Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8211894.1

Orthogroup ID

OG0005186

Physical Location & Seq

Genomic Coordinates Reverse (-)

403 .. 727

Gene Structure 325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8211894.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

accgtcgtcgtttcctgctggctctccctccttgactcggcagtcgaagacctccctgatctccgcaaaaaaatcgatgatctttctagagacatgaagcaatctcaattcaaagtcacagagaacgaagagagagttcaccacactcttcggaaagaaggaaaactgatgcagacgaagaccagcaaagccgttgagatcgcaattatcatggatttggctcgagctctcggaattgagctagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

82

Amino Acids

9.31

Weight (kDa)

6.06

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005186)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38800 FvH4_3g38800 FvH4_3g38800
malus_domestica	MD11G1072100.v1.1
prunus_persica	Prupe.6G055800_v2.0.a1
pyrus_communis	pycom04g08530 pycom11g06010
rosa_chinensis	RchiOBHm_Chr5g0069981
rosa_laevigata	RLG00000018167 RLG00000030052 RLG00000036111
rosa_multiflora	Rmu_co8080984.1_g000001 Rmu_co8211894.1_g000002 Rmu_sc0005076.1_g000001 Rmu_sc0021441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011070
rosa_rugosa	Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1AG439800 Rh1BG194500 Rh1DG222700 Rh4BG162700 Rh5AG458400 Rh5BG477100 Rh5CG176700 Rh5CG500800 Rh5DG489100 Rh7DG241300
rosa_wichuraiana	Rw5G014670 Rw5G042790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AciI	CCGC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	2 cut(s)	227, 241
AluI	AGCT	2 cut(s)	227, 241
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	84
Ama87I	CYCGRG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	54, 185
Bbv12I	GWGCWC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	87, 242
BmeT110I	CYCGRG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	245
BpiI	GAAGAC	2 cut(s)	54, 185
Bsa29I	ATCGAT	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseCI	ATCGAT	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	37
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	58, 79, 198
BspACI	CCGC	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	75
BspOI	GCTAGC	1 cut(s)	245
BssMI	GATC	3 cut(s)	58, 79, 198
Bst4CI	ACNGT	1 cut(s)	4
Bst6I	CTCTTC	2 cut(s)	123, 153
BstC8I	GCNNGC	2 cut(s)	20, 243
BstKTI	GATC	3 cut(s)	61, 82, 201
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	3 cut(s)	58, 79, 198
BstV2I	GAAGAC	2 cut(s)	54, 185
Bsu15I	ATCGAT	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	20, 243
ClaI	ATCGAT	1 cut(s)	75
CviAII	CATG	2 cut(s)	94, 211
CviJI	RGCY	6 cut(s)	22, 191, 221, 227, 241, 245
CviKI_1	RGCY	6 cut(s)	22, 191, 221, 227, 241, 245
DpnI	GATC	3 cut(s)	60, 81, 200
DpnII	GATC	3 cut(s)	58, 79, 198
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	123, 153
EarI	CTCTTC	2 cut(s)	123, 153
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	2 cut(s)	97, 214
FaiI	YATR	2 cut(s)	95, 212
FatI	CATG	2 cut(s)	93, 210
FriOI	GRGCYC	1 cut(s)	229
FspBI	CTAG	2 cut(s)	87, 242
Hin1II	CATG	2 cut(s)	97, 214
HinfI	GANTC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	153, 233
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	2 cut(s)	8, 11
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	4
HpyCH4V	TGCA	1 cut(s)	172
Hsp92II	CATG	2 cut(s)	97, 214
Kzo9I	GATC	3 cut(s)	58, 79, 198
LpnPI	CCDG	4 cut(s)	4, 28, 69, 196
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	87, 242
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	3 cut(s)	60, 81, 200
MboI	GATC	3 cut(s)	58, 79, 198
MboII	GAAGA	4 cut(s)	59, 140, 140, 190
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	3 cut(s)	107, 204, 234
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	2 cut(s)	38, 62
NdeII	GATC	3 cut(s)	58, 79, 198
NheI	GCTAGC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	97, 214
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	222
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	229
Sau3AI	GATC	3 cut(s)	58, 79, 198
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	3 cut(s)	54, 229, 243
SfaNI	GCATC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	222
SlaI	CTCGAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	107, 204, 234
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	2 cut(s)	87, 242
SstI	GAGCTC	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	4
TaqI	TCGA	3 cut(s)	45, 75, 223
TasI	AATT	3 cut(s)	107, 204, 234
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	86
XhoI	CTCGAG	1 cut(s)	222
XspI	CTAG	2 cut(s)	87, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.