Rw5G022520

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004817
Physical Location & Seq
Reverse (-)
31227552 .. 31229466
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022520.1

Sequence Viewer

Length: 420 bp
ATGAATTTTAAGGTGGAAATCTTGGCCATAGAGGACAAAAAGACCCAAGACGATGAGGCACGTCCACCTTCCCCACCTCCACCTAAACCAGTAAAAGTGGTAGCACCTGTAGTTGAACCACTTGATTTGCTGGGTTTGAATGATCCTGTTCCAGATACTGCAGCATTAGATGAGAAGAATGCCATGGCTTTAGCTATTGTTCCAGTGGCCAACATAATCCTTATAGATGCACCAGTTGGTGCTGGGTTTTCATACTCTACAACCTCGGAAGGGTACTATACTTCCGATACAAAATCAGCTGCACAGACCTATACTTTCTTAAGAAAGGGAAGGAGAAAAGAATCACAATGGTTATATGCACACCCAAGGTTTCAGGGAAATCAACTGTACATTGGTGGTGACTCATATTCAGGACTTATT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

140

Amino Acids

15.25

Weight (kDa)

5.1

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 69 - 139 5.3e-17 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 137
AcoI YGGCCR 2 cut(s) 24, 207
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 2 cut(s) 275, 389
AfiI CCNNNNNNNGG 1 cut(s) 270
AflII CTTAAG 1 cut(s) 319
AgsI TTSAA 2 cut(s) 116, 139
AjiI CACGTC 1 cut(s) 62
AluBI AGCT 2 cut(s) 194, 299
AluI AGCT 2 cut(s) 194, 299
AlwI GGATC 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 2 cut(s) 24, 207
ApeKI GCWGC 2 cut(s) 161, 299
ApoI RAATTY 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 410
BalI TGGCCA 2 cut(s) 26, 209
BbvI GCAGC 2 cut(s) 173, 286
BfmI CTRYAG 2 cut(s) 108, 159
BfrI CTTAAG 1 cut(s) 319
BisI GCNGC 2 cut(s) 162, 300
BlsI GCNGC 2 cut(s) 163, 301
BmgBI CACGTC 1 cut(s) 62
BmsI GCATC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 183, 264, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse1I ACTGG 3 cut(s) 89, 203, 233
BseDI CCNNGG 3 cut(s) 183, 264, 365
BseLI CCNNNNNNNGG 1 cut(s) 270
BseNI ACTGG 3 cut(s) 89, 203, 233
BseXI GCAGC 2 cut(s) 173, 286
BseYI CCCAGC 2 cut(s) 130, 242
BsgI GTGCAG 1 cut(s) 285
BshFI GGCC 2 cut(s) 26, 209
BslI CCNNNNNNNGG 1 cut(s) 270
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 2 cut(s) 26, 209
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 1 cut(s) 142
Bsp19I CCATGG 1 cut(s) 183
BspANI GGCC 2 cut(s) 26, 209
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 137
BspTI CTTAAG 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 3 cut(s) 89, 203, 233
BssECI CCNNGG 3 cut(s) 183, 264, 365
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 2 cut(s) 183, 365
Bst4CI ACNGT 1 cut(s) 387
BstAFI CTTAAG 1 cut(s) 319
BstAUI TGTACA 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 183
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstSFI CTRYAG 2 cut(s) 108, 159
BstV1I GCAGC 2 cut(s) 173, 286
BsuRI GGCC 2 cut(s) 26, 209
BtgI CCRYGG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 158
Csp6I GTAC 2 cut(s) 274, 388
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviAII CATG 1 cut(s) 184
CviJI RGCY 5 cut(s) 26, 188, 194, 209, 299
CviKI_1 RGCY 5 cut(s) 26, 188, 194, 209, 299
CviQI GTAC 2 cut(s) 274, 388
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EaeI YGGCCR 2 cut(s) 24, 207
Eco130I CCWWGG 2 cut(s) 183, 365
EcoT14I CCWWGG 2 cut(s) 183, 365
ErhI CCWWGG 2 cut(s) 183, 365
FaeI CATG 1 cut(s) 187
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 162, 300
Fsp4HI GCNGC 2 cut(s) 162, 300
GluI GCNGC 2 cut(s) 162, 300
GsaI CCCAGC 2 cut(s) 134, 246
HaeIII GGCC 2 cut(s) 26, 209
Hin1II CATG 1 cut(s) 187
HinfI GANTC 2 cut(s) 341, 401
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 268, 286
Hpy188III TCNNGA 2 cut(s) 152, 411
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 78, 263, 324
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 161, 230, 302, 359
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 1 cut(s) 187
Kzo9I GATC 1 cut(s) 142
Lsp1109I GCAGC 2 cut(s) 173, 286
LweI GCATC 1 cut(s) 217
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 398
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 187
MlsI TGGCCA 2 cut(s) 26, 209
MluCI AATT 1 cut(s) 4
MluNI TGGCCA 2 cut(s) 26, 209
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 4 cut(s) 25, 49, 87, 274
Mox20I TGGCCA 2 cut(s) 26, 209
MscI TGGCCA 2 cut(s) 26, 209
MseI TTAA 2 cut(s) 9, 320
Msp20I TGGCCA 2 cut(s) 26, 209
MspA1I CMGCKG 1 cut(s) 299
MspCI CTTAAG 1 cut(s) 319
Mva1269I GAATGC 1 cut(s) 184
NcoI CCATGG 1 cut(s) 183
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 398
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 163, 301
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PspFI CCCAGC 2 cut(s) 130, 242
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 2 cut(s) 275, 389
RsaNI GTAC 2 cut(s) 274, 388
SaqAI TTAA 2 cut(s) 9, 320
SatI GCNGC 2 cut(s) 162, 300
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 395
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 2 cut(s) 108, 159
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 1 cut(s) 4
StyI CCWWGG 2 cut(s) 183, 365
TaaI ACNGT 1 cut(s) 387
TaiI ACGT 1 cut(s) 64
TasI AATT 1 cut(s) 4
TatI WGTACW 1 cut(s) 387
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 9, 320
Tru9I TTAA 2 cut(s) 9, 320
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 2 cut(s) 161, 299
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 17, 240
TspRI CASTG 1 cut(s) 210
Vha464I CTTAAG 1 cut(s) 319
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.