Rh2AG030100

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004817
Physical Location & Seq
Forward (+)
2094917 .. 2100463
5547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG030100.1

Sequence Viewer

Length: 1281 bp
ATGGCAGGAGGGGGTGGCACGCAGAAGAGCATAAGAAAAGTACTTGGATCCCTCAAGGACACCACCACAGTTTCATTGGCGAAAGTCAATAGCGATTACAAGGAACTGGACATTGCGATAGTCAAGGCAACGAATCATGTTGAGCGTCCAGCCAAGGAAAAATACATCAGAGCTATATTCTCTGCTGTTTCTGCAACAAGACCTCGGGCTGATGTTGCATATTGCATCCATGGTCTTGCTAGGAGGTTAGCGAAGACACATAACTGGGCGGTTGCATTGAAAACTCTAATTGTTATTCATCGTGCTTTGAGGGAAGTGGACCCCACCTTTCATGAAGAACTCATGAATTATGGTAGAAGTAGAAACCATATGCTTAACTTGTCTCATTTCAAAGACGATTCCAGTCCAAATGCATGGGATTATTCAACCTGGATCCGTACCTATGCCTTGTTTTTGGAGGAGAGATTGGAGTGTTTTCGTGTGTTGAAATATGATGTTGAGATGGATCGCCCAAGGACCAAGGATTTGGACACTGCTGAATTGCTTGAGCATTTGCCTGCTCTGCAACAGCTTCTTTTTCGTGTTCTTGGTTGCCAGCCACAAGGGGCAGCAGTTCATAATTTTGTGGTCCAATTAGCACTTTCGATGGTTGCTTCAGAGAGCATCAAGATTTATCAAGCTATTAGTGACGGAACAGTCAATTTGGTTGACAAGTTCTTTGAGATGCAACGCCATGATGCTATGAAGGCTCTGGATATATATCGGAGGGCAGGACAGCAGGCAGAGAGACTGTCAGAGTTCTATGAAGTATGTAAGAGTCTTGATATTGGGCGAGGAGAAAAGTTTATTAAGATTGAGCAGCCCCCTGCATCATTTTTACAAGCCATGGAAGAGTACGTCAGAGAAGCTCCCCGTGTCTCAATAGTTCGCAAGGAGGTGATTGACAATAAAATTTCTGCCCCCAAGGAAATCTTGGCCATAGAGGACAAAAAGACCCAAGAGGATGAAGCACGTCCACCTTCCCCACCTCCACCTGAACCAGTAAAAGTGGTAGCACCTGTAGTTGAACCACCTGATTTGCTGGGTTTGAATGATCCTGTTCCAGATACTGCAGCATTAGATGAGAAGAATGCCATGGCTTTAGCTATTGTTCCAGTTTCTGATCAACCTGCGGCTCAACCTCAAGCAAATGGAACAGGTTGGGAATTGGCACTTGTTACAGCCCCAAGCTCAAATGAGAGTGCTACAGCTGCTAGCAAACTGGTATACTTCCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

426

Amino Acids

47.55

Weight (kDa)

