Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004817

Physical Location & Seq

Genomic Coordinates Reverse (-)

21121220 .. 21126562

Gene Structure 5343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G249200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGTCAGGAGGGGGCACACAGAAGAGCTTACGGAAAGCACTTGGAGCCCTCAAGGACACCACCACAGTTTCGTTGGCTAAAGTCAATAGTGATTACAAGGAATTGGATGTTGCTATAGTCAAAGCTACAAATCATGTTGAGCGTCCAGCTAAGGAAAAATATATCAGAGCCATTTTTTCTGCCGTTTCTGCTACAAGACCTCGGGCTGATGTCGCATACTGCATCCATGCTCTTGCAAGAAGGTTATCAAAGACACATAATTGGGCGGTTGCATTGAAAACTTTAGTTGTTATTCATCGTGCTTTGAGGGAAGTAGACCCTACTTTTCATGAAGAACTCATGAATTATGGTAGAAGTCGAAGCCATATGCTTAACTTGGCTCATTTCAAAGATGATTCCAGTCCAAATGCATGGGATTATTCCAACTGGATTCGTACTTATGCCTTGTTCTTGGAGGAGAGACTGGAATGCTTCCGTGTGTTGAAATATGACGTTGAGATGGATCGCCCAAGGACCAAAGATTTGGATACTGTCGAATTGCTTGAGCATTTGCCTGCTTTGCAACAGCTTCTTTTTCGTGTACTTGGTTGCCAGCCGCAAGGGGCAGCAGTTCATAATTTTGTGGTTCAATTAGCACTTCAAATGGTTGCTTCTGAAAGCATCAAGATTTATCAAGCTATAAGTGATGGAACGGTCAATTTGGTTGACAAGTTCTTTGAGATGCAACGCCATGATGCTGTGAAAGCCCTGGATATATATCGGAGGGCAGGGCAGCAGGCAGAGAGACTTTCAGAGTTTTACGAAGTATGTAAAAGTCTTGATATTGGGCGTGGAGACAAGTTTATCAAGATTGAGCAGCCACCTGCATCATTTTTACAAGCCATGGAAGAATACGTGAGAGAAGCTCCCCGGGTCTCAACAGTTCGCAAGGATCAGGTGGTTGACAATAAAATTAATGCCCCCAAGGAAGTCTTGGCTATAGAGTACAAAAACACCCAAGAGGCGGAGGCACGCCCACCTTCACCACCTCCACCTGAACCAGTGAAAGTGGAAGCACCTATAGCTGAACCTCCTGACCTGCTGGGTTTGAATGATCCTGTTCCAGATACCAAAGATTTGGATGAGAAGAATGCTATGGCTTTAGCTATTGTTCCAGTTTCGGATCAACCACCTTCTACAGCTCCAATTCACGCAAATGGAACTACGGGTTGGGAATTGGCACTTGTTACAGCACCAAGCTCAAATGAGAGTGCCACGGCTGCTAGCAAACTGGCGGGCGGGTTGGACTTGCTTACACTAGATAGCCTATACGATGATGCAATCAGAAGAAACCATCAGAATGTGAGCTACAACCCATGGGAGCCTGTTCCAGTGGCTGGTGCCATGATGCAACAACCAGTTCATGATCCCTTTTATGCATCCAACACAATGGCTGCACCGCCTTCTGTGCAGATGGCAGCAATGGCCAACCACCAGCAGGCCTTCATGTTGCAGCAACAGCAGCAGATGATGATGATGGGTCCACAACAGCAGCAGTCTTTGAACCCTTTTGGAAATCCTCATGCGGCCACTACCCACCCCTATGGCCCCGGTGTGCCTGTCCAAGCATACAATCCATATACCGGCCTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

545

Amino Acids

60.47

Weight (kDa)

