pycom07g21390

RING finger and transmembrane domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
23120144 .. 23124400
4257 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21390.2

Sequence Viewer

Length: 1395 bp
ATGGAGGCATCTTCCGGAAATAGTAGTCCCGCCAGTGGGGGAGCCACTGAGGTTGGCAGCAATACGTCGTCGTTCGGGTCTATGCAGTTCCCCGCCCTCCGGTTCTTCCAGTCGCCGCTCTCATTCGTGTTGGATTACTCCGGAATACTCTCTCCCAGCTCTTCCCGCCGCGATTCCGACGCTCCGGTGGTCAACGCTGTAGTCGTTGCCGATTCTCAGCCCCACTCCCCTACGGCCTGCACCTCCGGGTCGAGCAACACCGGGGAGGTTTCGATTCGGATTATCGGCGCCGGCGAGCAAGAGGACCGCGGGAACGGGGGTGCGACGGGGCCGGTTCAAGGGGAGGAGAATGATGGGTCGCCGGGTAGGGTTCAATCGTTGGATGATCTGGCGGGTACAGTCAATGGGGTTGGGTCGGACGAGAGAGTCCCCTTGGTGGCTTCGTCGTCTCCCACACACGCTGGGGATACTGGGAATGGCGCGGAGGATAGTTCTAGGGATTCTGCTTACCAGAGATATGATATTCAGCAGATAGCTAGGTGGATTGAGCAGATTCTTCCGTTTTCGTTGCTCTTACTCGTTGTGTTCATTCGTCAGCATTTGCAAGGTTTCTTTGTCACTATATGGGTATCAGCTGTCATGTATAGGTCAAATGATGTTGTTAAGAAGCAGACTTCTCTAAAGGGGGATAGGAAAATCTCTGTTCTTGTAAGTATTGCTGGTGCTTTTATGCTTCATGTAGTTGTTGTTTACTGGTGGTATCGAAGTGATGATCTTCTATACCCATTGGCAATGCTTCCTCCAAAAACCATACCACCTTTCTGGCATGCCATATTTATCATTTTGGTAAATGATACCATGGTGAGACAGGCAGCGATGGCTTTCAAGTGTTTGTTGCTTATATACTACAAGAATGGCAGAGGCCATAACTATCGTCGGCAGGGTCAAATGTTAACTGTCATTGAGTATACACTGCTGCTGTACCGTGCCTTGTTACCAGCACCCGTTTGGTACAGATTCTTCCTGAACAAAGACAATGGGAGCCTCTTCTCCTCACTTACAACGGGATTATATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAATCCTTTTTGGCTTCCATAAGGGCATTGTCACGGAAGGATATCCATTATGGGTCTCATGCAACATTGGAACAGGTAAATGCAGCAGGAGACCTTTGTGCCATTTGCCAGGAGAAGATGCATGCTCCAATTCTGTTGCGCTGTAAACATATTTTCTGCGAGGATTGTGTCTCTGAATGGTTTGAGAGAGAAAGAACTTGCCCTCTATGCAGGGCACTAGTAAAACCTGCGGATTTGCGAACATATGGAGACGGATCAACGAGTTTAATTTTCCAGTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

51.02

Weight (kDa)

6.79

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 1345
AccB1I GGYRCC 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 968
AccII CGCG 3 cut(s) 171, 309, 482
AccIII TCCGGA 2 cut(s) 14, 140
AclWI GGATC 1 cut(s) 1372
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 3 cut(s) 397, 983, 1013
AfiI CCNNNNNNNGG 5 cut(s) 35, 36, 99, 338, 436
AgsI TTSAA 4 cut(s) 338, 374, 886, 1084
AhlI ACTAGT 1 cut(s) 1327
AjnI CCWGG 1 cut(s) 1218
AluBI AGCT 4 cut(s) 159, 536, 635, 1087
AluI AGCT 4 cut(s) 159, 536, 635, 1087
Alw26I GTCTC 6 cut(s) 453, 859, 1170, 1194, 1285, 1353
AlwI GGATC 1 cut(s) 1372
Aor13HI TCCGGA 2 cut(s) 14, 140
AoxI GGCC 3 cut(s) 234, 329, 922
ApeKI GCWGC 4 cut(s) 57, 872, 976, 1193
AspLEI GCGC 3 cut(s) 290, 482, 1251
AspS9I GGNCC 3 cut(s) 304, 329, 1108
AsuC2I CCSGG 3 cut(s) 247, 262, 363
AsuHPI GGTGA 1 cut(s) 874
AvaII GGWCC 2 cut(s) 304, 1108
BaeGI GKGCMC 1 cut(s) 1327
