Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005076.1

Orthogroup ID

OG0005186

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1604

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005076.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 889 bp

ggtcacccatgctttgttgtttccatttacagagtcagtagcttgtcatataaaatctggggaagggattaaaaccattttaccatttcttgagcaacctgaagtggaactcagaattcaagcttataggcttacaagactactgtcagagaggtttggtcaagatattgctgatgagctaaggccttgttacaagctttccctgttgaaagacaaactattagatgaccaatcagcagagagtgtgagatctgatgctgcatgcatacttgcaaaccttccactctcggaagacgaagtgaagacactcctagaagttaattttgttagatggatagctactactctcaaaaaccagtaccaaacttcgagtgggaggaatatttctcgacctgcatcaagcatgttggaaggtcttcttggtcttttacttcacattacaaagaacctcaatccgcaaactcttagtacagtcaaagagcatagccttattactatttttcgtcatcagcttaattatccttcaaacccaagagtaaaacaactagccatccttgggttgaaaaacgtgtctggatatggaagatcagtagctgctatgcagtcaggaccacaacttccccatggattatgttctcgtttgatgttcatgtgcggacggtcttctctagaaccttccacgtgtccgatacacaacattccatgcgaagaagatagtcaattgtgtttgctaaagagcaattgcatcaagccccttgttgatctactcaacgacaacaccactagtgttcagattgctgcagtggaggcactgtccactctagtaatagagacttctagttctagcaacttcaaaagagcagttgacgaacttgagcaattgggtgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

296

Amino Acids

32.74

Weight (kDa)