6.08

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35200 AT5G35200
fragaria_vesca	FvH4_1g02540 FvH4_1g02540 FvH4_1g02540
malus_domestica	MD02G1022900.v1.1 MD15G1165600.v1.1
prunus_persica	Prupe.7G249200_v2.0.a1 Prupe.7G249200_v2.0.a1
pyrus_communis	pycom15g14840
rosa_chinensis	RchiOBHm_Chr1g0354531 RchiOBHm_Chr2g0087571
rosa_laevigata	RLG00000015879
rosa_multiflora	Rmu_co7995458.1_g000001 Rmu_sc0002299.1_g000024 Rmu_sc0003071.1_g000007 Rmu_sc0006059.1_g000023
rosa_roxburghii	Rroxscaffold_2G00153460
rosa_rugosa	Rorug01G0476600 Rorug06G0009000
rosa_samantha	Rh2AG030100 Rh2AG444300 Rh2BG030000 Rh2CG030300 Rh2CG431200 Rh2DG030200 Rh2DG503600 Rh4AG121800
rosa_wichuraiana	Rw1G014010 Rw2G002390 Rw5G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	871
Acc36I	ACCTGC	2 cut(s)	871, 1086
AccB1I	GGYRCC	1 cut(s)	1379
AccB7I	CCANNNNNTGG	1 cut(s)	1376
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	7 cut(s)	266, 596, 1004, 1274, 1278, 1439, 1565
AclWI	GGATC	5 cut(s)	510, 939, 1088, 1170, 1400
AcoI	YGGCCR	2 cut(s)	1464, 1566
AfaI	GTAC	3 cut(s)	436, 582, 986
AfiI	CCNNNNNNNGG	4 cut(s)	1003, 1376, 1477, 1622
AgsI	TTSAA	7 cut(s)	277, 388, 484, 629, 641, 1090, 1543
AjnI	CCWGG	1 cut(s)	747
AjuI	GAANNNNNNNTTGG	2 cut(s)	1192, 1224
Alw26I	GTCTC	4 cut(s)	454, 778, 828, 919
AlwI	GGATC	5 cut(s)	510, 939, 1088, 1170, 1400
AlwNI	CAGNNNCTG	1 cut(s)	1376
Ama87I	CYCGRG	2 cut(s)	201, 909
AoxI	GGCC	5 cut(s)	1464, 1479, 1566, 1585, 1624
ApeKI	GCWGC	9 cut(s)	605, 772, 856, 1259, 1433, 1457, 1492, 1501, 1531
ArsI	GACNNNNNNTTYG	4 cut(s)	505, 537, 698, 730
AseI	ATTAAT	1 cut(s)	954
AspS9I	GGNCC	3 cut(s)	513, 1520, 1586
AsuC2I	CCSGG	3 cut(s)	910, 911, 1590
AsuHPI	GGTGA	1 cut(s)	1014
AsuNHI	GCTAGC	1 cut(s)	1262
AvaI	CYCGRG	2 cut(s)	201, 909
AvaII	GGWCC	2 cut(s)	513, 1520
BaeGI	GKGCMC	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	1466
BanI	GGYRCC	1 cut(s)	1379
BanII	GRGCYC	1 cut(s)	49
BbvI	GCAGC	9 cut(s)	617, 784, 868, 1246, 1420, 1469, 1504, 1513, 1543
BccI	CCATC	5 cut(s)	493, 680, 1341, 1447, 1510
BceAI	ACGGC	2 cut(s)	167, 1272
BciT130I	CCWGG	1 cut(s)	749
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	3 cut(s)	910, 911, 1590
BcoDI	GTCTC	4 cut(s)	454, 778, 828, 919
BfaI	CTAG	2 cut(s)	1263, 1298
BfmI	CTRYAG	4 cut(s)	114, 978, 1059, 1176
BfuAI	ACCTGC	2 cut(s)	871, 1086
BfuI	GTATCC	1 cut(s)	520
Bme1390I	CCNGG	4 cut(s)	749, 910, 911, 1590
Bme18I	GGWCC	2 cut(s)	513, 1520
BmeT110I	CYCGRG	2 cut(s)	201, 909
BmgT120I	GGNCC	3 cut(s)	513, 1520, 1586
BmiI	GGNNCC	5 cut(s)	46, 1362, 1381, 1521, 1588
BmrFI	CCNGG	4 cut(s)	749, 910, 911, 1590
BmsI	GCATC	8 cut(s)	231, 669, 711, 724, 875, 1306, 1377, 1427
BmtI	GCTAGC	1 cut(s)	1266
BplI	GAGNNNNNCTC	2 cut(s)	889, 921
