Rh3AG096800

RING finger and transmembrane domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
8060686 .. 8066285
5600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG096800.1

Sequence Viewer

Length: 1143 bp
ATGGAAGCGCCAGGTGGCAATCATCTGGACTCGTATAGAGCTCCGGTTTCGAGCAATAGTAGCTCTAGAAGATATGGAATGCTATCTGCTTCCAATTTTATTCAGGCACCACTGTCTGCCTTGCTGGAGTACTCGGGCCTTCTGCGCGGCCGGTCCAGTCACCAAGAAGCCGAGTCTTTGATTGGGGGACGTAGCGCTGCCGCGTTCAGGGAGCACCTTCACGGTCAGGTGGATCAATCGAGCAATGATGGGGAGGTTTCGATTAGGATAATTGGTGCAGGGGAGCAAGAGCGTGATAGGGAAGGGGGTGGTTTAGTAGTTGGACAGTTGAGGGAGAGTAGTCTTCTGCAAAATGATGTCTCCGGACAACCAATAGCTAGGGTGGGATCTGTTACAGTGGTATCGGAGGAGGGTCAGGGAGATGGTAGGACGGATGTTGGTTCTGGAGAAGGCATGTCACAATCGATAAATGGAAGTGCTGATGGAGAAGCTGGTGATGGTGCTGGGGCTAATGGCAGGGATTCTTCGTACCAGAGATATGATATTCAGCAGGCAGCTAGGTGGATTGAGCAGGTCCTGCCCTTTTCCTTGCTTCTATTGGTGGTCTTCATTCGCCAGCATTTGCAAGGTTTCTTTGTTACTATCTGGATTGCTGCTGTTATGTTTAAGTCGAATGATATCCTAAGGAAACAGACAGCTTTGAAGGGAGAGAGGAAAATCTCTGTTCTAGTCGGCATCTCTATTGCATTCGCAGTTCATGTGATTGGTGTTTACTGGTGGTATCAGAATGATGATCTTCTGTACCCATTAGTTATGCTTCCTCCCAAAGTTATACCACCTTTCTGGCATGCTGTTTTTATCATCATGGTTAATGACACCTTGGTCCGGCAGGCAGCAATGGTGATCAAGTGTATTCTATTAATGTACTACAAGAACAGCAGAGGACGTAACTATCGTAAGCAGGGTCAAATGCTTACATTGGTTGAGTATCTACTTCTGTTGTACCGGGCCTTGTTACCAACACCAGTGTGGTATCGTTTCTTCTTGAACAAAGAATATGGTAGTCTCTTTTCTTCACTAATGACAGGGTTATATTTGACCTTCAAGCTTACGTCTGTTGTTGAGAAGGTAGTTTTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

380

Amino Acids

42.06

Weight (kDa)