6.42

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005186)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38800 FvH4_3g38800 FvH4_3g38800
malus_domestica	MD11G1072100.v1.1
prunus_persica	Prupe.6G055800_v2.0.a1
pyrus_communis	pycom04g08530 pycom11g06010
rosa_chinensis	RchiOBHm_Chr5g0069981
rosa_laevigata	RLG00000018167 RLG00000030052 RLG00000036111
rosa_multiflora	Rmu_co8080984.1_g000001 Rmu_co8211894.1_g000002 Rmu_sc0005076.1_g000001 Rmu_sc0021441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011070
rosa_rugosa	Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1AG439800 Rh1BG194500 Rh1DG222700 Rh4BG162700 Rh5AG458400 Rh5BG477100 Rh5CG176700 Rh5CG500800 Rh5DG489100 Rh7DG241300
rosa_wichuraiana	Rw5G014670 Rw5G042790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	401
AciI	CCGC	2 cut(s)	456, 655
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	121
AcvI	CACGTG	1 cut(s)	682
AfaI	GTAC	2 cut(s)	360, 470
AfiI	CCNNNNNNNGG	1 cut(s)	556
AflIII	ACRYGT	2 cut(s)	568, 681
AgsI	TTSAA	5 cut(s)	120, 209, 526, 563, 854
AhlI	ACTAGT	1 cut(s)	783
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	7 cut(s)	42, 123, 179, 197, 339, 512, 594
AluI	AGCT	7 cut(s)	42, 123, 179, 197, 339, 512, 594
Alw26I	GTCTC	1 cut(s)	825
AlwNI	CAGNNNCTG	1 cut(s)	594
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	3 cut(s)	258, 594, 798
ApoI	RAATTY	1 cut(s)	115
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	609
BbrPI	CACGTG	1 cut(s)	682
BbsI	GAAGAC	4 cut(s)	298, 309, 408, 655
BbvI	GCAGC	3 cut(s)	245, 581, 785
BccI	CCATC	2 cut(s)	325, 558
BcoDI	GTCTC	1 cut(s)	825
BcuI	ACTAGT	1 cut(s)	783
BfaI	CTAG	7 cut(s)	312, 546, 669, 784, 822, 838, 844
BfmI	CTRYAG	1 cut(s)	799
BfuAI	ACCTGC	1 cut(s)	401
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	3 cut(s)	259, 595, 799
BlsI	GCNGC	3 cut(s)	260, 596, 800
Bme18I	GGWCC	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	609
BmsI	GCATC	3 cut(s)	245, 405, 754
BoxI	GACNNNNGTC	1 cut(s)	143
BpiI	GAAGAC	4 cut(s)	298, 309, 408, 655
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	682
BsaJI	CCNNGG	2 cut(s)	554, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	798, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	554, 623
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	245, 581, 785
BshFI	GGCC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	825
BsnI	GGCC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	249, 585, 761
Bsp19I	CCATGG	1 cut(s)	623
BspACI	CCGC	2 cut(s)	456, 655
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	803
BspMI	ACCTGC	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	554, 623
BssMI	GATC	3 cut(s)	249, 585, 761
BssT1I	CCWWGG	2 cut(s)	554, 623
Bst4CI	ACNGT	4 cut(s)	145, 473, 661, 814
BstBAI	YACGTR	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	111, 180, 465
BstDSI	CCRYGG	1 cut(s)	623
BstEII	GGTNACC	1 cut(s)	2
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	3 cut(s)	252, 588, 764
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	3 cut(s)	249, 585, 761
BstMWI	GCNNNNNNNGC	1 cut(s)	807
BstNSI	RCATGY	2 cut(s)	265, 407
BstPAI	GACNNNNGTC	1 cut(s)	143
BstPI	GGTNACC	1 cut(s)	2
BstSFI	CTRYAG	1 cut(s)	799
BstV1I	GCAGC	3 cut(s)	245, 581, 785
BstV2I	GAAGAC	4 cut(s)	298, 309, 408, 655
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	2 cut(s)	808, 810
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	359, 469
CviAII	CATG	6 cut(s)	9, 262, 404, 624, 650, 703
CviQI	GTAC	2 cut(s)	359, 469
DdeI	CTNAG	3 cut(s)	111, 180, 465
DpnI	GATC	3 cut(s)	251, 587, 763
DpnII	GATC	3 cut(s)	249, 585, 761
Eco130I	CCWWGG	2 cut(s)	554, 623
Eco147I	AGGCCT	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	609
Eco57I	CTGAAG	1 cut(s)	121
Eco72I	CACGTG	1 cut(s)	682
Eco91I	GGTNACC	1 cut(s)	2
EcoO65I	GGTNACC	1 cut(s)	2
EcoRI	GAATTC	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	554, 623