6.25

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 35 - 301 2.4e-87 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 695
Acc36I ACCTGC 1 cut(s) 1177
AccI GTMKAC 1 cut(s) 1266
AciI CCGC 2 cut(s) 269, 1172
AclWI GGATC 6 cut(s) 42, 55, 427, 440, 513, 1088
AcoI YGGCCR 1 cut(s) 975
AcsI RAATTY 1 cut(s) 951
AcuI CTGAAG 1 cut(s) 639
AfaI GTAC 3 cut(s) 42, 439, 896
AgsI TTSAA 6 cut(s) 280, 391, 426, 487, 1067, 1090
AjiI CACGTC 1 cut(s) 1013
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 7 cut(s) 173, 571, 680, 908, 1145, 1230, 1250
AluI AGCT 7 cut(s) 173, 571, 680, 908, 1145, 1230, 1250
Alw26I GTCTC 3 cut(s) 387, 781, 922
AlwI GGATC 6 cut(s) 42, 55, 427, 440, 513, 1088
AlwNI CAGNNNCTG 2 cut(s) 1109, 1160
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 1 cut(s) 975
ApeKI GCWGC 4 cut(s) 608, 859, 1112, 1250
ApoI RAATTY 1 cut(s) 951
ArsI GACNNNNNNTTYG 4 cut(s) 508, 540, 701, 733
AspS9I GGNCC 3 cut(s) 319, 516, 628
AsuHPI GGTGA 1 cut(s) 949
AsuNHI GCTAGC 1 cut(s) 1253
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 3 cut(s) 319, 516, 628
BalI TGGCCA 1 cut(s) 977
BamHI GGATCC 2 cut(s) 47, 432
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 4 cut(s) 620, 871, 1124, 1237
BccI CCATC 2 cut(s) 496, 640
BciT130I CCWGG 1 cut(s) 430
BclI TGATCA 1 cut(s) 1162
BcoDI GTCTC 3 cut(s) 387, 781, 922
BfaI CTAG 2 cut(s) 240, 1254
BfmI CTRYAG 3 cut(s) 1059, 1110, 1245
BfuAI ACCTGC 1 cut(s) 1177
BisI GCNGC 5 cut(s) 609, 860, 1113, 1173, 1251
BlsI GCNGC 5 cut(s) 610, 861, 1114, 1174, 1252
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 430
Bme18I GGWCC 3 cut(s) 319, 516, 628
BmeT110I CYCGRG 1 cut(s) 204
BmgBI CACGTC 1 cut(s) 1013
BmgT120I GGNCC 3 cut(s) 319, 516, 628
BmiI GGNNCC 3 cut(s) 49, 321, 434
BmrFI CCNGG 1 cut(s) 430
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 5 cut(s) 234, 672, 714, 727, 878
BmtI GCTAGC 1 cut(s) 1257
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 260
BpuEI CTTGAG 3 cut(s) 38, 566, 1167
BsaBI GATNNNNATC 1 cut(s) 759
BsaJI CCNNGG 8 cut(s) 153, 203, 229, 512, 519, 885, 963, 1134
Bse1I ACTGG 6 cut(s) 111, 269, 402, 1040, 1154, 1266
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 8 cut(s) 153, 203, 229, 512, 519, 885, 963, 1134
BseGI GGATG 2 cut(s) 225, 1009
BseJI GATNNNNATC 1 cut(s) 759
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 6 cut(s) 111, 269, 402, 1040, 1154, 1266
BseRI GAGGAG 2 cut(s) 473, 849
BseXI GCAGC 4 cut(s) 620, 871, 1124, 1237
BseYI CCCAGC 1 cut(s) 1081
BshFI GGCC 1 cut(s) 977
BsiHKCI CYCGRG 1 cut(s) 204
BsmAI GTCTC 3 cut(s) 387, 781, 922
BsmI GAATGC 1 cut(s) 1135
BsnI GGCC 1 cut(s) 977
BsoBI CYCGRG 1 cut(s) 204
Bsp143I GATC 5 cut(s) 47, 432, 505, 1093, 1162
Bsp19I CCATGG 3 cut(s) 229, 885, 1134
BspACI CCGC 2 cut(s) 269, 1172
BspANI GGCC 1 cut(s) 977
BspHI TCATGA 2 cut(s) 331, 342
BspLI GGNNCC 3 cut(s) 49, 321, 434
BspMAI CTGCAG 1 cut(s) 1114
BspMI ACCTGC 1 cut(s) 1177
BspOI GCTAGC 1 cut(s) 1257
BspPI GGATC 6 cut(s) 42, 55, 427, 440, 513, 1088
BspQI GCTCTTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 6 cut(s) 111, 269, 402, 1040, 1154, 1266
BssECI CCNNGG 8 cut(s) 153, 203, 229, 512, 519, 885, 963, 1134