8.49

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 881
Acc36I ACCTGC 1 cut(s) 562
AccB1I GGYRCC 1 cut(s) 106
AccII CGCG 2 cut(s) 147, 203
AccIII TCCGGA 1 cut(s) 362
AciI CCGC 2 cut(s) 147, 201
AclWI GGATC 2 cut(s) 240, 394
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 5 cut(s) 131, 530, 803, 926, 1004
AfeI AGCGCT 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 207, 885
AgsI TTSAA 3 cut(s) 703, 1048, 1105
AjnI CCWGG 1 cut(s) 10
AleI CACNNNNGTG 1 cut(s) 1027
AluBI AGCT 7 cut(s) 41, 63, 377, 491, 557, 698, 1108
AluI AGCT 7 cut(s) 41, 63, 377, 491, 557, 698, 1108
Alw21I GWGCWC 2 cut(s) 43, 216
Alw26I GTCTC 2 cut(s) 364, 1070
AlwI GGATC 2 cut(s) 240, 394
AlwNI CAGNNNCTG 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 133
Aor13HI TCCGGA 1 cut(s) 362
Aor51HI AGCGCT 1 cut(s) 196
AoxI GGCC 3 cut(s) 136, 148, 1008
ApeKI GCWGC 4 cut(s) 197, 554, 653, 893
AseI ATTAAT 1 cut(s) 920
AspLEI GCGC 3 cut(s) 10, 147, 197
AspS9I GGNCC 5 cut(s) 136, 153, 574, 883, 1008
AsuC2I CCSGG 1 cut(s) 1007
AsuHPI GGTGA 3 cut(s) 152, 506, 913
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 3 cut(s) 153, 574, 883
AxyI CCTNAGG 1 cut(s) 683
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 1025, 1057
BbsI GAAGAC 2 cut(s) 335, 598
Bbv12I GWGCWC 2 cut(s) 43, 216
BbvI GCAGC 4 cut(s) 184, 566, 640, 905
BccI CCATC 4 cut(s) 242, 416, 476, 491
BciT130I CCWGG 1 cut(s) 12
BclI TGATCA 1 cut(s) 903
BcnI CCSGG 1 cut(s) 1007
BcoDI GTCTC 2 cut(s) 364, 1070
BfaI CTAG 4 cut(s) 66, 378, 558, 728
BfoI RGCGCY 2 cut(s) 11, 198
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 6 cut(s) 148, 198, 201, 555, 654, 894
BlsI GCNGC 6 cut(s) 149, 199, 202, 556, 655, 895
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 12, 1007
Bme18I GGWCC 3 cut(s) 153, 574, 883
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 5 cut(s) 136, 153, 574, 883, 1008
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 12, 1007
BmsI GCATC 1 cut(s) 744
BpiI GAAGAC 2 cut(s) 335, 598
BpmI CTGGAG 2 cut(s) 146, 465
BpuMI CCSGG 1 cut(s) 1007
Bsa29I ATCGAT 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 879
BsaWI WCCGGW 2 cut(s) 43, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 885
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 3 cut(s) 156, 779, 1025
Bse21I CCTNAGG 1 cut(s) 683
Bse3DI GCAATG 2 cut(s) 250, 903
BseAI TCCGGA 1 cut(s) 362
BseBI CCWGG 1 cut(s) 12
BseCI ATCGAT 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 879
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 2 cut(s) 207, 885
BseMI GCAATG 2 cut(s) 250, 903
BseNI ACTGG 3 cut(s) 156, 779, 1025
BseRI GAGGAG 1 cut(s) 422
BseX3I CGGCCG 1 cut(s) 148
BseXI GCAGC 4 cut(s) 184, 566, 640, 905
BseYI CCCAGC 1 cut(s) 503
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 2 cut(s) 147, 203
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 3 cut(s) 138, 150, 1010
BshNI GGYRCC 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 464
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 2 cut(s) 43, 216
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 5 cut(s) 44, 151, 363, 886, 1006
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 207, 885
BsmAI GTCTC 2 cut(s) 364, 1070
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 2 cut(s) 84, 746
BsnI GGCC 3 cut(s) 138, 150, 1010
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 43, 216
Bsp13I TCCGGA 1 cut(s) 362
Bsp143I GATC 4 cut(s) 232, 386, 793, 903
BspACI CCGC 2 cut(s) 147, 201
BspANI GGCC 3 cut(s) 138, 150, 1010
BspDI ATCGAT 1 cut(s) 464
BspEI TCCGGA 1 cut(s) 362