EcoT22I	ATGCAT	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	554, 623
FaeI	CATG	6 cut(s)	12, 265, 407, 627, 653, 706
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FatI	CATG	6 cut(s)	8, 261, 403, 623, 649, 702
Fnu4HI	GCNGC	3 cut(s)	259, 595, 799
FokI	GGATG	1 cut(s)	537
Fsp4HI	GCNGC	3 cut(s)	259, 595, 799
FspBI	CTAG	7 cut(s)	312, 546, 669, 784, 822, 838, 844
GluI	GCNGC	3 cut(s)	259, 595, 799
HaeIII	GGCC	1 cut(s)	185
Hin1II	CATG	6 cut(s)	12, 265, 407, 627, 653, 706
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HindIII	AAGCTT	2 cut(s)	121, 195
HinfI	GANTC	1 cut(s)	33
Hpy166II	GTNNAC	2 cut(s)	817, 866
Hpy188I	TCNGA	6 cut(s)	114, 149, 254, 290, 688, 793
Hpy188III	TCNNGA	6 cut(s)	90, 162, 388, 574, 607, 669
Hpy8I	GTNNAC	2 cut(s)	817, 866
HpyAV	CCTTC	5 cut(s)	57, 288, 405, 532, 685
HpyCH4III	ACNGT	4 cut(s)	145, 473, 661, 814
HpyCH4IV	ACGT	2 cut(s)	568, 681
HpyCH4V	TGCA	7 cut(s)	261, 265, 273, 396, 602, 745, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	807
HpyF3I	CTNAG	3 cut(s)	111, 180, 465
HpySE526I	ACGT	2 cut(s)	568, 681
Hsp92II	CATG	6 cut(s)	12, 265, 407, 627, 653, 706
Kzo9I	GATC	3 cut(s)	249, 585, 761
LpnPI	CCDG	7 cut(s)	43, 112, 216, 369, 406, 559, 592
Lsp1109I	GCAGC	3 cut(s)	245, 581, 785
LweI	GCATC	3 cut(s)	245, 405, 754
MaeI	CTAG	7 cut(s)	312, 546, 669, 784, 822, 838, 844
MaeII	ACGT	2 cut(s)	568, 681
MaeIII	GTNAC	2 cut(s)	2, 189
MalI	GATC	3 cut(s)	251, 587, 763
MboI	GATC	3 cut(s)	249, 585, 761
MboII	GAAGA	7 cut(s)	303, 314, 408, 595, 655, 720, 723
MfeI	CAATTG	3 cut(s)	720, 740, 879
MflI	RGATCY	1 cut(s)	249
MluCI	AATT	6 cut(s)	115, 320, 515, 720, 740, 879
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	4 cut(s)	145, 370, 459, 800
Mph1103I	ATGCAT	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	3 cut(s)	70, 319, 514
MunI	CAATTG	3 cut(s)	720, 740, 879
MwoI	GCNNNNNNNGC	1 cut(s)	807
NcoI	CCATGG	1 cut(s)	623
NdeII	GATC	3 cut(s)	249, 585, 761
NlaIII	CATG	6 cut(s)	12, 265, 407, 627, 653, 706
NmuCI	GTSAC	1 cut(s)	2
NsiI	ATGCAT	1 cut(s)	267
NspI	RCATGY	2 cut(s)	265, 407
PaeI	GCATGC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	260, 596, 800
PleI	GAGTC	1 cut(s)	41
PmaCI	CACGTG	1 cut(s)	682
PmlI	CACGTG	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	682
PshAI	GACNNNNGTC	1 cut(s)	143
PspCI	CACGTG	1 cut(s)	682
PspEI	GGTNACC	1 cut(s)	2
PspPI	GGNCC	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	803
PstNI	CAGNNNCTG	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	2 cut(s)	360, 470
RsaNI	GTAC	2 cut(s)	359, 469
SaqAI	TTAA	3 cut(s)	70, 319, 514
SatI	GCNGC	3 cut(s)	259, 595, 799
Sau3AI	GATC	3 cut(s)	249, 585, 761
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	1 cut(s)	42
SfaNI	GCATC	3 cut(s)	245, 405, 754
SfcI	CTRYAG	1 cut(s)	799
SinI	GGWCC	1 cut(s)	609
SmlI	CTYRAG	2 cut(s)	90, 873
SmoI	CTYRAG	2 cut(s)	90, 873
SpeI	ACTAGT	1 cut(s)	783
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	6 cut(s)	115, 320, 515, 720, 740, 879
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	2 cut(s)	456, 655
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	7 cut(s)	312, 546, 669, 784, 822, 838, 844
StuI	AGGCCT	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	554, 623
TaaI	ACNGT	4 cut(s)	145, 473, 661, 814
TaiI	ACGT	2 cut(s)	571, 684
TaqI	TCGA	2 cut(s)	369, 389
TasI	AATT	6 cut(s)	115, 320, 515, 720, 740, 879
TatI	WGTACW	1 cut(s)	468
Tru1I	TTAA	3 cut(s)	70, 319, 514
Tru9I	TTAA	3 cut(s)	70, 319, 514
TscAI	CASTG	2 cut(s)	808, 817
TseFI	GTSAC	1 cut(s)	2
TseI	GCWGC	3 cut(s)	258, 594, 798
Tsp45I	GTSAC	1 cut(s)	2
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	2 cut(s)	808, 817
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	668
XceI	RCATGY	2 cut(s)	265, 407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	7 cut(s)	312, 546, 669, 784, 822, 838, 844
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.