Bpu10I	CCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	35, 563
BpuMI	CCSGG	3 cut(s)	910, 911, 1590
BsaAI	YACGTR	1 cut(s)	895
BsaBI	GATNNNNATC	1 cut(s)	756
BsaI	GGTCTC	1 cut(s)	919
Bsc4I	CCNNNNNNNGG	4 cut(s)	1003, 1376, 1477, 1622
Bse118I	RCCGGY	1 cut(s)	1622
Bse1I	ACTGG	8 cut(s)	399, 431, 468, 1040, 1154, 1275, 1370, 1397
Bse3DI	GCAATG	1 cut(s)	1467
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	749
BseGI	GGATG	4 cut(s)	112, 222, 1126, 1418
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	4 cut(s)	1003, 1376, 1477, 1622
BseMI	GCAATG	1 cut(s)	1467
BseNI	ACTGG	8 cut(s)	399, 431, 468, 1040, 1154, 1275, 1370, 1397
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	9 cut(s)	617, 784, 868, 1246, 1420, 1469, 1504, 1513, 1543
BseYI	CCCAGC	1 cut(s)	1081
BsgI	GTGCAG	2 cut(s)	1419, 1469
BshFI	GGCC	5 cut(s)	1466, 1481, 1568, 1587, 1626
BshNI	GGYRCC	1 cut(s)	1379
BsiHKCI	CYCGRG	2 cut(s)	201, 909
BsiSI	CCGG	3 cut(s)	910, 1590, 1623
BslI	CCNNNNNNNGG	4 cut(s)	1003, 1376, 1477, 1622
BsmAI	GTCTC	4 cut(s)	454, 778, 828, 919
BsmI	GAATGC	2 cut(s)	473, 1135
BsnI	GGCC	5 cut(s)	1466, 1481, 1568, 1587, 1626
Bso31I	GGTCTC	1 cut(s)	919
BsoBI	CYCGRG	2 cut(s)	201, 909
Bsp1286I	GDGCHC	2 cut(s)	17, 49
Bsp143I	GATC	5 cut(s)	502, 931, 1093, 1162, 1405
Bsp19I	CCATGG	2 cut(s)	882, 1355
BspACI	CCGC	7 cut(s)	266, 596, 1004, 1274, 1278, 1439, 1565
BspANI	GGCC	5 cut(s)	1466, 1481, 1568, 1587, 1626
BspHI	TCATGA	3 cut(s)	328, 339, 1402
BspLI	GGNNCC	5 cut(s)	46, 1362, 1381, 1521, 1588
BspMI	ACCTGC	2 cut(s)	871, 1086
BspOI	GCTAGC	1 cut(s)	1266
BspPI	GGATC	5 cut(s)	510, 939, 1088, 1170, 1400
BspQI	GCTCTTC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	1379
BspTNI	GGTCTC	1 cut(s)	919
BsrDI	GCAATG	1 cut(s)	1467
BsrFI	RCCGGY	1 cut(s)	1622
BsrI	ACTGG	8 cut(s)	399, 431, 468, 1040, 1154, 1275, 1370, 1397
BssAI	RCCGGY	1 cut(s)	1622
BssMI	GATC	5 cut(s)	502, 931, 1093, 1162, 1405
BssT1I	CCWWGG	4 cut(s)	509, 882, 963, 1355
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	4 cut(s)	67, 532, 694, 922
Bst6I	CTCTTC	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	895
BstC8I	GCNNGC	7 cut(s)	555, 593, 777, 1012, 1264, 1276, 1479
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	3 cut(s)	882, 1254, 1355
BstF5I	GGATG	4 cut(s)	112, 222, 1126, 1418
BstKTI	GATC	5 cut(s)	505, 934, 1096, 1165, 1408
BstMAI	GTCTC	4 cut(s)	454, 778, 828, 919
BstMBI	GATC	5 cut(s)	502, 931, 1093, 1162, 1405
BstNI	CCWGG	1 cut(s)	749
BstSCI	CCNGG	4 cut(s)	747, 908, 909, 1588
BstSFI	CTRYAG	4 cut(s)	114, 978, 1059, 1176
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	9 cut(s)	617, 784, 868, 1246, 1420, 1469, 1504, 1513, 1543
BstXI	CCANNNNNNTGG	5 cut(s)	411, 523, 1117, 1429, 1583