BspFNI CGCG 2 cut(s) 147, 203
BspLI GGNNCC 1 cut(s) 108
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 2 cut(s) 240, 394
BspT107I GGYRCC 1 cut(s) 106
BsrDI GCAATG 2 cut(s) 250, 903
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 3 cut(s) 156, 779, 1025
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 879
BssMI GATC 4 cut(s) 232, 386, 793, 903
BssT1I CCWWGG 1 cut(s) 879
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 4 cut(s) 114, 224, 327, 397
BstAPI GCANNNNNTGC 1 cut(s) 577
BstC8I GCNNGC 4 cut(s) 552, 617, 849, 891
BstDEI CTNAG 1 cut(s) 683
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 2 cut(s) 147, 203
BstH2I RGCGCY 2 cut(s) 11, 198
BstHHI GCGC 3 cut(s) 10, 147, 197
BstKTI GATC 4 cut(s) 235, 389, 796, 906
BstMAI GTCTC 2 cut(s) 364, 1070
BstMBI GATC 4 cut(s) 232, 386, 793, 903
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 3 cut(s) 60, 144, 577
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 2 cut(s) 457, 851
BstSCI CCNGG 2 cut(s) 10, 1005
BstUI CGCG 2 cut(s) 147, 203
BstV1I GCAGC 4 cut(s) 184, 566, 640, 905
BstV2I GAAGAC 2 cut(s) 335, 598
BstX2I RGATCY 1 cut(s) 386
BstXI CCANNNNNNTGG 1 cut(s) 843
BstYI RGATCY 1 cut(s) 386
BstZI CGGCCG 1 cut(s) 148
Bsu15I ATCGAT 1 cut(s) 464
Bsu36I CCTNAGG 1 cut(s) 683
BsuRI GGCC 3 cut(s) 138, 150, 1010
BsuTUI ATCGAT 1 cut(s) 464
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 3 cut(s) 110, 402, 1032
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 4 cut(s) 552, 617, 849, 891
CaiI CAGNNNCTG 1 cut(s) 577
CfoI GCGC 3 cut(s) 10, 147, 197
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 5 cut(s) 136, 153, 574, 883, 1008
ClaI ATCGAT 1 cut(s) 464
Csp6I GTAC 5 cut(s) 130, 529, 802, 925, 1003
CviAII CATG 4 cut(s) 454, 758, 848, 865
CviQI GTAC 5 cut(s) 130, 529, 802, 925, 1003
DdeI CTNAG 1 cut(s) 683
DpnI GATC 4 cut(s) 234, 388, 795, 905
DpnII GATC 4 cut(s) 232, 386, 793, 903
DrdI GACNNNNNNGTC 1 cut(s) 881
DseDI GACNNNNNNGTC 1 cut(s) 881
EaeI YGGCCR 1 cut(s) 148
EagI CGGCCG 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 41
EclXI CGGCCG 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 879
Eco24I GRGCYC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 679
Eco47I GGWCC 3 cut(s) 153, 574, 883
Eco47III AGCGCT 1 cut(s) 196
Eco52I CGGCCG 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 10
EcoRV GATATC 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 879
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 879
FaeI CATG 4 cut(s) 457, 761, 851, 868
FaqI GGGAC 1 cut(s) 201
FatI CATG 4 cut(s) 453, 757, 847, 864
FbaI TGATCA 1 cut(s) 903
Fnu4HI GCNGC 6 cut(s) 148, 198, 201, 555, 654, 894
FokI GGATG 1 cut(s) 446
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 6 cut(s) 148, 198, 201, 555, 654, 894
FspBI CTAG 4 cut(s) 66, 378, 558, 728
GlaI GCGC 3 cut(s) 9, 146, 196
GluI GCNGC 6 cut(s) 148, 198, 201, 555, 654, 894
GsaI CCCAGC 1 cut(s) 507
GsuI CTGGAG 2 cut(s) 146, 465
HaeII RGCGCY 2 cut(s) 11, 198
HaeIII GGCC 3 cut(s) 138, 150, 1010
HapII CCGG 5 cut(s) 44, 151, 363, 886, 1006
HhaI GCGC 3 cut(s) 10, 147, 197
Hin1II CATG 4 cut(s) 457, 761, 851, 868
Hin6I GCGC 3 cut(s) 8, 145, 195
HinP1I GCGC 3 cut(s) 8, 145, 195
HindIII AAGCTT 1 cut(s) 1106
HinfI GANTC 3 cut(s) 29, 173, 521
HpaII CCGG 5 cut(s) 44, 151, 363, 886, 1006
HphI GGTGA 3 cut(s) 152, 506, 913
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 2 cut(s) 406, 786
Hpy188III TCNNGA 6 cut(s) 26, 66, 363, 444, 646, 1045
Hpy8I GTNNAC 1 cut(s) 772
HpyAV CCTTC 7 cut(s) 149, 227, 296, 443, 697, 1111, 1120
