Rh2CG431200

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004817
Physical Location & Seq
Forward (+)
58651877 .. 58653549
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG431200.1

Sequence Viewer

Length: 741 bp
ATGGAAGAGTACATCAGAGAAGCTCCCCGTGTCTCAATAGTTCGCAAGGAGGTGATTGACAATAAAATTTCTGCCCCCAAGGAAATCTTGGCCATAGAGGACAAAAAGACCCAAGACGATGAGGCACGTCCACCTTCCCCACCTCCACCTGAACCAGTAAAAGTGGTAGCACCTGTAGTTGAACCACTTGATTTGCTGGGTTTGAATGATCCTGTTCCAGATACTGCAGCATTAGATGAGAAGAATGCCATGGCTTTAGCTATTGTTCCAGTTTCTGATCAACCTGCGGCTCAACCTCAAGCAAATGGAACAGGTTGGGAATTGGCACTTGTTACAGCCCCAAGCTCAAATGAGAGTGCTACAGCTGCTAGCAAACTGGCGGGAGGGTTGGACTTGCTTACACTAGACAGCCTATATGATGATGCAATTAGAAGAAACAATCAAAATGTAAGCTACAACCCATGGGAGCAGGCTCTCATGAATGGTGGCATGATGCAACAACCAATTCATGATCCCTTTTATGCATCCAACACAGTGGCCGCACCCCCCTCTGTACAGATGGCCGCAATGGCCAACCAGCAGCAACAGGCCTTCATGTATCAACAACAGCAGATGATGATGATGGGCCAACAACAACCGCAATCTTTGAATCCTTTTGGGAATCCTCATGGAGCACCTGCGCACCCCTATGGAGCAGGTATGCCTGTCCAAGCATACAATCCATACACAGGCCTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

246

Amino Acids

26.56

Weight (kDa)