BssMI GATC 5 cut(s) 47, 432, 505, 1093, 1162
BssNAI GTATAC 1 cut(s) 1267
BssT1I CCWWGG 7 cut(s) 153, 229, 512, 519, 885, 963, 1134
Bst1107I GTATAC 1 cut(s) 1267
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 3 cut(s) 70, 697, 792
Bst6I CTCTTC 2 cut(s) 20, 885
BstC8I GCNNGC 5 cut(s) 20, 558, 596, 780, 1255
BstDSI CCRYGG 3 cut(s) 229, 885, 1134
BstF5I GGATG 2 cut(s) 225, 1009
BstKTI GATC 5 cut(s) 50, 435, 508, 1096, 1165
BstMAI GTCTC 3 cut(s) 387, 781, 922
BstMBI GATC 5 cut(s) 47, 432, 505, 1093, 1162
BstMWI GCNNNNNNNGC 5 cut(s) 191, 215, 562, 746, 1250
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 428
BstSFI CTRYAG 3 cut(s) 1059, 1110, 1245
BstV1I GCAGC 4 cut(s) 620, 871, 1124, 1237
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 47, 432
BstXI CCANNNNNNTGG 2 cut(s) 414, 526
BstYI RGATCY 2 cut(s) 47, 432
BstZ17I GTATAC 1 cut(s) 1267
BsuRI GGCC 1 cut(s) 977
BtgI CCRYGG 3 cut(s) 229, 885, 1134
BtrI CACGTC 1 cut(s) 1013
BtsCI GGATG 2 cut(s) 225, 1009
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 1 cut(s) 1177
Cac8I GCNNGC 5 cut(s) 20, 558, 596, 780, 1255
CaiI CAGNNNCTG 2 cut(s) 1109, 1160
CciI TCATGA 2 cut(s) 331, 342
Cfr13I GGNCC 3 cut(s) 319, 516, 628
CseI GACGC 1 cut(s) 134
Csp6I GTAC 3 cut(s) 41, 438, 895
CspCI CAANNNNNGTGG 2 cut(s) 1059, 1094
CviAII CATG 8 cut(s) 137, 230, 332, 343, 414, 734, 886, 1135
CviQI GTAC 3 cut(s) 41, 438, 895
DpnI GATC 5 cut(s) 49, 434, 507, 1095, 1164
DpnII GATC 5 cut(s) 47, 432, 505, 1093, 1162
DrdI GACNNNNNNGTC 1 cut(s) 695
DseDI GACNNNNNNGTC 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 975
Eam1104I CTCTTC 2 cut(s) 20, 885
EarI CTCTTC 2 cut(s) 20, 885
Eco130I CCWWGG 7 cut(s) 153, 229, 512, 519, 885, 963, 1134
Eco47I GGWCC 3 cut(s) 319, 516, 628
Eco57I CTGAAG 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 428
EcoT14I CCWWGG 7 cut(s) 153, 229, 512, 519, 885, 963, 1134
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 7 cut(s) 153, 229, 512, 519, 885, 963, 1134
FaeI CATG 8 cut(s) 140, 233, 335, 346, 417, 737, 889, 1138
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FatI CATG 8 cut(s) 136, 229, 331, 342, 413, 733, 885, 1134
FauNDI CATATG 1 cut(s) 369
FbaI TGATCA 1 cut(s) 1162
FblI GTMKAC 1 cut(s) 1266
Fnu4HI GCNGC 5 cut(s) 609, 860, 1113, 1173, 1251
FokI GGATG 2 cut(s) 212, 1016
Fsp4HI GCNGC 5 cut(s) 609, 860, 1113, 1173, 1251
FspBI CTAG 2 cut(s) 240, 1254
GluI GCNGC 5 cut(s) 609, 860, 1113, 1173, 1251
GsaI CCCAGC 1 cut(s) 1085
HaeIII GGCC 1 cut(s) 977
HgaI GACGC 1 cut(s) 134
Hin1II CATG 8 cut(s) 140, 233, 335, 346, 417, 737, 889, 1138
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 3 cut(s) 133, 398, 817
HphI GGTGA 1 cut(s) 949
Hpy166II GTNNAC 4 cut(s) 319, 709, 1016, 1267
Hpy188I TCNGA 6 cut(s) 170, 658, 765, 796, 902, 1162
Hpy188III TCNNGA 6 cut(s) 332, 343, 667, 752, 821, 1103
Hpy8I GTNNAC 4 cut(s) 319, 709, 1016, 1267
HpyAV CCTTC 2 cut(s) 739, 1029
HpyCH4III ACNGT 3 cut(s) 70, 697, 792
HpyCH4IV ACGT 2 cut(s) 897, 1012
HpyCH4V TGCA 9 cut(s) 194, 218, 225, 275, 413, 565, 727, 869, 1112
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 215, 562, 746, 1250
HpySE526I ACGT 2 cut(s) 897, 1012
Hsp92II CATG 8 cut(s) 140, 233, 335, 346, 417, 737, 889, 1138