BaeI ACNNNNGTAYC 2 cut(s) 846, 879
BanI GGYRCC 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 1004, 1036
BbvI GCAGC 4 cut(s) 69, 884, 963, 1205
BccI CCATC 2 cut(s) 347, 871
BceAI ACGGC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 1220
BciVI GTATCC 1 cut(s) 460
BcnI CCSGG 3 cut(s) 247, 262, 363
BcoDI GTCTC 6 cut(s) 453, 859, 1170, 1194, 1285, 1353
BcuI ACTAGT 1 cut(s) 1327
BfaI CTAG 3 cut(s) 495, 537, 1328
BfmI CTRYAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 1345
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 6 cut(s) 58, 116, 169, 873, 977, 1194
BlsI GCNGC 6 cut(s) 59, 117, 170, 874, 978, 1195
Bme1390I CCNGG 4 cut(s) 247, 262, 363, 1220
Bme18I GGWCC 2 cut(s) 304, 1108
BmgT120I GGNCC 3 cut(s) 304, 329, 1108
BmiI GGNNCC 4 cut(s) 43, 289, 330, 1043
BmrFI CCNGG 4 cut(s) 247, 262, 363, 1220
BmrI ACTGGG 1 cut(s) 480
BmsI GCATC 2 cut(s) 17, 1218
BmuI ACTGGG 1 cut(s) 480
BpuMI CCSGG 3 cut(s) 247, 262, 363
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 2 cut(s) 1170, 1194
BsaJI CCNNGG 4 cut(s) 261, 307, 432, 858
BsaWI WCCGGW 4 cut(s) 14, 99, 140, 184
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 36, 99, 338, 436
Bse118I RCCGGY 2 cut(s) 290, 331
Bse1I ACTGG 5 cut(s) 33, 109, 475, 758, 1384
Bse3DI GCAATG 1 cut(s) 798
BseAI TCCGGA 2 cut(s) 14, 140
BseBI CCWGG 1 cut(s) 1220
BseDI CCNNGG 4 cut(s) 261, 307, 432, 858
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 5 cut(s) 35, 36, 99, 338, 436
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 2 cut(s) 39, 230
BseNI ACTGG 5 cut(s) 33, 109, 475, 758, 1384
BseRI GAGGAG 2 cut(s) 359, 1042
BseSI GKGCMC 1 cut(s) 1327
BseXI GCAGC 4 cut(s) 69, 884, 963, 1205
BseYI CCCAGC 2 cut(s) 155, 461
BsgI GTGCAG 1 cut(s) 223
Bsh1236I CGCG 3 cut(s) 171, 309, 482
BshFI GGCC 3 cut(s) 236, 331, 924
BshNI GGYRCC 1 cut(s) 287
BsiSI CCGG 9 cut(s) 15, 100, 141, 185, 246, 261, 291, 332, 362
BslFI GGGAC 2 cut(s) 12, 413
BslI CCNNNNNNNGG 5 cut(s) 35, 36, 99, 338, 436
BsmAI GTCTC 6 cut(s) 453, 859, 1170, 1194, 1285, 1353
BsmBI CGTCTC 2 cut(s) 453, 1353
BsmFI GGGAC 2 cut(s) 12, 413
BsnI GGCC 3 cut(s) 236, 331, 924
Bso31I GGTCTC 2 cut(s) 1170, 1194
Bsp1286I GDGCHC 1 cut(s) 1327
Bsp13I TCCGGA 2 cut(s) 14, 140
Bsp143I GATC 3 cut(s) 385, 772, 1364
Bsp19I CCATGG 1 cut(s) 858
BspANI GGCC 3 cut(s) 236, 331, 924
BspCNI CTCAG 2 cut(s) 40, 229
BspEI TCCGGA 2 cut(s) 14, 140
BspFNI CGCG 3 cut(s) 171, 309, 482
BspLI GGNNCC 4 cut(s) 43, 289, 330, 1043
BspMI ACCTGC 1 cut(s) 1345
BspPI GGATC 1 cut(s) 1372
BspQI GCTCTTC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 2 cut(s) 1170, 1194
