Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000185.1

Orthogroup ID

OG0003923

Physical Location & Seq

Genomic Coordinates Forward (+)

2652 .. 3293

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000185.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggaagcgccaggtggcaatcatctggactcgtacagagctccggtttcgagcaatagtagctctagaagatatggaatgctatctgcttccaattttattcaggcaccactgtctgccttgctggagtactcgggccttctgcgcggccggtccagtcaccaagaagccgagtctttgattgggggacggagcgctgccgcgttcagggagcaccatcacggtcaggtggatcaatcgagcaatgatggggaggtttcgattaggataattggtgcaggggagcaagagcatgatagggaagggggtggtttagtagttggacagttgagggagagtagtcttctgcaaaatgatgtttccggacagccaatagctagggtgggctctgttacagtggtatcggaggagggtcagggagatggtaggacggatgttggttctggagacggcatgtcacaatcgatgaatggaagtgctgatggagaagctggtgatggtgctggggctaatggcagggattcttcgtaccagagatatgatattcagcaggcagctaggtggattgagcaggtcctgcccttttccttgcttctattggtggtcttcattcgccagcatttgcaaggtaagtgtcttcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

214

Amino Acids

22.68

Weight (kDa)

5.19

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01960
fragaria_vesca	FvH4_6g09390 FvH4_7g26260 FvH4_7g26260
malus_domestica	MD01G1171400.v1.1 MD04G1178100.v1.1 MD07G1237600.v1.1 MD12G1193700.v1.1
prunus_persica	Prupe.2G266800_v2.0.a1 Prupe.2G266800_v2.0.a1 Prupe.6G298000_v2.0.a1
pyrus_communis	pycom01g18360 pycom04g15710 pycom07g21390 pycom12g17990
rosa_chinensis	RchiOBHm_Chr1g0372711 RchiOBHm_Chr3g0459771
rosa_laevigata	RLG00000025058 RLG00000026877
rosa_multiflora	Rmu_sc0009717.1_g000009 Rmu_ssc0000185.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284730 Rroxscaffold_6G00419970
rosa_rugosa	Rorug01G0373800 Rorug03G0038100
rosa_samantha	Rh1AG382600 Rh1BG346100 Rh1CG359400 Rh1DG377200 Rh3AG096800 Rh3BG099500 Rh3CG101400 Rh3DG100800
rosa_wichuraiana	Rw1G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	106
AccII	CGCG	2 cut(s)	147, 203
AccIII	TCCGGA	1 cut(s)	362
AciI	CCGC	2 cut(s)	147, 201
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	148
AfaI	GTAC	3 cut(s)	35, 131, 530
AfeI	AGCGCT	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	641
AhdI	GACNNNNNGTC	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	5 cut(s)	41, 63, 377, 491, 557
AluI	AGCT	5 cut(s)	41, 63, 377, 491, 557
Alw21I	GWGCWC	2 cut(s)	43, 216
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	577
Ama87I	CYCGRG	1 cut(s)	133
Aor13HI	TCCGGA	1 cut(s)	362
Aor51HI	AGCGCT	1 cut(s)	196
AoxI	GGCC	2 cut(s)	136, 148
ApeKI	GCWGC	2 cut(s)	197, 554
AspLEI	GCGC	3 cut(s)	10, 147, 197
AspS9I	GGNCC	3 cut(s)	136, 153, 574
AsuHPI	GGTGA	2 cut(s)	152, 506
AvaI	CYCGRG	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	153, 574
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	43, 389
BbsI	GAAGAC	3 cut(s)	335, 598, 629
Bbv12I	GWGCWC	2 cut(s)	43, 216
BbvI	GCAGC	2 cut(s)	184, 566
BccI	CCATC	5 cut(s)	225, 242, 416, 476, 491
BceAI	ACGGC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	3 cut(s)	66, 378, 558
BfoI	RGCGCY	2 cut(s)	11, 198
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	4 cut(s)	148, 198, 201, 555
BlsI	GCNGC	4 cut(s)	149, 199, 202, 556
BmcAI	AGTACT	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	2 cut(s)	153, 574
BmeRI	GACNNNNNGTC	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	133
BmgT120I	GGNCC	3 cut(s)	136, 153, 574
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	12
BpiI	GAAGAC	3 cut(s)	335, 598, 629
BpmI	CTGGAG	2 cut(s)	146, 465
Bsa29I	ATCGAT	1 cut(s)	464
BsaWI	WCCGGW	2 cut(s)	43, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	250
BseAI	TCCGGA	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	12
BseCI	ATCGAT	1 cut(s)	464
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	422
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	184, 566
BseYI	CCCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	2 cut(s)	147, 203
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	138, 150
BshNI	GGYRCC	1 cut(s)	106
BshVI	ATCGAT	1 cut(s)	464
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	2 cut(s)	43, 216
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	3 cut(s)	44, 151, 363
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	441
BsmBI	CGTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	2 cut(s)	138, 150
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	3 cut(s)	43, 216, 389
Bsp13I	TCCGGA	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	2 cut(s)	147, 201
BspANI	GGCC	2 cut(s)	138, 150
BspDI	ATCGAT	1 cut(s)	464
BspEI	TCCGGA	1 cut(s)	362
BspFNI	CGCG	2 cut(s)	147, 203
BspLI	GGNNCC	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	150
BssMI	GATC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	4 cut(s)	114, 224, 327, 397
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	552, 617
