC | 8 cut(s) | 225, 320, 589, 667, 1006, 1757, 1919, 2594 |
| Pfl23II | CGTACG | 1 cut(s) | 335 |
| PflFI | GACNNNGTC | 1 cut(s) | 1571 |
| PleI | GAGTC | 6 cut(s) | 41, 505, 2035, 2127, 2332, 2969 |
| PpsI | GAGTC | 6 cut(s) | 41, 505, 2035, 2127, 2332, 2969 |
| PpuMI | RGGWCCY | 1 cut(s) | 385 |
| Psp124BI | GAGCTC | 2 cut(s) | 1313, 2859 |
| Psp5II | RGGWCCY | 1 cut(s) | 385 |
| Psp6I | CCWGG | 5 cut(s) | 1444, 1800, 1864, 2186, 2936 |
| PspFI | CCCAGC | 2 cut(s) | 968, 1136 |
| PspGI | CCWGG | 5 cut(s) | 1444, 1800, 1864, 2186, 2936 |
| PspLI | CGTACG | 1 cut(s) | 335 |
| PspN4I | GGNNCC | 3 cut(s) | 643, 818, 2438 |
| PspPI | GGNCC | 5 cut(s) | 385, 642, 702, 711, 855 |
| PspPPI | RGGWCCY | 1 cut(s) | 385 |
| PspXI | VCTCGAGB | 1 cut(s) | 564 |
| PstI | CTGCAG | 1 cut(s) | 2794 |
| PstNI | CAGNNNCTG | 2 cut(s) | 388, 2995 |
| PsuI | RGATCY | 2 cut(s) | 285, 2243 |
| PsyI | GACNNNGTC | 1 cut(s) | 1571 |
| PvuII | CAGCTG | 2 cut(s) | 148, 2713 |
| RsaI | GTAC | 4 cut(s) | 337, 818, 1715, 1767 |
| RsaNI | GTAC | 4 cut(s) | 336, 817, 1714, 1766 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3030 |
| Rsr2I | CGGWCCG | 1 cut(s) | 855 |
| RsrII | CGGWCCG | 1 cut(s) | 855 |
| SacI | GAGCTC | 2 cut(s) | 1313, 2859 |
| SalI | GTCGAC | 1 cut(s) | 2963 |
| SapI | GCTCTTC | 2 cut(s) | 1684, 2659 |
| SaqAI | TTAA | 7 cut(s) | 777, 864, 1158, 1380, 2064, 2121, 3021 |
| Sau3AI | GATC | 8 cut(s) | 285, 400, 414, 421, 612, 2243, 2752, 2940 |
| Sau96I | GGNCC | 5 cut(s) | 385, 642, 702, 711, 855 |
| SchI | GAGTC | 6 cut(s) | 41, 505, 2036, 2127, 2332, 2970 |
| ScrFI | CCNGG | 9 cut(s) | 640, 736, 914, 1446, 1802, 1866, 2188, 2913, 2938 |
| SfcI | CTRYAG | 2 cut(s) | 491, 2790 |
| Sfr274I | CTCGAG | 1 cut(s) | 564 |
| SfuI | TTCGAA | 2 cut(s) | 406, 747 |
| SinI | GGWCC | 3 cut(s) | 385, 642, 855 |
| SlaI | CTCGAG | 1 cut(s) | 564 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3030 |
| SmlI | CTYRAG | 5 cut(s) | 564, 1349, 1417, 2441, 3054 |
| SmoI | CTYRAG | 5 cut(s) | 564, 1349, 1417, 2441, 3054 |
| SpeI | ACTAGT | 1 cut(s) | 3068 |
| SphI | GCATGC | 1 cut(s) | 2259 |
| SspI | AATATT | 1 cut(s) | 2955 |
| SstI | GAGCTC | 2 cut(s) | 1313, 2859 |
| StyD4I | CCNGG | 9 cut(s) | 638, 734, 912, 1444, 1800, 1864, 2186, 2911, 2936 |
| StyI | CCWWGG | 4 cut(s) | 276, 1236, 2305, 2614 |
| TaaI | ACNGT | 8 cut(s) | 335, 340, 896, 1175, 1713, 2708, 2805, 3081 |
| TaiI | ACGT | 6 cut(s) | 8, 179, 636, 762, 2465, 2675 |
| TatI | WGTACW | 2 cut(s) | 1713, 1765 |
| TauI | GCSGC | 3 cut(s) | 245, 248, 1523 |
| TfiI | GAWTC | 8 cut(s) | 225, 320, 589, 667, 1006, 1757, 1919, 2594 |
| Tru1I | TTAA | 7 cut(s) | 777, 864, 1158, 1380, 2064, 2121, 3021 |
| Tru9I | TTAA | 7 cut(s) | 777, 864, 1158, 1380, 2064, 2121, 3021 |
| TscAI | CASTG | 8 cut(s) | 540, 828, 945, 1716, 1877, 2799, 2808, 2853 |
| TseFI | GTSAC | 4 cut(s) | 150, 916, 936, 2577 |
| TseI | GCWGC | 9 cut(s) | 1517, 1623, 1694, 1832, 2252, 2540, 2585, 2789, 2832 |
| Tsp45I | GTSAC | 4 cut(s) | 150, 916, 936, 2577 |
| TspDTI | ATGAA | 8 cut(s) | 452, 470, 962, 1257, 2102, 2304, 2629, 2887 |
| TspGWI | ACGGA | 6 cut(s) | 19, 193, 280, 476, 679, 783 |
| TspRI | CASTG | 8 cut(s) | 540, 828, 945, 1716, 1877, 2799, 2808, 2853 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1571 |
| VneI | GTGCAC | 1 cut(s) | 206 |
| VpaK11BI | GGWCC | 3 cut(s) | 385, 642, 855 |
| XapI | RAATTY | 5 cut(s) | 781, 1195, 1974, 2109, 2358 |
| XbaI | TCTAGA | 1 cut(s) | 1729 |
| XceI | RCATGY | 3 cut(s) | 2259, 2398, 3053 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1994, 2363 |
| XhoI | CTCGAG | 1 cut(s) | 564 |
| XmiI | GTMKAC | 1 cut(s) | 2964 |
| XmnI | GAANNNNTTC | 5 cut(s) | 477, 1174, 2005, 2406, 2623 |
| ZraI | GACGTC | 2 cut(s) | 6, 634 |
| Zsp2I | ATGCAT | 1 cut(s) | 2261 |