Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004817

Physical Location & Seq

Genomic Coordinates Forward (+)

65678073 .. 65679566

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG444300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAAGAGTACATCAGAGAAGCTCCCCGTGTCTCAATAGTTCGCAAGGAGGTGATTGACAATAAAATTTCTGCCCCCAAGGAAATCTTGGCCATAGAGGACAAAAAGACCCAAGACGATGAGGCACGTCCACCTTCCCCACCTCCACCTGAACCAGTAAAAGTGGTAGCACCTGTAGTTGAACCACTTGATTTGCTGGGTTTGAATGATCCTGTTCCAGATACTGCAGCATTAGATGAGAAGAATGCCATGGCTTTAGCTATTGTTCCAGTTTCTGATCAACCTGCGGCTCAACCTCAAGCAAATGGAACAGGTTGGGAATTGGCACTTGTTACAGCCCCAAGCTCAAATGAGAGTGCTACAGCTGCTAGCAAACTGGTATACTTCCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

131

Amino Acids

14.03

Weight (kDa)

4.42

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35200 AT5G35200
fragaria_vesca	FvH4_1g02540 FvH4_1g02540 FvH4_1g02540
malus_domestica	MD02G1022900.v1.1 MD15G1165600.v1.1
prunus_persica	Prupe.7G249200_v2.0.a1 Prupe.7G249200_v2.0.a1
pyrus_communis	pycom15g14840
rosa_chinensis	RchiOBHm_Chr1g0354531 RchiOBHm_Chr2g0087571
rosa_laevigata	RLG00000015879
rosa_multiflora	Rmu_co7995458.1_g000001 Rmu_sc0002299.1_g000024 Rmu_sc0003071.1_g000007 Rmu_sc0006059.1_g000023
rosa_roxburghii	Rroxscaffold_2G00153460
rosa_rugosa	Rorug01G0476600 Rorug06G0009000
rosa_samantha	Rh2AG030100 Rh2AG444300 Rh2BG030000 Rh2CG030300 Rh2CG431200 Rh2DG030200 Rh2DG503600 Rh4AG121800
rosa_wichuraiana	Rw1G014010 Rw2G002390 Rw5G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	66
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	182, 205
AjiI	CACGTC	1 cut(s)	128
AluBI	AGCT	4 cut(s)	23, 260, 345, 365
AluI	AGCT	4 cut(s)	23, 260, 345, 365
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	2 cut(s)	224, 275
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	227, 365
ApoI	RAATTY	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	64
AsuNHI	GCTAGC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	239, 352
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	3 cut(s)	174, 225, 360
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	228, 288, 366
BlsI	GCNGC	3 cut(s)	229, 289, 367
BmgBI	CACGTC	1 cut(s)	128
BmtI	GCTAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	78, 249
Bse1I	ACTGG	3 cut(s)	155, 269, 381
BseDI	CCNNGG	2 cut(s)	78, 249
BseNI	ACTGG	3 cut(s)	155, 269, 381
BseXI	GCAGC	2 cut(s)	239, 352
BseYI	CCCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	208, 277
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	92
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	155, 269, 381
BssECI	CCNNGG	2 cut(s)	78, 249
BssMI	GATC	2 cut(s)	208, 277
BssNAI	GTATAC	1 cut(s)	382
BssT1I	CCWWGG	2 cut(s)	78, 249
Bst1107I	GTATAC	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	249
BstKTI	GATC	2 cut(s)	211, 280
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	208, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstSFI	CTRYAG	3 cut(s)	174, 225, 360
BstV1I	GCAGC	2 cut(s)	239, 352
BstZ17I	GTATAC	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	128
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	370
CaiI	CAGNNNCTG	2 cut(s)	224, 275
Csp6I	GTAC	1 cut(s)	10
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	8 cut(s)	23, 92, 254, 260, 290, 338, 345, 365
CviKI_1	RGCY	8 cut(s)	23, 92, 254, 260, 290, 338, 345, 365
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	2 cut(s)	210, 279
DpnII	GATC	2 cut(s)	208, 277
EaeI	YGGCCR	1 cut(s)	90
Eco130I	CCWWGG	2 cut(s)	78, 249
EcoT14I	CCWWGG	2 cut(s)	78, 249
ErhI	CCWWGG	2 cut(s)	78, 249
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	95, 251, 382
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FatI	CATG	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	3 cut(s)	228, 288, 366
Fsp4HI	GCNGC	3 cut(s)	228, 288, 366
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	3 cut(s)	228, 288, 366
GsaI	CCCAGC	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	131, 382
Hpy188I	TCNGA	2 cut(s)	17, 277
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	131, 382
HpyAV	CCTTC	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	208, 277
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	2 cut(s)	239, 352
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	210, 279
MboI	GATC	2 cut(s)	208, 277
MboII	GAAGA	2 cut(s)	17, 253
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	66, 320
MluNI	TGGCCA	1 cut(s)	92
MnlI	CCTC	5 cut(s)	43, 91, 115, 153, 306
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	2 cut(s)	208, 277
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	253
PctI	GAATGC	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	229, 289, 367
PspFI	CCCAGC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	2 cut(s)	224, 275
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	3 cut(s)	228, 288, 366
Sau3AI	GATC	2 cut(s)	208, 277
SfcI	CTRYAG	3 cut(s)	174, 225, 360
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	66, 320
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	78, 249
TaiI	ACGT	1 cut(s)	130
TasI	AATT	2 cut(s)	66, 320
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	227, 365
XapI	RAATTY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.