Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7995458.1

Orthogroup ID

OG0004817

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 523

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7995458.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 346 bp

tggcacttgttacagccccaagctcaaatgagagtgctacagctgctagcaaactggcgggagggttggacttgcttacactagacagcctatacgatgatgcaattagaagaaacaatcaaaatgtaagctacaacccatgggagcaggctcccatgaatggtggcatgatgcaacaaccaattcatgatcccttttatgcatccaacacagtggccgcaccaccctctgtacagatggccgcaatggccaaccagcagcaacaggccttcatgtatcaacaacagcagatgatgatgatgggccaacaacaaccgcaatctttgaatccttttgggaatcctca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

114

Amino Acids

12.44

Weight (kDa)

4.32

Isoelectric Point (pI)

65.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35200 AT5G35200
fragaria_vesca	FvH4_1g02540 FvH4_1g02540 FvH4_1g02540
malus_domestica	MD02G1022900.v1.1 MD15G1165600.v1.1
prunus_persica	Prupe.7G249200_v2.0.a1 Prupe.7G249200_v2.0.a1
pyrus_communis	pycom15g14840
rosa_chinensis	RchiOBHm_Chr1g0354531 RchiOBHm_Chr2g0087571
rosa_laevigata	RLG00000015879
rosa_multiflora	Rmu_co7995458.1_g000001 Rmu_sc0002299.1_g000024 Rmu_sc0003071.1_g000007 Rmu_sc0006059.1_g000023
rosa_roxburghii	Rroxscaffold_2G00153460
rosa_rugosa	Rorug01G0476600 Rorug06G0009000
rosa_samantha	Rh2AG030100 Rh2AG444300 Rh2BG030000 Rh2CG030300 Rh2CG431200 Rh2DG030200 Rh2DG503600 Rh4AG121800
rosa_wichuraiana	Rw1G014010 Rw2G002390 Rw5G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	58, 218, 242, 316
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	3 cut(s)	215, 239, 248
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	327
AluBI	AGCT	3 cut(s)	23, 43, 131
AluI	AGCT	3 cut(s)	23, 43, 131
AlwI	GGATC	1 cut(s)	184
AoxI	GGCC	5 cut(s)	215, 239, 248, 266, 303
ApeKI	GCWGC	2 cut(s)	43, 258
AspS9I	GGNCC	1 cut(s)	303
AsuNHI	GCTAGC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	30, 270
BccI	CCATC	2 cut(s)	231, 294
BfaI	CTAG	2 cut(s)	47, 82
BfmI	CTRYAG	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	247
BisI	GCNGC	4 cut(s)	44, 218, 242, 259
BlsI	GCNGC	4 cut(s)	45, 219, 243, 260
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	152
BmsI	GCATC	3 cut(s)	90, 161, 211
BmtI	GCTAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	30, 270
BshFI	GGCC	5 cut(s)	217, 241, 250, 268, 305
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	5 cut(s)	217, 241, 250, 268, 305
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	4 cut(s)	58, 218, 242, 316
BspANI	GGCC	5 cut(s)	217, 241, 250, 268, 305
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	152
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	213
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	48, 149
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 247
BstSFI	CTRYAG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	30, 270
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuRI	GGCC	5 cut(s)	217, 241, 250, 268, 305
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	48, 149
CciI	TCATGA	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	5 cut(s)	140, 156, 168, 187, 273
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EaeI	YGGCCR	3 cut(s)	215, 239, 248
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	5 cut(s)	143, 159, 171, 190, 276
FaiI	YATR	7 cut(s)	93, 141, 157, 169, 188, 200, 274
FatI	CATG	5 cut(s)	139, 155, 167, 186, 272
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	44, 218, 242, 259
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	44, 218, 242, 259
FspBI	CTAG	2 cut(s)	47, 82
GluI	GCNGC	4 cut(s)	44, 218, 242, 259
HaeIII	GGCC	5 cut(s)	217, 241, 250, 268, 305
Hin1II	CATG	5 cut(s)	143, 159, 171, 190, 276
HinfI	GANTC	2 cut(s)	327, 339
Hpy188III	TCNNGA	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	103, 174, 202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 247
Hsp92II	CATG	5 cut(s)	143, 159, 171, 190, 276
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	144, 156
LpnPI	CCDG	4 cut(s)	40, 133, 250, 268
Lsp1109I	GCAGC	2 cut(s)	30, 270
LweI	GCATC	3 cut(s)	90, 161, 211
MaeI	CTAG	2 cut(s)	47, 82
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	122
MlsI	TGGCCA	1 cut(s)	250
MluCI	AATT	2 cut(s)	104, 182
MluNI	TGGCCA	1 cut(s)	250
MmeI	TCCRAC	2 cut(s)	47, 230
MnlI	CCTC	2 cut(s)	55, 237
Mox20I	TGGCCA	1 cut(s)	250
Mph1103I	ATGCAT	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	250
Msp20I	TGGCCA	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	43, 247
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	1 cut(s)	189
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	5 cut(s)	143, 159, 171, 190, 276
NlaIV	GGNNCC	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	204
PagI	TCATGA	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	327, 339
PkrI	GCNGC	4 cut(s)	45, 219, 243, 260
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SatI	GCNGC	4 cut(s)	44, 218, 242, 259
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	303
SetI	ASST	3 cut(s)	25, 45, 133
SfaNI	GCATC	3 cut(s)	90, 161, 211
SfcI	CTRYAG	1 cut(s)	38
SfiI	GGCCNNNNNGGCC	1 cut(s)	247
Sse9I	AATT	2 cut(s)	104, 182
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	4 cut(s)	58, 218, 242, 316
SspMI	CTAG	2 cut(s)	47, 82
StuI	AGGCCT	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	213
TasI	AATT	2 cut(s)	104, 182
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	2 cut(s)	220, 244
TfiI	GAWTC	2 cut(s)	327, 339
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	2 cut(s)	43, 258
TspDTI	ATGAA	3 cut(s)	172, 175, 261
TspRI	CASTG	1 cut(s)	218
XspI	CTAG	2 cut(s)	47, 82
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.