HpyCH4III ACNGT 4 cut(s) 114, 224, 327, 397
HpyCH4IV ACGT 3 cut(s) 190, 946, 1112
HpyCH4V TGCA 4 cut(s) 278, 349, 625, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 144, 577
HpyF3I CTNAG 1 cut(s) 683
HpySE526I ACGT 3 cut(s) 190, 946, 1112
Hsp92II CATG 4 cut(s) 457, 761, 851, 868
HspAI GCGC 3 cut(s) 8, 145, 195
Kpn2I TCCGGA 1 cut(s) 362
Ksp22I TGATCA 1 cut(s) 903
Kzo9I GATC 4 cut(s) 232, 386, 793, 903
LmnI GCTCC 3 cut(s) 46, 211, 283
Lsp1109I GCAGC 4 cut(s) 184, 566, 640, 905
LweI GCATC 1 cut(s) 744
MaeI CTAG 4 cut(s) 66, 378, 558, 728
MaeII ACGT 3 cut(s) 190, 946, 1112
MaeIII GTNAC 6 cut(s) 158, 391, 456, 637, 947, 1014
MalI GATC 4 cut(s) 234, 388, 795, 905
MboI GATC 4 cut(s) 232, 386, 793, 903
MboII GAAGA 7 cut(s) 81, 335, 516, 598, 788, 1033, 1065
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 43, 216
MluCI AATT 2 cut(s) 94, 270
MlyI GAGTC 2 cut(s) 23, 182
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 7 cut(s) 247, 324, 400, 403, 705, 831, 935
MroI TCCGGA 1 cut(s) 362
MseI TTAA 4 cut(s) 666, 870, 920, 1141
MslI CAYNNNNRTG 1 cut(s) 1027
MspI CCGG 5 cut(s) 44, 151, 363, 886, 1006
MspR9I CCNGG 2 cut(s) 12, 1007
Mva1269I GAATGC 2 cut(s) 84, 746
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 2 cut(s) 147, 203
MwoI GCNNNNNNNGC 3 cut(s) 60, 144, 577
NciI CCSGG 1 cut(s) 1007
NdeII GATC 4 cut(s) 232, 386, 793, 903
NlaIII CATG 4 cut(s) 457, 761, 851, 868
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 158, 456
NspI RCATGY 2 cut(s) 457, 851
OliI CACNNNNGTG 1 cut(s) 1027
PaeI GCATGC 1 cut(s) 851
PcsI WCGNNNNNNNCGW 1 cut(s) 952
PctI GAATGC 2 cut(s) 84, 746
PfeI GAWTC 1 cut(s) 521
PkrI GCNGC 6 cut(s) 149, 199, 202, 556, 655, 895
PleI GAGTC 2 cut(s) 23, 181
PpsI GAGTC 2 cut(s) 23, 181
PpuMI RGGWCCY 1 cut(s) 574
PshBI ATTAAT 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 5 cut(s) 136, 153, 574, 883, 1008
PspPPI RGGWCCY 1 cut(s) 574
PstNI CAGNNNCTG 1 cut(s) 577
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 5 cut(s) 131, 530, 803, 926, 1004
RsaNI GTAC 5 cut(s) 130, 529, 802, 925, 1003
RseI CAYNNNNRTG 1 cut(s) 1027
SacI GAGCTC 1 cut(s) 43
SaqAI TTAA 4 cut(s) 666, 870, 920, 1141
SatI GCNGC 6 cut(s) 148, 198, 201, 555, 654, 894
Sau3AI GATC 4 cut(s) 232, 386, 793, 903
Sau96I GGNCC 5 cut(s) 136, 153, 574, 883, 1008
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 2 cut(s) 23, 182
ScrFI CCNGG 2 cut(s) 12, 1007
SduI GDGCHC 2 cut(s) 43, 216
SfaNI GCATC 1 cut(s) 744
SinI GGWCC 3 cut(s) 153, 574, 883
SmiMI CAYNNNNRTG 1 cut(s) 1027
SphI GCATGC 1 cut(s) 851
Sse9I AATT 2 cut(s) 94, 270
SsiI CCGC 2 cut(s) 147, 201
SspMI CTAG 4 cut(s) 66, 378, 558, 728
SstI GAGCTC 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 10, 1005
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 4 cut(s) 114, 224, 327, 397
TaiI ACGT 3 cut(s) 193, 949, 1115
TaqI TCGA 5 cut(s) 50, 239, 260, 464, 671
TasI AATT 2 cut(s) 94, 270
TatI WGTACW 2 cut(s) 129, 924
TauI GCSGC 2 cut(s) 150, 203
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 4 cut(s) 666, 870, 920, 1141
Tru9I TTAA 4 cut(s) 666, 870, 920, 1141
TscAI CASTG 3 cut(s) 117, 402, 1032
TseFI GTSAC 2 cut(s) 158, 456
TseI GCWGC 4 cut(s) 197, 554, 653, 893
Tsp45I GTSAC 2 cut(s) 158, 456
TspDTI ATGAA 2 cut(s) 598, 746
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 3 cut(s) 117, 402, 1032
VpaK11BI GGWCC 3 cut(s) 153, 574, 883
VspI ATTAAT 1 cut(s) 920
XbaI TCTAGA 1 cut(s) 65
XceI RCATGY 2 cut(s) 457, 851
XcmI CCANNNNNNNNNTGG 1 cut(s) 1026
XspI CTAG 4 cut(s) 66, 378, 558, 728
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.