4.49

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 685
Acc16I TGCGCA 1 cut(s) 681
Acc36I ACCTGC 3 cut(s) 292, 685, 686
AciI CCGC 5 cut(s) 287, 380, 540, 564, 638
AclWI GGATC 2 cut(s) 203, 506
AcoI YGGCCR 4 cut(s) 90, 537, 561, 570
AcsI RAATTY 1 cut(s) 66
AfaI GTAC 2 cut(s) 11, 555
AfiI CCNNNNNNNGG 1 cut(s) 728
AgsI TTSAA 3 cut(s) 182, 205, 649
AjiI CACGTC 1 cut(s) 128
AluBI AGCT 5 cut(s) 23, 260, 345, 365, 453
AluI AGCT 5 cut(s) 23, 260, 345, 365, 453
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 203, 506
AlwNI CAGNNNCTG 2 cut(s) 224, 275
AoxI GGCC 7 cut(s) 90, 537, 561, 570, 588, 625, 730
ApeKI GCWGC 3 cut(s) 227, 365, 580
ApoI RAATTY 1 cut(s) 66
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 1 cut(s) 625
AsuHPI GGTGA 1 cut(s) 64
AsuNHI GCTAGC 1 cut(s) 368
BalI TGGCCA 2 cut(s) 92, 572
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 3 cut(s) 239, 352, 592
BccI CCATC 2 cut(s) 553, 616
BclI TGATCA 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 2 cut(s) 369, 404
BfmI CTRYAG 3 cut(s) 174, 225, 360
BfuAI ACCTGC 3 cut(s) 292, 685, 686
BglI GCCNNNNNGGC 1 cut(s) 569
BisI GCNGC 6 cut(s) 228, 288, 366, 540, 564, 581
BlsI GCNGC 6 cut(s) 229, 289, 367, 541, 565, 582
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 625
BmsI GCATC 3 cut(s) 412, 483, 533
BmtI GCTAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 78, 249, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse1I ACTGG 3 cut(s) 155, 269, 381
Bse3DI GCAATG 1 cut(s) 573
BseDI CCNNGG 3 cut(s) 78, 249, 461
BseGI GGATG 1 cut(s) 524
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMI GCAATG 1 cut(s) 573
BseNI ACTGG 3 cut(s) 155, 269, 381
BseXI GCAGC 3 cut(s) 239, 352, 592
BseYI CCCAGC 1 cut(s) 196
BshFI GGCC 7 cut(s) 92, 539, 563, 572, 590, 627, 732
BsiHKAI GWGCWC 1 cut(s) 676
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 7 cut(s) 92, 539, 563, 572, 590, 627, 732
Bsp1286I GDGCHC 1 cut(s) 676
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 3 cut(s) 208, 277, 511
Bsp19I CCATGG 2 cut(s) 249, 461
BspACI CCGC 5 cut(s) 287, 380, 540, 564, 638
BspANI GGCC 7 cut(s) 92, 539, 563, 572, 590, 627, 732
BspHI TCATGA 2 cut(s) 477, 508
BspMAI CTGCAG 1 cut(s) 229
BspMI ACCTGC 3 cut(s) 292, 685, 686
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 2 cut(s) 203, 506
BsrDI GCAATG 1 cut(s) 573
BsrGI TGTACA 1 cut(s) 553
BsrI ACTGG 3 cut(s) 155, 269, 381
BssECI CCNNGG 3 cut(s) 78, 249, 461
BssMI GATC 3 cut(s) 208, 277, 511
BssT1I CCWWGG 3 cut(s) 78, 249, 461
Bst4CI ACNGT 1 cut(s) 535
BstAUI TGTACA 1 cut(s) 553
BstC8I GCNNGC 2 cut(s) 370, 471
BstDSI CCRYGG 2 cut(s) 249, 461
BstF5I GGATG 1 cut(s) 524
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 3 cut(s) 211, 280, 514
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 3 cut(s) 208, 277, 511
BstMWI GCNNNNNNNGC 2 cut(s) 365, 569
BstSFI CTRYAG 3 cut(s) 174, 225, 360
BstV1I GCAGC 3 cut(s) 239, 352, 592
BstXI CCANNNNNNTGG 1 cut(s) 535
BsuRI GGCC 7 cut(s) 92, 539, 563, 572, 590, 627, 732
BtgI CCRYGG 2 cut(s) 249, 461
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 540
BveI ACCTGC 3 cut(s) 292, 685, 686
Cac8I GCNNGC 2 cut(s) 370, 471
CaiI CAGNNNCTG 2 cut(s) 224, 275
CciI TCATGA 2 cut(s) 477, 508
CfoI GCGC 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 625
Csp6I GTAC 2 cut(s) 10, 554
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 7 cut(s) 250, 462, 478, 490, 509, 595, 668
CviQI GTAC 2 cut(s) 10, 554
DpnI GATC 3 cut(s) 210, 279, 513
DpnII GATC 3 cut(s) 208, 277, 511
EaeI YGGCCR 4 cut(s) 90, 537, 561, 570
Eco130I CCWWGG 3 cut(s) 78, 249, 461
Eco147I AGGCCT 2 cut(s) 590, 732