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 2 cut(s) 290, 331
BsrI ACTGG 5 cut(s) 33, 109, 475, 758, 1384
BssAI RCCGGY 2 cut(s) 290, 331
BssECI CCNNGG 4 cut(s) 261, 307, 432, 858
BssMI GATC 3 cut(s) 385, 772, 1364
BssNAI GTATAC 1 cut(s) 969
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 432, 858
Bst1107I GTATAC 1 cut(s) 969
Bst2UI CCWGG 1 cut(s) 1220
Bst4CI ACNGT 3 cut(s) 400, 958, 986
Bst6I CTCTTC 2 cut(s) 166, 1052
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 5 cut(s) 238, 292, 296, 828, 1233
BstDEI CTNAG 2 cut(s) 48, 216
BstDSI CCRYGG 2 cut(s) 307, 858
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 3 cut(s) 171, 309, 482
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 3 cut(s) 290, 482, 1251
BstKTI GATC 3 cut(s) 388, 775, 1367
BstMAI GTCTC 6 cut(s) 453, 859, 1170, 1194, 1285, 1353
BstMBI GATC 3 cut(s) 385, 772, 1364
BstMWI GCNNNNNNNGC 3 cut(s) 165, 878, 1317
BstNI CCWGG 1 cut(s) 1220
BstNSI RCATGY 2 cut(s) 830, 1235
BstSCI CCNGG 4 cut(s) 245, 260, 361, 1218
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 1327
BstUI CGCG 3 cut(s) 171, 309, 482
BstV1I GCAGC 4 cut(s) 69, 884, 963, 1205
BstXI CCANNNNNNTGG 1 cut(s) 822
BstZ17I GTATAC 1 cut(s) 969
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 3 cut(s) 236, 331, 924
BtgI CCRYGG 2 cut(s) 307, 858
BtgZI GCGATG 1 cut(s) 890
BtsCI GGATG 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 971
BtsIMutI CAGTG 3 cut(s) 40, 45, 971
BveI ACCTGC 1 cut(s) 1345
Cac8I GCNNGC 5 cut(s) 238, 292, 296, 828, 1233
CfoI GCGC 3 cut(s) 290, 482, 1251
Cfr10I RCCGGY 2 cut(s) 290, 331
Cfr13I GGNCC 3 cut(s) 304, 329, 1108
Cfr42I CCGCGG 1 cut(s) 310
CseI GACGC 1 cut(s) 188
Csp6I GTAC 3 cut(s) 396, 982, 1012
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 6 cut(s) 640, 737, 827, 859, 1169, 1232
CviQI GTAC 3 cut(s) 396, 982, 1012
DdeI CTNAG 2 cut(s) 48, 216
DinI GGCGCC 1 cut(s) 289
DpnI GATC 3 cut(s) 387, 774, 1366
DpnII GATC 3 cut(s) 385, 772, 1364
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
Eam1104I CTCTTC 2 cut(s) 166, 1052
EarI CTCTTC 2 cut(s) 166, 1052
Eco130I CCWWGG 2 cut(s) 432, 858
Eco31I GGTCTC 2 cut(s) 1170, 1194
Eco32I GATATC 1 cut(s) 1153
Eco47I GGWCC 2 cut(s) 304, 1108
EcoRII CCWGG 1 cut(s) 1218
EcoRV GATATC 1 cut(s) 1153
EcoT14I CCWWGG 2 cut(s) 432, 858
EcoT22I ATGCAT 1 cut(s) 1233
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
ErhI CCWWGG 2 cut(s) 432, 858
Esp3I CGTCTC 2 cut(s) 453, 1353
FaeI CATG 6 cut(s) 643, 740, 830, 862, 1172, 1235
FaqI GGGAC 2 cut(s) 12, 413
FatI CATG 6 cut(s) 639, 736, 826, 858, 1168, 1231
FauI CCCGC 5 cut(s) 37, 100, 173, 302, 385
