Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005186

Physical Location & Seq

Genomic Coordinates Forward (+)

26323156 .. 26324199

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCCTGGGAGCCTTGCCGAATGTTTGGGTCGAAGAAGAAGAGGGACATCGCCGCCGACCTCAACGCTGACCTCAAAACGATGTCATATTACTCCAAAGGCAAAATCTTCGTCCTCATCCACTGCCTCTCCCTCTGCAAATCCCTCAACGAAAACACTGTCGCCGTCTCCGGCTGGTTGGCCCTCCTCGACTCCGCCGTCGACGACCTCCCCGATCTCTGCAAAAAAATCACCGATCTCTCCAGAGACATGAAGCAAGCTCAATTCAAAGTCACAGAGAACGAAGAGAGAACTGATTTGGACCAGGCCGATCCCGTCATGGCGAAGCAGACGGCCATCATCCATAGAGGACGTCAGCGACATGGAAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

125

Amino Acids

14.04

Weight (kDa)

7.67

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005186)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38800 FvH4_3g38800 FvH4_3g38800
malus_domestica	MD11G1072100.v1.1
prunus_persica	Prupe.6G055800_v2.0.a1
pyrus_communis	pycom04g08530 pycom11g06010
rosa_chinensis	RchiOBHm_Chr5g0069981
rosa_laevigata	RLG00000018167 RLG00000030052 RLG00000036111
rosa_multiflora	Rmu_co8080984.1_g000001 Rmu_co8211894.1_g000002 Rmu_sc0005076.1_g000001 Rmu_sc0021441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011070
rosa_rugosa	Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1AG439800 Rh1BG194500 Rh1DG222700 Rh4BG162700 Rh5AG458400 Rh5BG477100 Rh5CG176700 Rh5CG500800 Rh5DG489100 Rh7DG241300
rosa_wichuraiana	Rw5G014670 Rw5G042790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AatII	GACGTC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	2 cut(s)	54, 195
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	5, 303
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	172, 240
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	4 cut(s)	3, 180, 306, 333
ArsI	GACNNNNNNTTYG	4 cut(s)	96, 128, 144, 176
AspS9I	GGNCC	2 cut(s)	181, 301
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	301
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	3 cut(s)	149, 182, 348
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	2 cut(s)	7, 305
BcoDI	GTCTC	2 cut(s)	172, 240
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	7, 305
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	181, 301
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	7, 305
BpmI	CTGGAG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
BseBI	CCWGG	2 cut(s)	7, 305
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	117, 339
BseRI	GAGGAG	1 cut(s)	176
BshFI	GGCC	4 cut(s)	5, 182, 308, 335
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	172, 240
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	5, 182, 308, 335
Bsp143I	GATC	3 cut(s)	214, 235, 310
BspACI	CCGC	2 cut(s)	54, 195
BspANI	GGCC	4 cut(s)	5, 182, 308, 335
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	3 cut(s)	214, 235, 310
BssNI	GRCGYC	1 cut(s)	352
Bst2UI	CCWGG	2 cut(s)	7, 305
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	35, 279
BstACI	GRCGYC	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	117, 339
BstKTI	GATC	3 cut(s)	217, 238, 313
BstMAI	GTCTC	2 cut(s)	172, 240
BstMBI	GATC	3 cut(s)	214, 235, 310
BstNI	CCWGG	2 cut(s)	7, 305
BstSCI	CCNGG	2 cut(s)	5, 303
BsuRI	GGCC	4 cut(s)	5, 182, 308, 335
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	117, 339
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	121, 156
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	181, 301
CviAII	CATG	3 cut(s)	250, 319, 362
CviJI	RGCY	7 cut(s)	5, 13, 174, 182, 260, 308, 335
CviKI_1	RGCY	7 cut(s)	5, 13, 174, 182, 260, 308, 335
DpnI	GATC	3 cut(s)	216, 237, 312
DpnII	GATC	3 cut(s)	214, 235, 310
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	35, 279
EarI	CTCTTC	2 cut(s)	35, 279
EciI	GGCGGA	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	5, 303
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	3 cut(s)	253, 322, 365
FaiI	YATR	5 cut(s)	88, 251, 320, 345, 363
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	249, 318, 361
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	104, 326
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	226
HaeIII	GGCC	4 cut(s)	5, 182, 308, 335
HapII	CCGG	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	352
Hin1II	CATG	3 cut(s)	253, 322, 365
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	2 cut(s)	203, 206
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	138, 222
HpySE526I	ACGT	1 cut(s)	352
Hsp92I	GRCGYC	1 cut(s)	352
Hsp92II	CATG	3 cut(s)	253, 322, 365
Kzo9I	GATC	3 cut(s)	214, 235, 310
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	6 cut(s)	19, 160, 184, 256, 290, 317
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	216, 237, 312
MboI	GATC	3 cut(s)	214, 235, 310
MboII	GAAGA	5 cut(s)	46, 49, 52, 100, 296
MluCI	AATT	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	7, 305
MvaI	CCWGG	2 cut(s)	7, 305
NdeII	GATC	3 cut(s)	214, 235, 310
NlaIII	CATG	3 cut(s)	253, 322, 365
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 210
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	5, 303
PspGI	CCWGG	2 cut(s)	5, 303
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	2 cut(s)	181, 301
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	3 cut(s)	214, 235, 310
Sau96I	GGNCC	2 cut(s)	181, 301
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	7, 305
SetI	ASST	5 cut(s)	63, 75, 210, 262, 355
SgrDI	CGTCGACG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	2 cut(s)	54, 195
StyD4I	CCNGG	2 cut(s)	5, 303
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	3 cut(s)	32, 189, 201
TasI	AATT	1 cut(s)	263
TauI	GCSGC	1 cut(s)	56
TscAI	CASTG	2 cut(s)	128, 163
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	128, 163
VpaK11BI	GGWCC	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	201
ZraI	GACGTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.