Ksp22I TGATCA 1 cut(s) 1162
Kzo9I GATC 5 cut(s) 47, 432, 505, 1093, 1162
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 913
Lsp1109I GCAGC 4 cut(s) 620, 871, 1124, 1237
LweI GCATC 5 cut(s) 234, 672, 714, 727, 878
MaeI CTAG 2 cut(s) 240, 1254
MaeII ACGT 2 cut(s) 897, 1012
MaeIII GTNAC 2 cut(s) 686, 1216
MalI GATC 5 cut(s) 49, 434, 507, 1095, 1164
MboI GATC 5 cut(s) 47, 432, 505, 1093, 1162
MboII GAAGA 5 cut(s) 37, 265, 347, 902, 1138
MflI RGATCY 2 cut(s) 47, 432
MlsI TGGCCA 1 cut(s) 977
MluCI AATT 8 cut(s) 288, 346, 539, 619, 632, 700, 951, 1205
MluNI TGGCCA 1 cut(s) 977
MlyI GAGTC 1 cut(s) 826
Mox20I TGGCCA 1 cut(s) 977
Mph1103I ATGCAT 1 cut(s) 415
MscI TGGCCA 1 cut(s) 977
MseI TTAA 2 cut(s) 375, 849
Msp20I TGGCCA 1 cut(s) 977
MspA1I CMGCKG 1 cut(s) 1250
MspR9I CCNGG 1 cut(s) 430
Mva1269I GAATGC 1 cut(s) 1135
MvaI CCWGG 1 cut(s) 430
MwoI GCNNNNNNNGC 5 cut(s) 191, 215, 562, 746, 1250
NcoI CCATGG 3 cut(s) 229, 885, 1134
NdeI CATATG 1 cut(s) 369
NdeII GATC 5 cut(s) 47, 432, 505, 1093, 1162
NheI GCTAGC 1 cut(s) 1253
NlaIII CATG 8 cut(s) 140, 233, 335, 346, 417, 737, 889, 1138
NlaIV GGNNCC 3 cut(s) 49, 321, 434
NmuCI GTSAC 1 cut(s) 686
NsiI ATGCAT 1 cut(s) 415
PagI TCATGA 2 cut(s) 331, 342
PciSI GCTCTTC 1 cut(s) 20
PctI GAATGC 1 cut(s) 1135
PfeI GAWTC 2 cut(s) 133, 398
PkrI GCNGC 5 cut(s) 610, 861, 1114, 1174, 1252
PleI GAGTC 1 cut(s) 825
PpsI GAGTC 1 cut(s) 825
Psp6I CCWGG 1 cut(s) 428
PspFI CCCAGC 1 cut(s) 1081
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 3 cut(s) 49, 321, 434
PspPI GGNCC 3 cut(s) 319, 516, 628
PstI CTGCAG 1 cut(s) 1114
PstNI CAGNNNCTG 2 cut(s) 1109, 1160
PsuI RGATCY 2 cut(s) 47, 432
PvuII CAGCTG 1 cut(s) 1250
RsaI GTAC 3 cut(s) 42, 439, 896
RsaNI GTAC 3 cut(s) 41, 438, 895
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 375, 849
SatI GCNGC 5 cut(s) 609, 860, 1113, 1173, 1251
Sau3AI GATC 5 cut(s) 47, 432, 505, 1093, 1162
Sau96I GGNCC 3 cut(s) 319, 516, 628
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 1 cut(s) 826
ScrFI CCNGG 1 cut(s) 430
SfaNI GCATC 5 cut(s) 234, 672, 714, 727, 878
SfcI CTRYAG 3 cut(s) 1059, 1110, 1245
SinI GGWCC 3 cut(s) 319, 516, 628
SmlI CTYRAG 3 cut(s) 53, 545, 1182
SmoI CTYRAG 3 cut(s) 53, 545, 1182
Sse9I AATT 8 cut(s) 288, 346, 539, 619, 632, 700, 951, 1205
SsiI CCGC 2 cut(s) 269, 1172
SspMI CTAG 2 cut(s) 240, 1254
StyD4I CCNGG 1 cut(s) 428
StyI CCWWGG 7 cut(s) 153, 229, 512, 519, 885, 963, 1134
TaaI ACNGT 3 cut(s) 70, 697, 792
TaiI ACGT 2 cut(s) 900, 1015
TaqI TCGA 1 cut(s) 644
TasI AATT 8 cut(s) 288, 346, 539, 619, 632, 700, 951, 1205
TatI WGTACW 1 cut(s) 40
TauI GCSGC 1 cut(s) 1175
TfiI GAWTC 2 cut(s) 133, 398
Tru1I TTAA 2 cut(s) 375, 849
Tru9I TTAA 2 cut(s) 375, 849
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 4 cut(s) 608, 859, 1112, 1250
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 9 cut(s) 63, 287, 320, 348, 359, 605, 758, 819, 1020
TspGWI ACGGA 2 cut(s) 425, 705
TspRI CASTG 1 cut(s) 538
VpaK11BI GGWCC 3 cut(s) 319, 516, 628
XapI RAATTY 1 cut(s) 951
XcmI CCANNNNNNNNNTGG 2 cut(s) 73, 970
XmiI GTMKAC 1 cut(s) 1266
XspI CTAG 2 cut(s) 240, 1254
ZrmI AGTACT 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.