EcoT14I CCWWGG 3 cut(s) 78, 249, 461
EcoT22I ATGCAT 1 cut(s) 526
ErhI CCWWGG 3 cut(s) 78, 249, 461
FaeI CATG 7 cut(s) 253, 465, 481, 493, 512, 598, 671
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 7 cut(s) 249, 461, 477, 489, 508, 594, 667
FauI CCCGC 1 cut(s) 373
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 6 cut(s) 228, 288, 366, 540, 564, 581
FokI GGATG 1 cut(s) 511
Fsp4HI GCNGC 6 cut(s) 228, 288, 366, 540, 564, 581
FspBI CTAG 2 cut(s) 369, 404
FspI TGCGCA 1 cut(s) 681
GlaI GCGC 1 cut(s) 681
GluI GCNGC 6 cut(s) 228, 288, 366, 540, 564, 581
GsaI CCCAGC 1 cut(s) 200
HaeIII GGCC 7 cut(s) 92, 539, 563, 572, 590, 627, 732
HhaI GCGC 1 cut(s) 682
Hin1II CATG 7 cut(s) 253, 465, 481, 493, 512, 598, 671
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HinfI GANTC 2 cut(s) 649, 661
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 17, 277
Hpy188III TCNNGA 3 cut(s) 218, 478, 509
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 144, 601
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 227, 425, 496, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 569
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 7 cut(s) 253, 465, 481, 493, 512, 598, 671
HspAI GCGC 1 cut(s) 680
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 3 cut(s) 208, 277, 511
LmnI GCTCC 4 cut(s) 28, 466, 671, 692
Lsp1109I GCAGC 3 cut(s) 239, 352, 592
LweI GCATC 3 cut(s) 412, 483, 533
MaeI CTAG 2 cut(s) 369, 404
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 331
MalI GATC 3 cut(s) 210, 279, 513
MboI GATC 3 cut(s) 208, 277, 511
MboII GAAGA 3 cut(s) 17, 253, 444
MhlI GDGCHC 1 cut(s) 676
MlsI TGGCCA 2 cut(s) 92, 572
MluCI AATT 4 cut(s) 66, 320, 426, 504
MluNI TGGCCA 2 cut(s) 92, 572
MmeI TCCRAC 2 cut(s) 369, 552
MnlI CCTC 8 cut(s) 43, 91, 115, 153, 306, 377, 559, 675
Mox20I TGGCCA 2 cut(s) 92, 572
Mph1103I ATGCAT 1 cut(s) 526
MscI TGGCCA 2 cut(s) 92, 572
MslI CAYNNNNRTG 1 cut(s) 687
Msp20I TGGCCA 2 cut(s) 92, 572
MspA1I CMGCKG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 365, 569
NcoI CCATGG 2 cut(s) 249, 461
NdeII GATC 3 cut(s) 208, 277, 511
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 7 cut(s) 253, 465, 481, 493, 512, 598, 671
NsbI TGCGCA 1 cut(s) 681
NsiI ATGCAT 1 cut(s) 526
PagI TCATGA 2 cut(s) 477, 508
PaqCI CACCTGC 1 cut(s) 685
PceI AGGCCT 2 cut(s) 590, 732
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 649, 661
PkrI GCNGC 6 cut(s) 229, 289, 367, 541, 565, 582
PspFI CCCAGC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 625
PstI CTGCAG 1 cut(s) 229
PstNI CAGNNNCTG 2 cut(s) 224, 275
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 2 cut(s) 11, 555
RsaNI GTAC 2 cut(s) 10, 554
RseI CAYNNNNRTG 1 cut(s) 687
SatI GCNGC 6 cut(s) 228, 288, 366, 540, 564, 581
Sau3AI GATC 3 cut(s) 208, 277, 511
Sau96I GGNCC 1 cut(s) 625
SduI GDGCHC 1 cut(s) 676
SfaNI GCATC 3 cut(s) 412, 483, 533
SfcI CTRYAG 3 cut(s) 174, 225, 360
SfiI GGCCNNNNNGGCC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 4 cut(s) 66, 320, 426, 504
SseBI AGGCCT 2 cut(s) 590, 732
SsiI CCGC 5 cut(s) 287, 380, 540, 564, 638
SspMI CTAG 2 cut(s) 369, 404
StuI AGGCCT 2 cut(s) 590, 732
StyI CCWWGG 3 cut(s) 78, 249, 461
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 1 cut(s) 130
TasI AATT 4 cut(s) 66, 320, 426, 504
TatI WGTACW 2 cut(s) 9, 553
TauI GCSGC 3 cut(s) 290, 542, 566
TfiI GAWTC 2 cut(s) 649, 661
TscAI CASTG 1 cut(s) 540
TseI GCWGC 3 cut(s) 227, 365, 580
TspDTI ATGAA 3 cut(s) 494, 497, 583
TspRI CASTG 1 cut(s) 540
XapI RAATTY 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 2 cut(s) 369, 404
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.