Prupe.6G298000_v2.0.a1

RING finger and transmembrane domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
27199663 .. 27204069
4407 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G298000.1

Sequence Viewer

Length: 1419 bp
ATGGAAGTGCCGGGTGGCAATCTGGACTCGTTTAGAGCTGCTTCGGGAAATAGTAGTTCTAGAAGATATGGAATGTTATCCGCTTCCAATATCATTCAGGCACCACTTTCTGCCTTGTTGGAGTACTCGGGTCTTCTCCGTGGCCGCTCTAATCACCAAGAAGCTGAATCTTTAATTAACGGCCGTAGCGCTGCTGCTTTCCGGGATCACCATCATAGTCAGCTGGACCAATCTCCAACTACAAGCAACGACGGGGAGGTTTCCATTAGGATAATTGGTGCAGGGGAGCAGGAGCATGACAGGGAAGGCGCAGGGTTAGTAGTTGGACAGTTGAGGGAAGTTACTGTTCCCCCAAATGAGGTTTCTGCACCACCAATGGCAGGGGTGGCGTCTGTGTCATTGACAACAGAGGAGGGTCAGACAGATGGCAGAACAGATCGTAGTTCGGGAGAGGGCATGCCCCAATCGTTAAATGGAAGTGCTGATGGAGAAGGAGTTGATGGAGCTGGGTCTAATGGCAGAGATTCTTCTTACCAGAGATATGACATTCAGCAGGCAGCTAGGTGGATTGAGCAGGTCCTTCCCTTTTCTTTGCTTCTATTGGTGGTCTTCATCCGCCAGCATTTGCAGGGTTTCTTTGTTACAATTTGGATTGCTGCTGTTATGTTCAAGTCAAATGATATTCTAAGGAAACAGACAGCTTTGAAGGGAGAGAGGAAAGTCGCAGTTCTAATCGGCATCTCTCTTGCATTTGCATTGCACGTGGTTGGTGTTTACTGGTGGTATCAGAATGATGATCTGTTGTACCCATTAATTATGCTTCCTCCTAAACTTATACCACCATTTTGGCACGCTGTTTTCATCATCATGGTGAATGACACCCTGGTCCGGCAGGCAGCAATGGTGCTCAAGTGCATTCTATTAATATACTACAAAAACAGCAGAGGCCGAAACTATCGTAAGCAGGGTCAAATGCTTACTCTGCTTGAGTATTTACTGCTCTTGTACCGTGCCTTGTTGCCAACACCAGTGTGGTATCGTTTCTTCTTGAACAAAGAATATGGGAGTCTCTTTTCATCCCTAATGACGGGGTTATATTTGACTTTCAAGCTCACATCTGTTGTTGAGAAGGTGCAATCCTTCTTTGCTGCATTGAAGGCATTGTCACGTAAAGAGGTGCACTATGGGGCATATGCGACATCAGAACAGGTCAATGCAGCTGGCGATCTTTGTGCAATTTGCCAGGAGAAGATGCACGCTCCTATCCTACTTCGATGTAAACACATCTTTTGTGAGGACTGTGTATCAGAGTGGTTTGAGAGAGAACGGACGTGCCCATTGTGCAGAGCTTTGGTAAAACCTGCAGATCTTAGATCATTCGGCGATGGATCAACGAGTTTGTTTTTCCAGCTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

52.56

Weight (kDa)

7.62

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
Acc36I ACCTGC 2 cut(s) 565, 1369
AccB1I GGYRCC 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 147
AciI CCGC 3 cut(s) 81, 145, 616
AclWI GGATC 2 cut(s) 213, 1396
AcoI YGGCCR 2 cut(s) 142, 181
AcvI CACGTG 1 cut(s) 763
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 3 cut(s) 125, 806, 1007
AfeI AGCGCT 1 cut(s) 190
AfiI CCNNNNNNNGG 4 cut(s) 358, 380, 888, 1087
AgsI TTSAA 5 cut(s) 670, 706, 1051, 1108, 1156
AjiI CACGTC 1 cut(s) 1332
AjnI CCWGG 2 cut(s) 882, 1242
AjuI GAANNNNNNNTTGG 2 cut(s) 346, 378
AleI CACNNNNGTG 1 cut(s) 1030
Alw21I GWGCWC 2 cut(s) 909, 1182
Alw26I GTCTC 1 cut(s) 1073
Alw44I GTGCAC 1 cut(s) 1178
AlwI GGATC 2 cut(s) 213, 1396
Ama87I CYCGRG 1 cut(s) 127
Aor51HI AGCGCT 1 cut(s) 190
AoxI GGCC 3 cut(s) 142, 181, 946
ApaLI GTGCAC 1 cut(s) 1178