FauNDI CATATG 1 cut(s) 1354
FblI GTMKAC 1 cut(s) 968
Fnu4HI GCNGC 6 cut(s) 58, 116, 169, 873, 977, 1194
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 6 cut(s) 58, 116, 169, 873, 977, 1194
FspBI CTAG 3 cut(s) 495, 537, 1328
GlaI GCGC 3 cut(s) 289, 481, 1250
GluI GCNGC 6 cut(s) 58, 116, 169, 873, 977, 1194
GsaI CCCAGC 2 cut(s) 159, 465
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 3 cut(s) 236, 331, 924
HapII CCGG 9 cut(s) 15, 100, 141, 185, 246, 261, 291, 332, 362
HgaI GACGC 1 cut(s) 188
HhaI GCGC 3 cut(s) 290, 482, 1251
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 6 cut(s) 643, 740, 830, 862, 1172, 1235
Hin6I GCGC 3 cut(s) 288, 480, 1249
HinP1I GCGC 3 cut(s) 288, 480, 1249
HincII GTYRAC 2 cut(s) 193, 954
HindII GTYRAC 2 cut(s) 193, 954
HinfI GANTC 7 cut(s) 173, 212, 274, 426, 500, 553, 1017
HpaI GTTAAC 1 cut(s) 954
HpaII CCGG 9 cut(s) 15, 100, 141, 185, 246, 261, 291, 332, 362
HphI GGTGA 1 cut(s) 874
Hpy166II GTNNAC 5 cut(s) 193, 751, 954, 969, 1256
Hpy188I TCNGA 5 cut(s) 178, 279, 418, 1285, 1394
Hpy188III TCNNGA 3 cut(s) 15, 141, 1024
Hpy8I GTNNAC 5 cut(s) 193, 751, 954, 969, 1256
Hpy99I CGWCG 6 cut(s) 70, 73, 182, 328, 448, 939
HpyAV CCTTC 2 cut(s) 1099, 1141
HpyCH4III ACNGT 3 cut(s) 400, 958, 986
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 7 cut(s) 85, 240, 604, 1172, 1193, 1231, 1320
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 878, 1317
HpyF3I CTNAG 2 cut(s) 48, 216
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 6 cut(s) 643, 740, 830, 862, 1172, 1235
HspAI GCGC 3 cut(s) 288, 480, 1249
KasI GGCGCC 1 cut(s) 287
Kpn2I TCCGGA 2 cut(s) 14, 140
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 954
KspI CCGCGG 1 cut(s) 310
Kzo9I GATC 3 cut(s) 385, 772, 1364
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 4 cut(s) 41, 187, 1041, 1240
Lsp1109I GCAGC 4 cut(s) 69, 884, 963, 1205
LweI GCATC 2 cut(s) 17, 1218
MaeI CTAG 3 cut(s) 495, 537, 1328
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 616, 993, 1140
MalI GATC 3 cut(s) 387, 774, 1366
MbiI CCGCTC 1 cut(s) 118
MboI GATC 3 cut(s) 385, 772, 1364
MboII GAAGA 8 cut(s) 3, 97, 153, 548, 767, 1012, 1039, 1237
MhlI GDGCHC 1 cut(s) 1327
MluCI AATT 2 cut(s) 1239, 1377
Mly113I GGCGCC 1 cut(s) 288
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 4 cut(s) 111, 201, 360, 396
Mph1103I ATGCAT 1 cut(s) 1233
MreI CGCCGGCG 1 cut(s) 290
MroI TCCGGA 2 cut(s) 14, 140
MroNI GCCGGC 1 cut(s) 290
MseI TTAA 4 cut(s) 663, 953, 1076, 1376
MspA1I CMGCKG 2 cut(s) 309, 635
MspI CCGG 9 cut(s) 15, 100, 141, 185, 246, 261, 291, 332, 362
MspR9I CCNGG 4 cut(s) 247, 262, 363, 1220
