Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005186

Physical Location & Seq

Genomic Coordinates Forward (+)

24804088 .. 24806693

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG241300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTCTGCCTCCGTTCTCGCCATCAATTCTGACTCCGAAAACACTACCGATCACATCTCTAAAGGTAAGTCGGAATGCCGGATTTTGGTGTCGTTGGAAAGGATTGTGGAGAATTGGGTCGTGCAGCGCGATTTCACGACAGGCCTGGAATTCGAAGACGACACTCAAATATCTCCGTTCAAGAATTTTCTCTATCCTTTGTCAAAGGAAGTGATGAGAAACCCATTGGTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

78

Amino Acids

8.9

Weight (kDa)

4.78

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005186)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38800 FvH4_3g38800 FvH4_3g38800
malus_domestica	MD11G1072100.v1.1
prunus_persica	Prupe.6G055800_v2.0.a1
pyrus_communis	pycom04g08530 pycom11g06010
rosa_chinensis	RchiOBHm_Chr5g0069981
rosa_laevigata	RLG00000018167 RLG00000030052 RLG00000036111
rosa_multiflora	Rmu_co8080984.1_g000001 Rmu_co8211894.1_g000002 Rmu_sc0005076.1_g000001 Rmu_sc0021441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011070
rosa_rugosa	Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1AG439800 Rh1BG194500 Rh1DG222700 Rh4BG162700 Rh5AG458400 Rh5BG477100 Rh5CG176700 Rh5CG500800 Rh5DG489100 Rh7DG241300
rosa_wichuraiana	Rw5G014670 Rw5G042790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	149, 184
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	144
Alw21I	GWGCWC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	2 cut(s)	149, 184
AspLEI	GCGC	1 cut(s)	129
AsuII	TTCGAA	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	235
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	153
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	144
CfoI	GCGC	1 cut(s)	129
CviJI	RGCY	1 cut(s)	144
CviKI_1	RGCY	1 cut(s)	144
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	235
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	31, 37, 73
Hpy188III	TCNNGA	2 cut(s)	136, 181
HpyCH4V	TGCA	1 cut(s)	124
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	4 cut(s)	92, 126, 131, 158
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	235
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	4 cut(s)	25, 112, 149, 184
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	51, 75
MnlI	CCTC	1 cut(s)	19
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	129
NdeII	GATC	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	153
SgeI	CNNG	9 cut(s)	29, 91, 133, 140, 148, 153, 157, 158, 193
Sse9I	AATT	4 cut(s)	25, 112, 149, 184
SseBI	AGGCCT	1 cut(s)	144
SspMI	CTAG	1 cut(s)	235
StuI	AGGCCT	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	144
TaqI	TCGA	1 cut(s)	153
TasI	AATT	4 cut(s)	25, 112, 149, 184
TseI	GCWGC	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	165
XapI	RAATTY	2 cut(s)	149, 184
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.