ApeKI GCWGC 8 cut(s) 38, 191, 194, 557, 656, 896, 1148, 1217
AseI ATTAAT 2 cut(s) 812, 923
AspLEI GCGC 2 cut(s) 191, 311
AspS9I GGNCC 3 cut(s) 226, 577, 886
AsuC2I CCSGG 2 cut(s) 12, 203
AsuHPI GGTGA 3 cut(s) 146, 200, 883
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 3 cut(s) 226, 577, 886
BaeGI GKGCMC 2 cut(s) 1182, 1337
BanI GGYRCC 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BbrPI CACGTG 1 cut(s) 763
BbsI GAAGAC 2 cut(s) 125, 601
Bbv12I GWGCWC 2 cut(s) 909, 1182
BbvI GCAGC 8 cut(s) 25, 178, 181, 569, 643, 908, 1135, 1229
BccI CCATC 5 cut(s) 219, 419, 479, 494, 1379
BceAI ACGGC 2 cut(s) 168, 196
BcgI CGANNNNNNTGC 2 cut(s) 1214, 1248
BciT130I CCWGG 2 cut(s) 884, 1244
BcnI CCSGG 2 cut(s) 12, 203
BcoDI GTCTC 1 cut(s) 1073
BfaI CTAG 2 cut(s) 60, 561
BfmI CTRYAG 1 cut(s) 1362
BfoI RGCGCY 1 cut(s) 192
BfuAI ACCTGC 2 cut(s) 565, 1369
BglII AGATCT 1 cut(s) 1366
BisI GCNGC 9 cut(s) 39, 145, 192, 195, 558, 657, 897, 1149, 1218
BlsI GCNGC 9 cut(s) 40, 146, 193, 196, 559, 658, 898, 1150, 1219
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 4 cut(s) 12, 203, 884, 1244
Bme18I GGWCC 3 cut(s) 226, 577, 886
BmeT110I CYCGRG 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 1332
BmgT120I GGNCC 3 cut(s) 226, 577, 886
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 4 cut(s) 12, 203, 884, 1244
BmsI GCATC 2 cut(s) 747, 1242
BpiI GAAGAC 2 cut(s) 125, 601
BpuEI CTTGAG 2 cut(s) 893, 1007
BpuMI CCSGG 2 cut(s) 12, 203
BsaAI YACGTR 2 cut(s) 763, 1169
BsaBI GATNNNNATC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 139, 882
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 4 cut(s) 358, 380, 888, 1087
Bse1I ACTGG 2 cut(s) 782, 1028
Bse3DI GCAATG 2 cut(s) 755, 906
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 2 cut(s) 884, 1244
BseDI CCNNGG 2 cut(s) 139, 882
BseGI GGATG 2 cut(s) 612, 1076
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 4 cut(s) 358, 380, 888, 1087
BseMI GCAATG 2 cut(s) 755, 906
BseNI ACTGG 2 cut(s) 782, 1028
BseRI GAGGAG 1 cut(s) 425
BseSI GKGCMC 2 cut(s) 1182, 1337
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 8 cut(s) 25, 178, 181, 569, 643, 908, 1135, 1229
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 3 cut(s) 300, 351, 1363
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 3 cut(s) 144, 183, 948
BshNI GGYRCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 2 cut(s) 909, 1182
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 3 cut(s) 11, 202, 889
BslI CCNNNNNNNGG 4 cut(s) 358, 380, 888, 1087
BsmAI GTCTC 1 cut(s) 1073