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	2 cut(s)	147, 203
BstH2I	RGCGCY	2 cut(s)	11, 198
BstHHI	GCGC	3 cut(s)	10, 147, 197
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	232
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 144, 577
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	10
BstUI	CGCG	2 cut(s)	147, 203
BstV1I	GCAGC	2 cut(s)	184, 566
BstV2I	GAAGAC	3 cut(s)	335, 598, 629
BstZI	CGGCCG	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	138, 150
BsuTUI	ATCGAT	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	110, 402
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	2 cut(s)	552, 617
CaiI	CAGNNNCTG	1 cut(s)	577
CfoI	GCGC	3 cut(s)	10, 147, 197
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	3 cut(s)	136, 153, 574
ClaI	ATCGAT	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	34, 130, 529
CviAII	CATG	2 cut(s)	293, 454
CviQI	GTAC	3 cut(s)	34, 130, 529
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DriI	GACNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	148
EagI	CGGCCG	1 cut(s)	148
Eam1105I	GACNNNNNGTC	1 cut(s)	454
Ecl136II	GAGCTC	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	148
Eco24I	GRGCYC	2 cut(s)	43, 389
Eco47I	GGWCC	2 cut(s)	153, 574
Eco47III	AGCGCT	1 cut(s)	196
Eco52I	CGGCCG	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	10
EcoT38I	GRGCYC	2 cut(s)	43, 389
Esp3I	CGTCTC	1 cut(s)	441
FaeI	CATG	2 cut(s)	296, 457
FaiI	YATR	4 cut(s)	75, 294, 455, 540
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	2 cut(s)	292, 453
Fnu4HI	GCNGC	4 cut(s)	148, 198, 201, 555
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	2 cut(s)	43, 389
Fsp4HI	GCNGC	4 cut(s)	148, 198, 201, 555
FspBI	CTAG	3 cut(s)	66, 378, 558
GlaI	GCGC	3 cut(s)	9, 146, 196
GluI	GCNGC	4 cut(s)	148, 198, 201, 555
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	2 cut(s)	146, 465
HaeII	RGCGCY	2 cut(s)	11, 198
HaeIII	GGCC	2 cut(s)	138, 150
HapII	CCGG	3 cut(s)	44, 151, 363
HhaI	GCGC	3 cut(s)	10, 147, 197
Hin1II	CATG	2 cut(s)	296, 457
Hin6I	GCGC	3 cut(s)	8, 145, 195
HinP1I	GCGC	3 cut(s)	8, 145, 195
HinfI	GANTC	3 cut(s)	29, 173, 521
HpaII	CCGG	3 cut(s)	44, 151, 363
HphI	GGTGA	2 cut(s)	152, 506
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	4 cut(s)	26, 66, 363, 444
HpyAV	CCTTC	2 cut(s)	149, 296
HpyCH4III	ACNGT	4 cut(s)	114, 224, 327, 397
HpyCH4V	TGCA	3 cut(s)	278, 349, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 144, 577
Hsp92II	CATG	2 cut(s)	296, 457
HspAI	GCGC	3 cut(s)	8, 145, 195
Kpn2I	TCCGGA	1 cut(s)	362
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	4 cut(s)	46, 192, 211, 283
Lsp1109I	GCAGC	2 cut(s)	184, 566
MaeI	CTAG	3 cut(s)	66, 378, 558
MaeIII	GTNAC	3 cut(s)	158, 391, 456
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	5 cut(s)	81, 335, 516, 598, 629
MhlI	GDGCHC	3 cut(s)	43, 216, 389
MluCI	AATT	2 cut(s)	94, 270
MlyI	GAGTC	2 cut(s)	23, 182
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	4 cut(s)	247, 324, 400, 403
MroI	TCCGGA	1 cut(s)	362
MspI	CCGG	3 cut(s)	44, 151, 363
MspR9I	CCNGG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	2 cut(s)	147, 203
MwoI	GCNNNNNNNGC	3 cut(s)	60, 144, 577
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	296, 457
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	158, 456
NspI	RCATGY	1 cut(s)	457
PctI	GAATGC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	4 cut(s)	149, 199, 202, 556
PleI	GAGTC	2 cut(s)	23, 181
PpsI	GAGTC	2 cut(s)	23, 181
PpuMI	RGGWCCY	1 cut(s)	574
Psp124BI	GAGCTC	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	3 cut(s)	136, 153, 574
PspPPI	RGGWCCY	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	577
RsaI	GTAC	3 cut(s)	35, 131, 530
RsaNI	GTAC	3 cut(s)	34, 130, 529
SacI	GAGCTC	1 cut(s)	43
SatI	GCNGC	4 cut(s)	148, 198, 201, 555
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	3 cut(s)	136, 153, 574
ScaI	AGTACT	1 cut(s)	131
SchI	GAGTC	2 cut(s)	23, 182
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	3 cut(s)	43, 216, 389
SinI	GGWCC	2 cut(s)	153, 574
Sse9I	AATT	2 cut(s)	94, 270
SsiI	CCGC	2 cut(s)	147, 201
SspMI	CTAG	3 cut(s)	66, 378, 558
SstI	GAGCTC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	4 cut(s)	114, 224, 327, 397
TaqI	TCGA	4 cut(s)	50, 239, 260, 464
TasI	AATT	2 cut(s)	94, 270
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	2 cut(s)	150, 203
TfiI	GAWTC	1 cut(s)	521
TscAI	CASTG	2 cut(s)	117, 402
TseFI	GTSAC	2 cut(s)	158, 456
TseI	GCWGC	2 cut(s)	197, 554
Tsp45I	GTSAC	2 cut(s)	158, 456
TspDTI	ATGAA	2 cut(s)	482, 598
TspGWI	ACGGA	2 cut(s)	205, 446
TspRI	CASTG	2 cut(s)	117, 402
VpaK11BI	GGWCC	2 cut(s)	153, 574
XbaI	TCTAGA	1 cut(s)	65
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	3 cut(s)	66, 378, 558
ZrmI	AGTACT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.