Rh1DG222700

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005186
Physical Location & Seq
Reverse (-)
43284643 .. 43285139
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG222700.1

Sequence Viewer

Length: 294 bp
ATGTCGTCTTACTCCAAAGGCAAAATCTTCGTCCTCATCCACTGCCTCTCCCTCTGCAAATCCCTCAACGAAAACACCGTCGCCGTCTCCGGCTGGCTGGTCCTCCTCGACTCCGCCGTCGAGGACCTCCCCGATCTCCGCAAAAAAATCGCCGATCTCTCCAGAGACATGAAGCAAGCTCAATTCAAAGTCACAGAGAACGAAGAGAGAACTGATTTGGACCAGGCCGATCCCGTCACGGCGAAGCAGACGACCATCATCCACGAAGGACGTCAGCGACATGGAAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

97

Amino Acids

10.93

Weight (kDa)

5.89

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AatII GACGTC 1 cut(s) 274
AciI CCGC 2 cut(s) 114, 139
AclWI GGATC 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 271
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 91, 159
AlwI GGATC 1 cut(s) 224
AoxI GGCC 1 cut(s) 225
ArsI GACNNNNNNTTYG 4 cut(s) 15, 47, 63, 95
AspS9I GGNCC 3 cut(s) 100, 124, 220
AvaII GGWCC 3 cut(s) 100, 124, 220
BccI CCATC 1 cut(s) 263
BceAI ACGGC 3 cut(s) 68, 101, 255
BcgI CGANNNNNNTGC 4 cut(s) 10, 44, 130, 164
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 91, 159
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 3 cut(s) 100, 124, 220
BmgT120I GGNCC 3 cut(s) 100, 124, 220
BmrFI CCNGG 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
BseBI CCWGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 36, 258
BseRI GAGGAG 1 cut(s) 95
BshFI GGCC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 91, 159
BsmBI CGTCTC 1 cut(s) 91
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 3 cut(s) 133, 154, 229
BspACI CCGC 2 cut(s) 114, 139
BspANI GGCC 1 cut(s) 227
BspPI GGATC 1 cut(s) 224
BssMI GATC 3 cut(s) 133, 154, 229
BssNI GRCGYC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 95, 177
BstF5I GGATG 2 cut(s) 36, 258
BstKTI GATC 3 cut(s) 136, 157, 232
BstMAI GTCTC 2 cut(s) 91, 159
BstMBI GATC 3 cut(s) 133, 154, 229
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 36, 258
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 95, 177
Cfr13I GGNCC 3 cut(s) 100, 124, 220
CviAII CATG 2 cut(s) 169, 281
CviJI RGCY 4 cut(s) 93, 97, 179, 227
CviKI_1 RGCY 4 cut(s) 93, 97, 179, 227
DpnI GATC 3 cut(s) 135, 156, 231
DpnII GATC 3 cut(s) 133, 154, 229
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 103
Eco47I GGWCC 3 cut(s) 100, 124, 220
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 2 cut(s) 172, 284
FaiI YATR 2 cut(s) 170, 282
FatI CATG 2 cut(s) 168, 280
FokI GGATG 2 cut(s) 23, 245
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 271
Hin1II CATG 2 cut(s) 172, 284
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 162
Hpy99I CGWCG 2 cut(s) 83, 122
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 271
Hsp92I GRCGYC 1 cut(s) 271
Hsp92II CATG 2 cut(s) 172, 284
Kzo9I GATC 3 cut(s) 133, 154, 229
LpnPI CCDG 6 cut(s) 79, 83, 103, 175, 209, 236
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 190, 235
MalI GATC 3 cut(s) 135, 156, 231
MboI GATC 3 cut(s) 133, 154, 229
MboII GAAGA 2 cut(s) 19, 215
MluCI AATT 1 cut(s) 182
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 8 cut(s) 44, 56, 62, 74, 113, 115, 116, 137
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
NdeII GATC 3 cut(s) 133, 154, 229
NlaIII CATG 2 cut(s) 172, 284
NmuCI GTSAC 2 cut(s) 190, 235
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 114
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspPI GGNCC 3 cut(s) 100, 124, 220
PspPPI RGGWCCY 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 285
Sau3AI GATC 3 cut(s) 133, 154, 229
Sau96I GGNCC 3 cut(s) 100, 124, 220
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 224
SetI ASST 3 cut(s) 129, 181, 274
SinI GGWCC 3 cut(s) 100, 124, 220
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 1 cut(s) 182
SsiI CCGC 2 cut(s) 114, 139
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 274
TaqI TCGA 2 cut(s) 108, 120
TasI AATT 1 cut(s) 182
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 2 cut(s) 190, 235
Tsp45I GTSAC 2 cut(s) 190, 235
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 3 cut(s) 100, 124, 220
ZraI GACGTC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.