Clathrin assembly protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G35200 AT5G35200 |
| fragaria_vesca | FvH4_1g02540 FvH4_1g02540 FvH4_1g02540 |
| malus_domestica | MD02G1022900.v1.1 MD15G1165600.v1.1 |
| prunus_persica | Prupe.7G249200_v2.0.a1 Prupe.7G249200_v2.0.a1 |
| pyrus_communis | pycom15g14840 |
| rosa_chinensis | RchiOBHm_Chr1g0354531 RchiOBHm_Chr2g0087571 |
| rosa_laevigata | RLG00000015879 |
| rosa_multiflora | Rmu_co7995458.1_g000001 Rmu_sc0002299.1_g000024 Rmu_sc0003071.1_g000007 Rmu_sc0006059.1_g000023 |
| rosa_roxburghii | Rroxscaffold_2G00153460 |
| rosa_rugosa | Rorug01G0476600 Rorug06G0009000 |
| rosa_samantha | Rh2AG030100 Rh2AG444300 Rh2BG030000 Rh2CG030300 Rh2CG431200 Rh2DG030200 Rh2DG503600 Rh4AG121800 |
| rosa_wichuraiana | Rw1G014010 Rw2G002390 Rw5G022520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 181 |
| AciI | CCGC | 1 cut(s) | 44 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 127 |
| AfaI | GTAC | 1 cut(s) | 13 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 105 |
| AgsI | TTSAA | 2 cut(s) | 125, 212 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 204 |
| AluBI | AGCT | 1 cut(s) | 53 |
| AluI | AGCT | 1 cut(s) | 53 |
| Ama87I | CYCGRG | 1 cut(s) | 99 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApoI | RAATTY | 1 cut(s) | 127 |
| AsuHPI | GGTGA | 1 cut(s) | 166 |
| AvaI | CYCGRG | 1 cut(s) | 99 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 181 |
| BccI | CCATC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 45 |
| BlsI | GCNGC | 1 cut(s) | 46 |
| BmcAI | AGTACT | 1 cut(s) | 13 |
| BmeT110I | CYCGRG | 1 cut(s) | 99 |
| BmiI | GGNNCC | 1 cut(s) | 183 |
| BmsI | GCATC | 2 cut(s) | 125, 159 |
| BpmI | CTGGAG | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 3 cut(s) | 100, 144, 216 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 105 |
| BseDI | CCNNGG | 3 cut(s) | 100, 144, 216 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 105 |
| BseYI | CCCAGC | 1 cut(s) | 53 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BshNI | GGYRCC | 1 cut(s) | 181 |
| BsiHKCI | CYCGRG | 1 cut(s) | 99 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 105 |
| BsnI | GGCC | 1 cut(s) | 5 |
| BsoBI | CYCGRG | 1 cut(s) | 99 |
| BspACI | CCGC | 1 cut(s) | 44 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspHI | TCATGA | 1 cut(s) | 132 |
| BspLI | GGNNCC | 1 cut(s) | 183 |
| BspT107I | GGYRCC | 1 cut(s) | 181 |
| BssECI | CCNNGG | 3 cut(s) | 100, 144, 216 |
| BssT1I | CCWWGG | 2 cut(s) | 144, 216 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 50 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtsI | GCAGTG | 1 cut(s) | 26 |
| BtsIMutI | CAGTG | 1 cut(s) | 26 |
| CciI | TCATGA | 1 cut(s) | 132 |
| Csp6I | GTAC | 1 cut(s) | 12 |
| CviAII | CATG | 2 cut(s) | 7, 133 |
| CviJI | RGCY | 4 cut(s) | 5, 47, 53, 143 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 47, 53, 143 |
| CviQI | GTAC | 1 cut(s) | 12 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 2 cut(s) | 144, 216 |
| Eco88I | CYCGRG | 1 cut(s) | 99 |
| EcoT14I | CCWWGG | 2 cut(s) | 144, 216 |
| ErhI | CCWWGG | 2 cut(s) | 144, 216 |
| FaeI | CATG | 2 cut(s) | 10, 136 |
| FaiI | YATR | 3 cut(s) | 8, 23, 134 |
| FatI | CATG | 2 cut(s) | 6, 132 |
| Fnu4HI | GCNGC | 1 cut(s) | 45 |
| Fsp4HI | GCNGC | 1 cut(s) | 45 |
| GluI | GCNGC | 1 cut(s) | 45 |
| GsaI | CCCAGC | 1 cut(s) | 57 |
| GsuI | CTGGAG | 1 cut(s) | 69 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| Hin1II | CATG | 2 cut(s) | 10, 136 |
| HinfI | GANTC | 2 cut(s) | 109, 203 |
| HphI | GGTGA | 1 cut(s) | 166 |
| Hpy188III | TCNNGA | 1 cut(s) | 133 |
| Hpy99I | CGWCG | 1 cut(s) | 41 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 50 |
| Hsp92II | CATG | 2 cut(s) | 10, 136 |
| LmnI | GCTCC | 1 cut(s) | 50 |
| LpnPI | CCDG | 2 cut(s) | 33, 39 |
| LweI | GCATC | 2 cut(s) | 125, 159 |
| MaeIII | GTNAC | 1 cut(s) | 24 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 127, 188 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MmeI | TCCRAC | 1 cut(s) | 180 |
| MnlI | CCTC | 3 cut(s) | 95, 145, 195 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 1 cut(s) | 167 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 50 |
| NlaIII | CATG | 2 cut(s) | 10, 136 |
| NlaIV | GGNNCC | 1 cut(s) | 183 |
| NmuCI | GTSAC | 1 cut(s) | 24 |
| PagI | TCATGA | 1 cut(s) | 132 |
| PfeI | GAWTC | 1 cut(s) | 109 |
| PkrI | GCNGC | 1 cut(s) | 46 |
| PleI | GAGTC | 1 cut(s) | 197 |
| PpsI | GAGTC | 1 cut(s) | 197 |
| PspFI | CCCAGC | 1 cut(s) | 53 |
| PspN4I | GGNNCC | 1 cut(s) | 183 |
| RsaI | GTAC | 1 cut(s) | 13 |
| RsaNI | GTAC | 1 cut(s) | 12 |
| RseI | CAYNNNNRTG | 1 cut(s) | 167 |
| SatI | GCNGC | 1 cut(s) | 45 |
| ScaI | AGTACT | 1 cut(s) | 13 |
| SchI | GAGTC | 1 cut(s) | 197 |
| SetI | ASST | 6 cut(s) | 55, 106, 150, 156, 187, 218 |
| SfaNI | GCATC | 2 cut(s) | 125, 159 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 167 |
| Sse9I | AATT | 2 cut(s) | 127, 188 |
| SsiI | CCGC | 1 cut(s) | 44 |
| StyI | CCWWGG | 2 cut(s) | 144, 216 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaqI | TCGA | 1 cut(s) | 112 |
| TasI | AATT | 2 cut(s) | 127, 188 |
| TatI | WGTACW | 1 cut(s) | 11 |
| TauI | GCSGC | 1 cut(s) | 47 |
| TfiI | GAWTC | 1 cut(s) | 109 |
| TscAI | CASTG | 1 cut(s) | 33 |
| TseFI | GTSAC | 1 cut(s) | 24 |
| Tsp45I | GTSAC | 1 cut(s) | 24 |
| TspDTI | ATGAA | 1 cut(s) | 121 |
| TspRI | CASTG | 1 cut(s) | 33 |
| XapI | RAATTY | 1 cut(s) | 127 |
| ZrmI | AGTACT | 1 cut(s) | 13 |