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 3 cut(s) 144, 183, 948
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 3 cut(s) 909, 1182, 1337
Bsp143I GATC 7 cut(s) 205, 436, 796, 1225, 1366, 1373, 1388
BspACI CCGC 3 cut(s) 81, 145, 616
BspANI GGCC 3 cut(s) 144, 183, 948
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 1366
BspMI ACCTGC 2 cut(s) 565, 1369
BspPI GGATC 2 cut(s) 213, 1396
BspT107I GGYRCC 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 147
BsrDI GCAATG 2 cut(s) 755, 906
BsrI ACTGG 2 cut(s) 782, 1028
BssECI CCNNGG 2 cut(s) 139, 882
BssMI GATC 7 cut(s) 205, 436, 796, 1225, 1366, 1373, 1388
BssNI GRCGYC 1 cut(s) 389
Bst2UI CCWGG 2 cut(s) 884, 1244
Bst4CI ACNGT 4 cut(s) 330, 346, 1010, 1301
BstACI GRCGYC 1 cut(s) 389
BstBAI YACGTR 2 cut(s) 763, 1169
BstC8I GCNNGC 7 cut(s) 458, 555, 620, 852, 894, 1222, 1257
BstDEI CTNAG 2 cut(s) 686, 1370
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 2 cut(s) 612, 1076
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 191, 311
BstKTI GATC 7 cut(s) 208, 439, 799, 1228, 1369, 1376, 1391
BstMAI GTCTC 1 cut(s) 1073
BstMBI GATC 7 cut(s) 205, 436, 796, 1225, 1366, 1373, 1388
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 4 cut(s) 386, 982, 1157, 1341
BstNI CCWGG 2 cut(s) 884, 1244
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 4 cut(s) 10, 201, 882, 1242
BstSFI CTRYAG 1 cut(s) 1362
BstSLI GKGCMC 2 cut(s) 1182, 1337
BstV1I GCAGC 8 cut(s) 25, 178, 181, 569, 643, 908, 1135, 1229
BstV2I GAAGAC 2 cut(s) 125, 601
BstX2I RGATCY 1 cut(s) 1366
BstXI CCANNNNNNTGG 1 cut(s) 846
BstYI RGATCY 1 cut(s) 1366
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 3 cut(s) 144, 183, 948
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 1398
BtrI CACGTC 1 cut(s) 1332
BtsCI GGATG 2 cut(s) 612, 1076
BtsIMutI CAGTG 1 cut(s) 1035
BveI ACCTGC 2 cut(s) 565, 1369
Cac8I GCNNGC 7 cut(s) 458, 555, 620, 852, 894, 1222, 1257
CfoI GCGC 2 cut(s) 191, 311
Cfr13I GGNCC 3 cut(s) 226, 577, 886
CseI GACGC 1 cut(s) 378
Csp6I GTAC 3 cut(s) 124, 805, 1006
CviAII CATG 3 cut(s) 296, 457, 868
CviQI GTAC 3 cut(s) 124, 805, 1006
DdeI CTNAG 2 cut(s) 686, 1370
DpnI GATC 7 cut(s) 207, 438, 798, 1227, 1368, 1375, 1390
DpnII GATC 7 cut(s) 205, 436, 796, 1225, 1366, 1373, 1388
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 2 cut(s) 142, 181
EagI CGGCCG 1 cut(s) 181
EciI GGCGGA 1 cut(s) 605
EclXI CGGCCG 1 cut(s) 181
Eco47I GGWCC 3 cut(s) 226, 577, 886
Eco47III AGCGCT 1 cut(s) 190
Eco52I CGGCCG 1 cut(s) 181
Eco72I CACGTG 1 cut(s) 763
