Rmu_co8080984.1_g000001

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8080984.1
OG0005186
Physical Location & Seq
Forward (+)
171 .. 584
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8080984.1_g000001.1.cds

Sequence Viewer

Length: 414 bp
atgacgtcatccaccgccgcctcctccaccttgctggactccatccacacctccctcgccgacctctgcgcccctcactacgaccactcctccttcgacccccctcgccgcttctccgccttcgcccaccgcctccagctcgccctcacccacctcacccgctccacctcctcacccgacgccgccttcccgccttccgtcctcaccgccctcaggggcatcgccgccgacctcagcgccgccgtcaaaacgatgtcgtcttactccaaaggcaaaatcttcgtcctcatccactgcccctccctctgcaaatccctcaacgaaaacaccgtcgccgtctccggctggctcgccctcctcgacggcggagtcgaggacctccccgatctccgcaaaaaaatcgccgatctctcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

138

Amino Acids

14.67

Weight (kDa)

7.0

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AatII GACGTC 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 162
AcyI GRCGYC 2 cut(s) 5, 180
AfiI CCNNNNNNNGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 343
ArsI GACNNNNNNTTYG 4 cut(s) 267, 299, 315, 347
AspLEI GCGC 2 cut(s) 71, 239
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 4 cut(s) 139, 148, 165, 196
AvaII GGWCC 1 cut(s) 376
AxyI CCTNAGG 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 233
BccI CCATC 1 cut(s) 50
BceAI ACGGC 3 cut(s) 227, 320, 379
BcgI CGANNNNNNTGC 3 cut(s) 262, 296, 382
BcoDI GTCTC 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 240
BisI GCNGC 5 cut(s) 18, 109, 183, 225, 240
BlsI GCNGC 5 cut(s) 19, 110, 184, 226, 241
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmsI GCATC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 233
BsaHI GRCGYC 2 cut(s) 5, 180
BsaXI ACNNNNNCTCC 6 cut(s) 71, 74, 101, 104, 284, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 212
BseGI GGATG 3 cut(s) 8, 42, 288
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 226, 247
BseRI GAGGAG 4 cut(s) 13, 79, 160, 347
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 343
BsmBI CGTCTC 1 cut(s) 343
Bsp143I GATC 2 cut(s) 385, 406
BspCNI CTCAG 2 cut(s) 225, 246
BsrBI CCGCTC 1 cut(s) 162
BssMI GATC 2 cut(s) 385, 406
BssNI GRCGYC 2 cut(s) 5, 180
Bst4CI ACNGT 1 cut(s) 331
BstACI GRCGYC 2 cut(s) 5, 180
BstC8I GCNNGC 3 cut(s) 141, 347, 351
BstDEI CTNAG 2 cut(s) 212, 233
BstF5I GGATG 3 cut(s) 8, 42, 288
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 2 cut(s) 71, 239
BstKTI GATC 2 cut(s) 388, 409
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 2 cut(s) 385, 406
BstXI CCANNNNNNTGG 1 cut(s) 34
Bsu36I CCTNAGG 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 3 cut(s) 8, 42, 288
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 141, 347, 351
CfoI GCGC 2 cut(s) 71, 239
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 1 cut(s) 188
CviJI RGCY 3 cut(s) 139, 345, 349
CviKI_1 RGCY 3 cut(s) 139, 345, 349
DdeI CTNAG 2 cut(s) 212, 233
DpnI GATC 2 cut(s) 387, 408
DpnII GATC 2 cut(s) 385, 406
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EciI GGCGGA 2 cut(s) 106, 381
Eco47I GGWCC 1 cut(s) 376
Eco81I CCTNAGG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 343
FauI CCCGC 2 cut(s) 167, 198
Fnu4HI GCNGC 5 cut(s) 18, 109, 183, 225, 240
FokI GGATG 2 cut(s) 29, 275
Fsp4HI GCNGC 5 cut(s) 18, 109, 183, 225, 240
GlaI GCGC 2 cut(s) 70, 238
GluI GCNGC 5 cut(s) 18, 109, 183, 225, 240
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 240
HapII CCGG 1 cut(s) 342
HgaI GACGC 1 cut(s) 188
HhaI GCGC 2 cut(s) 71, 239
Hin1I GRCGYC 2 cut(s) 5, 180
Hin6I GCGC 2 cut(s) 69, 237
HinP1I GCGC 2 cut(s) 69, 237
HinfI GANTC 2 cut(s) 38, 369
HpaII CCGG 1 cut(s) 342
HphI GGTGA 4 cut(s) 139, 148, 165, 196
Hpy99I CGWCG 3 cut(s) 182, 335, 365
HpyAV CCTTC 4 cut(s) 103, 130, 196, 204
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 1 cut(s) 309
HpyF3I CTNAG 2 cut(s) 212, 233
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 2 cut(s) 5, 180
HspAI GCGC 2 cut(s) 69, 237
Kzo9I GATC 2 cut(s) 385, 406
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 5 cut(s) 20, 149, 199, 331, 355
LweI GCATC 1 cut(s) 228
MaeII ACGT 1 cut(s) 5
MalI GATC 2 cut(s) 387, 408
MbiI CCGCTC 1 cut(s) 162
MboI GATC 2 cut(s) 385, 406
MboII GAAGA 1 cut(s) 271
MlyI GAGTC 2 cut(s) 32, 378
MspI CCGG 1 cut(s) 342
NdeII GATC 2 cut(s) 385, 406
PcsI WCGNNNNNNNCGW 3 cut(s) 327, 357, 369
PkrI GCNGC 5 cut(s) 19, 110, 184, 226, 241
PleI GAGTC 2 cut(s) 32, 377
PpsI GAGTC 2 cut(s) 32, 377
PpuMI RGGWCCY 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 376
PspPI GGNCC 1 cut(s) 376
PspPPI RGGWCCY 1 cut(s) 376
SatI GCNGC 5 cut(s) 18, 109, 183, 225, 240
Sau3AI GATC 2 cut(s) 385, 406
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 2 cut(s) 32, 378
SetI ASST 9 cut(s) 8, 32, 53, 66, 141, 156, 170, 234, 381
SfaNI GCATC 1 cut(s) 228
SinI GGWCC 1 cut(s) 376
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 96, 360, 372
TauI GCSGC 5 cut(s) 20, 111, 185, 227, 242
TscAI CASTG 1 cut(s) 299
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 376
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.