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	5 cut(s)	1466, 1481, 1568, 1587, 1626
BtgI	CCRYGG	3 cut(s)	882, 1254, 1355
BtsCI	GGATG	4 cut(s)	112, 222, 1126, 1418
BtsIMutI	CAGTG	2 cut(s)	1047, 1377
BveI	ACCTGC	2 cut(s)	871, 1086
Cac8I	GCNNGC	7 cut(s)	555, 593, 777, 1012, 1264, 1276, 1479
CaiI	CAGNNNCTG	1 cut(s)	1376
CciI	TCATGA	3 cut(s)	328, 339, 1402
Cfr10I	RCCGGY	1 cut(s)	1622
Cfr13I	GGNCC	3 cut(s)	513, 1520, 1586
Cfr9I	CCCGGG	1 cut(s)	909
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	435, 581, 985
CviQI	GTAC	3 cut(s)	435, 581, 985
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	5 cut(s)	504, 933, 1095, 1164, 1407
DpnII	GATC	5 cut(s)	502, 931, 1093, 1162, 1405
EaeI	YGGCCR	2 cut(s)	1464, 1566
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	1019
Eco130I	CCWWGG	4 cut(s)	509, 882, 963, 1355
Eco147I	AGGCCT	1 cut(s)	1481
Eco24I	GRGCYC	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	919
Eco47I	GGWCC	2 cut(s)	513, 1520
Eco88I	CYCGRG	2 cut(s)	201, 909
EcoRII	CCWGG	1 cut(s)	747
EcoT14I	CCWWGG	4 cut(s)	509, 882, 963, 1355
EcoT22I	ATGCAT	2 cut(s)	412, 1420
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	4 cut(s)	509, 882, 963, 1355
FalI	AAGNNNNNCTT	2 cut(s)	956, 988
FauI	CCCGC	2 cut(s)	1267, 1271
FauNDI	CATATG	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	315
FokI	GGATG	4 cut(s)	119, 209, 1133, 1405
FriOI	GRGCYC	1 cut(s)	49
FspBI	CTAG	2 cut(s)	1263, 1298
GsaI	CCCAGC	1 cut(s)	1085
HaeIII	GGCC	5 cut(s)	1466, 1481, 1568, 1587, 1626
HapII	CCGG	3 cut(s)	910, 1590, 1623
HgaI	GACGC	1 cut(s)	131
HincII	GTYRAC	2 cut(s)	706, 943
HindII	GTYRAC	2 cut(s)	706, 943
HinfI	GANTC	2 cut(s)	395, 430
HpaII	CCGG	3 cut(s)	910, 1590, 1623
HphI	GGTGA	1 cut(s)	1014
Hpy166II	GTNNAC	5 cut(s)	316, 581, 706, 943, 1523
Hpy188I	TCNGA	7 cut(s)	167, 655, 762, 793, 1162, 1325, 1338
Hpy188III	TCNNGA	9 cut(s)	6, 329, 340, 664, 818, 847, 1073, 1103, 1403
Hpy8I	GTNNAC	5 cut(s)	316, 581, 706, 943, 1523
HpyAV	CCTTC	5 cut(s)	234, 1029, 1182, 1452, 1492
HpyCH4III	ACNGT	4 cut(s)	67, 532, 694, 922
HpyCH4IV	ACGT	2 cut(s)	492, 894
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	492, 894
Kzo9I	GATC	5 cut(s)	502, 931, 1093, 1162, 1405
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	4 cut(s)	44, 910, 1186, 1360
Lsp1109I	GCAGC	9 cut(s)	617, 784, 868, 1246, 1420, 1469, 1504, 1513, 1543
LweI	GCATC	8 cut(s)	231, 669, 711, 724, 875, 1306, 1377, 1427
MaeI	CTAG	2 cut(s)	1263, 1298
MaeII	ACGT	2 cut(s)	492, 894
MaeIII	GTNAC	1 cut(s)	1225
MalI	GATC	5 cut(s)	504, 933, 1095, 1164, 1407
MboI	GATC	5 cut(s)	502, 931, 1093, 1162, 1405
MboII	GAAGA	5 cut(s)	34, 344, 899, 1138, 1338
MhlI	GDGCHC	2 cut(s)	17, 49
MlsI	TGGCCA	1 cut(s)	1466
MluNI	TGGCCA	1 cut(s)	1466
MmeI	TCCRAC	3 cut(s)	447, 1263, 1446