Eco88I CYCGRG 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 882, 1242
FaeI CATG 3 cut(s) 299, 460, 871
FatI CATG 3 cut(s) 295, 456, 867
FauNDI CATATG 1 cut(s) 1192
Fnu4HI GCNGC 9 cut(s) 39, 145, 192, 195, 558, 657, 897, 1149, 1218
FokI GGATG 2 cut(s) 599, 1063
Fsp4HI GCNGC 9 cut(s) 39, 145, 192, 195, 558, 657, 897, 1149, 1218
FspBI CTAG 2 cut(s) 60, 561
GlaI GCGC 2 cut(s) 190, 310
GluI GCNGC 9 cut(s) 39, 145, 192, 195, 558, 657, 897, 1149, 1218
GsaI CCCAGC 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 3 cut(s) 144, 183, 948
HapII CCGG 3 cut(s) 11, 202, 889
HgaI GACGC 1 cut(s) 378
HhaI GCGC 2 cut(s) 191, 311
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 3 cut(s) 299, 460, 871
Hin6I GCGC 2 cut(s) 189, 309
HinP1I GCGC 2 cut(s) 189, 309
HinfI GANTC 4 cut(s) 26, 167, 524, 1066
HpaII CCGG 3 cut(s) 11, 202, 889
HphI GGTGA 3 cut(s) 146, 200, 883
Hpy166II GTNNAC 3 cut(s) 775, 1180, 1280
Hpy188I TCNGA 5 cut(s) 420, 789, 1204, 1309, 1418
Hpy188III TCNNGA 5 cut(s) 23, 45, 60, 447, 1048
Hpy8I GTNNAC 3 cut(s) 775, 1180, 1280
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 7 cut(s) 299, 485, 590, 700, 1123, 1150, 1150
HpyCH4III ACNGT 4 cut(s) 330, 346, 1010, 1301
HpyCH4IV ACGT 3 cut(s) 762, 1168, 1331
HpyF10VI GCNNNNNNNGC 4 cut(s) 386, 982, 1157, 1341
HpyF3I CTNAG 2 cut(s) 686, 1370
HpySE526I ACGT 3 cut(s) 762, 1168, 1331
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 3 cut(s) 299, 460, 871
HspAI GCGC 2 cut(s) 189, 309
Kzo9I GATC 7 cut(s) 205, 436, 796, 1225, 1366, 1373, 1388
LmnI GCTCC 4 cut(s) 286, 292, 503, 1264
Lsp1109I GCAGC 8 cut(s) 25, 178, 181, 569, 643, 908, 1135, 1229
LweI GCATC 2 cut(s) 747, 1242
MaeI CTAG 2 cut(s) 60, 561
MaeII ACGT 3 cut(s) 762, 1168, 1331
MaeIII GTNAC 3 cut(s) 340, 640, 1164
MalI GATC 7 cut(s) 207, 438, 798, 1227, 1368, 1375, 1390
MbiI CCGCTC 1 cut(s) 147
MboI GATC 7 cut(s) 205, 436, 796, 1225, 1366, 1373, 1388
MboII GAAGA 6 cut(s) 75, 125, 519, 601, 1036, 1261
MflI RGATCY 1 cut(s) 1366
MhlI GDGCHC 3 cut(s) 909, 1182, 1337
MluCI AATT 5 cut(s) 174, 273, 645, 813, 1236
MlyI GAGTC 2 cut(s) 20, 1075
MmeI TCCRAC 3 cut(s) 99, 260, 304
MseI TTAA 5 cut(s) 173, 177, 470, 812, 923
MslI CAYNNNNRTG 3 cut(s) 866, 869, 1030
MspA1I CMGCKG 3 cut(s) 223, 1220, 1411
MspI CCGG 3 cut(s) 11, 202, 889
MspR9I CCNGG 4 cut(s) 12, 203, 884, 1244
Mva1269I GAATGC 1 cut(s) 915
MvaI CCWGG 2 cut(s) 884, 1244
MwoI GCNNNNNNNGC 4 cut(s) 386, 982, 1157, 1341
NciI CCSGG 2 cut(s) 12, 203
NdeI CATATG 1 cut(s) 1192
NdeII GATC 7 cut(s) 205, 436, 796, 1225, 1366, 1373, 1388
NlaIII CATG 3 cut(s) 299, 460, 871