MvaI CCWGG 1 cut(s) 1220
MvnI CGCG 3 cut(s) 171, 309, 482
MwoI GCNNNNNNNGC 3 cut(s) 165, 878, 1317
NaeI GCCGGC 1 cut(s) 292
NarI GGCGCC 1 cut(s) 288
NciI CCSGG 3 cut(s) 247, 262, 363
NcoI CCATGG 1 cut(s) 858
NdeI CATATG 1 cut(s) 1354
NdeII GATC 3 cut(s) 385, 772, 1364
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 6 cut(s) 643, 740, 830, 862, 1172, 1235
NlaIV GGNNCC 4 cut(s) 43, 289, 330, 1043
NmuCI GTSAC 2 cut(s) 616, 1140
NsiI ATGCAT 1 cut(s) 1233
NspI RCATGY 2 cut(s) 830, 1235
PaeI GCATGC 2 cut(s) 830, 1235
PciSI GCTCTTC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 291
PdiI GCCGGC 1 cut(s) 292
PfeI GAWTC 6 cut(s) 173, 212, 274, 500, 553, 1017
PkrI GCNGC 6 cut(s) 59, 117, 170, 874, 978, 1195
PleI GAGTC 1 cut(s) 434
PluTI GGCGCC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 1218
PspFI CCCAGC 2 cut(s) 155, 461
PspGI CCWGG 1 cut(s) 1218
PspN4I GGNNCC 4 cut(s) 43, 289, 330, 1043
PspPI GGNCC 3 cut(s) 304, 329, 1108
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 3 cut(s) 397, 983, 1013
RsaNI GTAC 3 cut(s) 396, 982, 1012
SacII CCGCGG 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 4 cut(s) 663, 953, 1076, 1376
SatI GCNGC 6 cut(s) 58, 116, 169, 873, 977, 1194
Sau3AI GATC 3 cut(s) 385, 772, 1364
Sau96I GGNCC 3 cut(s) 304, 329, 1108
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 4 cut(s) 247, 262, 363, 1220
SduI GDGCHC 1 cut(s) 1327
SfaNI GCATC 2 cut(s) 17, 1218
SfcI CTRYAG 1 cut(s) 198
SfoI GGCGCC 1 cut(s) 289
Sfr303I CCGCGG 1 cut(s) 310
SgrAI CRCCGGYG 1 cut(s) 290
SgrBI CCGCGG 1 cut(s) 310
SinI GGWCC 2 cut(s) 304, 1108
SpeI ACTAGT 1 cut(s) 1327
SphI GCATGC 2 cut(s) 830, 1235
Sse9I AATT 2 cut(s) 1239, 1377
SspDI GGCGCC 1 cut(s) 287
SspMI CTAG 3 cut(s) 495, 537, 1328
StyD4I CCNGG 4 cut(s) 245, 260, 361, 1218
StyI CCWWGG 2 cut(s) 432, 858
TaaI ACNGT 3 cut(s) 400, 958, 986
TaiI ACGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 251, 272, 763
TasI AATT 2 cut(s) 1239, 1377
TauI GCSGC 2 cut(s) 118, 171
TfiI GAWTC 6 cut(s) 173, 212, 274, 500, 553, 1017
Tru1I TTAA 4 cut(s) 663, 953, 1076, 1376
Tru9I TTAA 4 cut(s) 663, 953, 1076, 1376
TscAI CASTG 3 cut(s) 40, 52, 978
TseFI GTSAC 2 cut(s) 616, 1140
TseI GCWGC 4 cut(s) 57, 872, 976, 1193
Tsp45I GTSAC 2 cut(s) 616, 1140
TspDTI ATGAA 2 cut(s) 577, 725
TspGWI ACGGA 3 cut(s) 549, 1159, 1377
TspRI CASTG 3 cut(s) 40, 52, 978
VpaK11BI GGWCC 2 cut(s) 304, 1108
XceI RCATGY 2 cut(s) 830, 1235
XcmI CCANNNNNNNNNTGG 1 cut(s) 1005
XmiI GTMKAC 1 cut(s) 968
XspI CTAG 3 cut(s) 495, 537, 1328
Zsp2I ATGCAT 1 cut(s) 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.