Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006059.1

Orthogroup ID

OG0004817

Physical Location & Seq

Genomic Coordinates Forward (+)

96167 .. 100205

Gene Structure 4039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006059.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggaagagtatgtcagagaagctccccgtgtctcaatagttcgcaaggaggtgattgacaataaaatttctgcccccaaggaaatcttggccatagaggacaaaaagacccaagacgatgaggcacgtccaccttccccacctccacctaaaccagtaaaagtggtggcacctgtagttgaaccacttgatttgctgggtttgaatgatcctgttcccgatactgtagcattagatgagaagaatgccatggctttagctattgttccagtttctgatcaacctgcggctcaacctcaagcaaatggaacaggttgggaattggcacttgttacagccccaagctcaaatgagagtgccacagctactagcaaactggtccaatttggatcaggtggattcctggcatggtggagtgcatactatggtgcgctggcggtggagcaaccatctggggcaacatggttggtggagcactggaggtggtggctcaacgcaagaagtggtgcaacgacgacagtgaacagtcggtggggactatggttgaattgggttgggccttacatgactgtgatatccttgctattgcttgggtttggactcacttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

203

Amino Acids

22.12

Weight (kDa)

4.84

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35200 AT5G35200
fragaria_vesca	FvH4_1g02540 FvH4_1g02540 FvH4_1g02540
malus_domestica	MD02G1022900.v1.1 MD15G1165600.v1.1
prunus_persica	Prupe.7G249200_v2.0.a1 Prupe.7G249200_v2.0.a1
pyrus_communis	pycom15g14840
rosa_chinensis	RchiOBHm_Chr1g0354531 RchiOBHm_Chr2g0087571
rosa_laevigata	RLG00000015879
rosa_multiflora	Rmu_co7995458.1_g000001 Rmu_sc0002299.1_g000024 Rmu_sc0003071.1_g000007 Rmu_sc0006059.1_g000023
rosa_roxburghii	Rroxscaffold_2G00153460
rosa_rugosa	Rorug01G0476600 Rorug06G0009000
rosa_samantha	Rh2AG030100 Rh2AG444300 Rh2BG030000 Rh2CG030300 Rh2CG431200 Rh2DG030200 Rh2DG503600 Rh4AG121800
rosa_wichuraiana	Rw1G014010 Rw2G002390 Rw5G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	169
AciI	CCGC	2 cut(s)	287, 437
AclWI	GGATC	2 cut(s)	203, 397
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	66
AgsI	TTSAA	3 cut(s)	182, 205, 547
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	4 cut(s)	23, 260, 345, 365
AluI	AGCT	4 cut(s)	23, 260, 345, 365
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	203, 397
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	90, 557
ApoI	RAATTY	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	379, 557
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	477
BccI	CCATC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	404
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	369, 610
BfmI	CTRYAG	2 cut(s)	174, 225
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	1 cut(s)	379
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	379, 557
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	78, 249
Bse1I	ACTGG	4 cut(s)	155, 269, 381, 482
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	78, 249
BseNI	ACTGG	4 cut(s)	155, 269, 381, 482
BseYI	CCCAGC	1 cut(s)	196
BshFI	GGCC	2 cut(s)	92, 559
BshNI	GGYRCC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	92, 559
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	208, 277, 389
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	2 cut(s)	287, 437
BspANI	GGCC	2 cut(s)	92, 559
BspLI	GGNNCC	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	203, 397
BspT107I	GGYRCC	1 cut(s)	169
BsrI	ACTGG	4 cut(s)	155, 269, 381, 482
BssECI	CCNNGG	2 cut(s)	78, 249
BssMI	GATC	3 cut(s)	208, 277, 389
BssT1I	CCWWGG	2 cut(s)	78, 249
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	4 cut(s)	226, 520, 527, 571
BstC8I	GCNNGC	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	3 cut(s)	211, 280, 392
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	208, 277, 389
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	2 cut(s)	174, 225
BsuRI	GGCC	2 cut(s)	92, 559
BtgI	CCRYGG	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	475, 525
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	379, 557
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	4 cut(s)	250, 408, 462, 565
DpnI	GATC	3 cut(s)	210, 279, 391
DpnII	GATC	3 cut(s)	208, 277, 389
EaeI	YGGCCR	1 cut(s)	90
Eco130I	CCWWGG	2 cut(s)	78, 249
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	2 cut(s)	78, 249
ErhI	CCWWGG	2 cut(s)	78, 249
FaeI	CATG	4 cut(s)	253, 411, 465, 568
FaiI	YATR	9 cut(s)	12, 95, 251, 409, 421, 426, 463, 541, 566
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	4 cut(s)	249, 407, 461, 564
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	369, 610
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	1 cut(s)	288
GsaI	CCCAGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	92, 559
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	4 cut(s)	253, 411, 465, 568
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HinfI	GANTC	2 cut(s)	399, 600
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	131, 523
Hpy188I	TCNGA	2 cut(s)	17, 277
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	131, 523
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	4 cut(s)	226, 520, 527, 571
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	419, 509
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	253, 411, 465, 568
HspAI	GCGC	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	208, 277, 389
LmnI	GCTCC	3 cut(s)	28, 442, 472
MaeI	CTAG	2 cut(s)	369, 610
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	3 cut(s)	210, 279, 391
MboI	GATC	3 cut(s)	208, 277, 389
MboII	GAAGA	2 cut(s)	17, 253
MhlI	GDGCHC	1 cut(s)	477
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	4 cut(s)	66, 320, 383, 547
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	594
MnlI	CCTC	6 cut(s)	43, 91, 115, 153, 306, 474
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	569
Msp20I	TGGCCA	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	3 cut(s)	208, 277, 389
NlaIII	CATG	4 cut(s)	253, 411, 465, 568
NlaIV	GGNNCC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	402
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	379, 557
PstNI	CAGNNNCTG	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	569
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	3 cut(s)	208, 277, 389
Sau96I	GGNCC	2 cut(s)	379, 557
SchI	GAGTC	1 cut(s)	594
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	477
SfcI	CTRYAG	2 cut(s)	174, 225
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	4 cut(s)	66, 320, 383, 547
SsiI	CCGC	2 cut(s)	287, 437
SspMI	CTAG	2 cut(s)	369, 610
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	2 cut(s)	78, 249
TaaI	ACNGT	4 cut(s)	226, 520, 527, 571
TaiI	ACGT	1 cut(s)	130
TasI	AATT	4 cut(s)	66, 320, 383, 547
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	399
TscAI	CASTG	2 cut(s)	482, 525
TspRI	CASTG	2 cut(s)	482, 525
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	2 cut(s)	369, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.