Mox20I	TGGCCA	1 cut(s)	1466
Mph1103I	ATGCAT	2 cut(s)	412, 1420
MscI	TGGCCA	1 cut(s)	1466
MseI	TTAA	2 cut(s)	372, 954
MslI	CAYNNNNRTG	3 cut(s)	1194, 1338, 1581
Msp20I	TGGCCA	1 cut(s)	1466
MspI	CCGG	3 cut(s)	910, 1590, 1623
MspR9I	CCNGG	4 cut(s)	749, 910, 911, 1590
Mva1269I	GAATGC	2 cut(s)	473, 1135
MvaI	CCWGG	1 cut(s)	749
NciI	CCSGG	3 cut(s)	910, 911, 1590
NcoI	CCATGG	2 cut(s)	882, 1355
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	5 cut(s)	502, 931, 1093, 1162, 1405
NheI	GCTAGC	1 cut(s)	1262
NlaIV	GGNNCC	5 cut(s)	46, 1362, 1381, 1521, 1588
NsiI	ATGCAT	2 cut(s)	412, 1420
PagI	TCATGA	3 cut(s)	328, 339, 1402
PaqCI	CACCTGC	1 cut(s)	871
PceI	AGGCCT	1 cut(s)	1481
PciSI	GCTCTTC	1 cut(s)	17
PctI	GAATGC	2 cut(s)	473, 1135
PfeI	GAWTC	2 cut(s)	395, 430
PflMI	CCANNNNNTGG	1 cut(s)	1376
Ppu21I	YACGTR	1 cut(s)	895
PshBI	ATTAAT	1 cut(s)	954
Psp6I	CCWGG	1 cut(s)	747
PspFI	CCCAGC	1 cut(s)	1081
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	5 cut(s)	46, 1362, 1381, 1521, 1588
PspPI	GGNCC	3 cut(s)	513, 1520, 1586
PstNI	CAGNNNCTG	1 cut(s)	1376
RsaI	GTAC	3 cut(s)	436, 582, 986
RsaNI	GTAC	3 cut(s)	435, 581, 985
RseI	CAYNNNNRTG	3 cut(s)	1194, 1338, 1581
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	372, 954
Sau3AI	GATC	5 cut(s)	502, 931, 1093, 1162, 1405
Sau96I	GGNCC	3 cut(s)	513, 1520, 1586
ScrFI	CCNGG	4 cut(s)	749, 910, 911, 1590
SduI	GDGCHC	2 cut(s)	17, 49
SfaNI	GCATC	8 cut(s)	231, 669, 711, 724, 875, 1306, 1377, 1427
SfcI	CTRYAG	4 cut(s)	114, 978, 1059, 1176
SinI	GGWCC	2 cut(s)	513, 1520
SmaI	CCCGGG	1 cut(s)	911
SmiMI	CAYNNNNRTG	3 cut(s)	1194, 1338, 1581
SmlI	CTYRAG	2 cut(s)	50, 542
SmoI	CTYRAG	2 cut(s)	50, 542
SseBI	AGGCCT	1 cut(s)	1481
SsiI	CCGC	7 cut(s)	266, 596, 1004, 1274, 1278, 1439, 1565
SspMI	CTAG	2 cut(s)	1263, 1298
StuI	AGGCCT	1 cut(s)	1481
StyD4I	CCNGG	4 cut(s)	747, 908, 909, 1588
StyI	CCWWGG	4 cut(s)	509, 882, 963, 1355
TaaI	ACNGT	4 cut(s)	67, 532, 694, 922
TaiI	ACGT	2 cut(s)	495, 897
TaqI	TCGA	2 cut(s)	358, 534
TatI	WGTACW	2 cut(s)	580, 984
TauI	GCSGC	2 cut(s)	598, 1568
TfiI	GAWTC	2 cut(s)	395, 430
Tru1I	TTAA	2 cut(s)	372, 954
Tru9I	TTAA	2 cut(s)	372, 954
TscAI	CASTG	2 cut(s)	1047, 1377
TseI	GCWGC	9 cut(s)	605, 772, 856, 1259, 1433, 1457, 1492, 1501, 1531
TspDTI	ATGAA	7 cut(s)	284, 317, 345, 356, 602, 1391, 1474
TspGWI	ACGGA	2 cut(s)	46, 464
TspMI	CCCGGG	1 cut(s)	909
TspRI	CASTG	2 cut(s)	1047, 1377
Van91I	CCANNNNNTGG	1 cut(s)	1376
VpaK11BI	GGWCC	2 cut(s)	513, 1520
VspI	ATTAAT	1 cut(s)	954
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 970
XmaI	CCCGGG	1 cut(s)	909
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	2 cut(s)	1263, 1298
Zsp2I	ATGCAT	2 cut(s)	412, 1420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.