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 1164
NspI RCATGY 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 1030
PacI TTAATTAA 1 cut(s) 177
PaeI GCATGC 1 cut(s) 460
PctI GAATGC 1 cut(s) 915
PfeI GAWTC 2 cut(s) 167, 524
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 9 cut(s) 40, 146, 193, 196, 559, 658, 898, 1150, 1219
PleI GAGTC 2 cut(s) 20, 1074
PmaCI CACGTG 1 cut(s) 763
PmlI CACGTG 1 cut(s) 763
PpsI GAGTC 2 cut(s) 20, 1074
Ppu21I YACGTR 2 cut(s) 763, 1169
PpuMI RGGWCCY 1 cut(s) 577
PshBI ATTAAT 2 cut(s) 812, 923
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 2 cut(s) 882, 1242
PspCI CACGTG 1 cut(s) 763
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 882, 1242
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 3 cut(s) 226, 577, 886
PspPPI RGGWCCY 1 cut(s) 577
PstI CTGCAG 1 cut(s) 1366
PsuI RGATCY 1 cut(s) 1366
PvuII CAGCTG 3 cut(s) 223, 1220, 1411
RsaI GTAC 3 cut(s) 125, 806, 1007
RsaNI GTAC 3 cut(s) 124, 805, 1006
RseI CAYNNNNRTG 3 cut(s) 866, 869, 1030
SaqAI TTAA 5 cut(s) 173, 177, 470, 812, 923
SatI GCNGC 9 cut(s) 39, 145, 192, 195, 558, 657, 897, 1149, 1218
Sau3AI GATC 7 cut(s) 205, 436, 796, 1225, 1366, 1373, 1388
Sau96I GGNCC 3 cut(s) 226, 577, 886
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 2 cut(s) 20, 1075
ScrFI CCNGG 4 cut(s) 12, 203, 884, 1244
SduI GDGCHC 3 cut(s) 909, 1182, 1337
SfaNI GCATC 2 cut(s) 747, 1242
SfcI CTRYAG 1 cut(s) 1362
SinI GGWCC 3 cut(s) 226, 577, 886
SmiMI CAYNNNNRTG 3 cut(s) 866, 869, 1030
SmlI CTYRAG 2 cut(s) 908, 986
SmoI CTYRAG 2 cut(s) 908, 986
SphI GCATGC 1 cut(s) 460
Sse9I AATT 5 cut(s) 174, 273, 645, 813, 1236
SsiI CCGC 3 cut(s) 81, 145, 616
SspMI CTAG 2 cut(s) 60, 561
StyD4I CCNGG 4 cut(s) 10, 201, 882, 1242
TaaI ACNGT 4 cut(s) 330, 346, 1010, 1301
TaiI ACGT 3 cut(s) 765, 1171, 1334
TaqI TCGA 1 cut(s) 1273
TasI AATT 5 cut(s) 174, 273, 645, 813, 1236
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 2 cut(s) 167, 524
Tru1I TTAA 5 cut(s) 173, 177, 470, 812, 923
Tru9I TTAA 5 cut(s) 173, 177, 470, 812, 923
TscAI CASTG 1 cut(s) 1035
TseFI GTSAC 1 cut(s) 1164
TseI GCWGC 8 cut(s) 38, 191, 194, 557, 656, 896, 1148, 1217
Tsp45I GTSAC 1 cut(s) 1164
TspDTI ATGAA 3 cut(s) 601, 850, 1065
TspGWI ACGGA 2 cut(s) 128, 1342
TspRI CASTG 1 cut(s) 1035
VneI GTGCAC 1 cut(s) 1178
VpaK11BI GGWCC 3 cut(s) 226, 577, 886
VspI ATTAAT 2 cut(s) 812, 923
XbaI TCTAGA 1 cut(s) 59
XceI RCATGY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 2 cut(s) 470, 1029
XspI CTAG 2 cut(s) 60, 561
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.