RLG00000015879

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004817
Physical Location & Seq
Forward (+)
2047142 .. 2051358
4217 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015879

Sequence Viewer

Length: 1170 bp
ATGGCAGGAGGGGGTGGCACGCAGAAGAGCATAAGAAAAGTACTTGGATCCCTCAAGGACACCACCACAGTTTCATTGGCGAAAGTCAATAGCGATTACAAGGAACTGGACATTGCGATAGTCAAGGCAACGAATCATGTTGAGCGTCCAGCCAAGGAAAAATACATCAGAGCTATATTCTCTGCTGTTTCTGCAACAAGACCGCGGGCTGATGTTGCATATTGCATCCATGGTCTTGCTAGGAGGTTAGCGAAGACACATAACTGGGCGGTTGCATTGAAAACTCTAATTGTTATTCATCGTGCTTTGAGGGAAGTGGACCCCACCTTTCATGAAGAACTCATGAATTATGGTAGAAGTAGAAACCATATGCTTAACTTGTCTCATTTCAAAGACGATTCCAGTCCAAATGCATGGGATTATTCAACCTGGATCCGTACCTATGCCTTGTTTTTGGAGGAGAGATTGGAGTGTTTTCGTGTGTTGAAATATGATGTTGAGATGGATCGCCCAAGGACCAAGGATTTGGACACTGCTGAATTGCTTGAGCATTTGCCTGCTCTGCAACAGCTTCTTTTTCGTGTTCTTGGTTGCCAGCCACAAGGGGCAGCAGTTCATAATTTTGTGGTCCAATTAGCACTTTCGATGGTTGCTTCAGAGAGCATCAAGATTTATCAAGCTATTAGTGACGGAACGGTCAATTTGGTTGACAAGTTCTTTGAGATGCAACGCCATGATGCTATGAAGGCTCTGGATATATATCGGAGGGCAGGACAGCAGGCAGAGAGACTGTCAGAGTTCTATGAAGTATGTAAGAGTCTTGATATTGGGCGAGGAGAAAAGTTTATTAAGATTGAGCAGGCTCCCATGAATGGTGGCATGATGCAACAACCAATTCATGATCCCTTTTATGCATCCAACACAGTGGCCGCACCACCCTCTGTACAGATGGCCGCAATGGCCAACCAGCAGCAACAGGCCTTCATGTATCAACAACAGCAGATGATGATGATGGGCCAACAACAACCGCAATCTTTGAATCCTTTTGGGAATCCTCATGGAGCACCTGCCCACCCCTATGGAGCAGTCGGAGGGAGGACTTTGAGCTATCTACATTTGCTGTTGTTCGGACTACAGGAAAATTCTTTTATCCTGCTTCGTCGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

390

Amino Acids

43.99

Weight (kDa)

8.94

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 35 - 291 1.3e-83 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1075
AasI GACNNNNNNGTC 1 cut(s) 695
Acc36I ACCTGC 1 cut(s) 1075
AccII CGCG 1 cut(s) 205
AciI CCGC 6 cut(s) 203, 205, 269, 930, 954, 1028
AclWI GGATC 6 cut(s) 42, 55, 427, 440, 513, 896
AcoI YGGCCR 3 cut(s) 927, 951, 960
AcsI RAATTY 1 cut(s) 1141
AcuI CTGAAG 1 cut(s) 639
AfaI GTAC 3 cut(s) 42, 439, 945
AfiI CCNNNNNNNGG 1 cut(s) 872
AgsI TTSAA 5 cut(s) 280, 391, 426, 487, 1039
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 4 cut(s) 173, 571, 680, 1107
AluI AGCT 4 cut(s) 173, 571, 680, 1107
Alw21I GWGCWC 1 cut(s) 1066
Alw26I GTCTC 2 cut(s) 387, 781
AlwI GGATC 6 cut(s) 42, 55, 427, 440, 513, 896
AoxI GGCC 5 cut(s) 927, 951, 960, 978, 1015
ApeKI GCWGC 2 cut(s) 608, 970
ApoI RAATTY 1 cut(s) 1141
ArsI GACNNNNNNTTYG 4 cut(s) 508, 540, 701, 733
AspS9I GGNCC 4 cut(s) 319, 516, 628, 1015
AvaII GGWCC 3 cut(s) 319, 516, 628
BalI TGGCCA 1 cut(s) 962
BamHI GGATCC 2 cut(s) 47, 432
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 1066
BbvI GCAGC 2 cut(s) 620, 982
BccI CCATC 4 cut(s) 496, 640, 943, 1006
BciT130I CCWGG 1 cut(s) 430
BcoDI GTCTC 2 cut(s) 387, 781
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 1133
BfuAI ACCTGC 1 cut(s) 1075
BglI GCCNNNNNGGC 1 cut(s) 959
BisI GCNGC 4 cut(s) 609, 930, 954, 971
BlsI GCNGC 4 cut(s) 610, 931, 955, 972
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 430
Bme18I GGWCC 3 cut(s) 319, 516, 628
BmgT120I GGNCC 4 cut(s) 319, 516, 628, 1015
BmiI GGNNCC 4 cut(s) 49, 321, 434, 864
BmrFI CCNGG 1 cut(s) 430
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 6 cut(s) 234, 672, 714, 727, 873, 923
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 260
BpuEI CTTGAG 2 cut(s) 38, 566
BsaBI GATNNNNATC 1 cut(s) 759
BsaJI CCNNGG 5 cut(s) 153, 203, 229, 512, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 872
Bse1I ACTGG 3 cut(s) 111, 269, 402
Bse3DI GCAATG 2 cut(s) 111, 963
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 5 cut(s) 153, 203, 229, 512, 519
BseGI GGATG 2 cut(s) 225, 914
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 1 cut(s) 872
BseMI GCAATG 2 cut(s) 111, 963
BseNI ACTGG 3 cut(s) 111, 269, 402
BseRI GAGGAG 2 cut(s) 473, 849
BseXI GCAGC 2 cut(s) 620, 982
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 5 cut(s) 929, 953, 962, 980, 1017
BsiHKAI GWGCWC 1 cut(s) 1066
BslI CCNNNNNNNGG 1 cut(s) 872
BsmAI GTCTC 2 cut(s) 387, 781
BsnI GGCC 5 cut(s) 929, 953, 962, 980, 1017
Bsp1286I GDGCHC 1 cut(s) 1066
Bsp1407I TGTACA 1 cut(s) 943
Bsp143I GATC 4 cut(s) 47, 432, 505, 901
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 6 cut(s) 203, 205, 269, 930, 954, 1028
BspANI GGCC 5 cut(s) 929, 953, 962, 980, 1017
BspFNI CGCG 1 cut(s) 205
BspHI TCATGA 3 cut(s) 331, 342, 898
BspLI GGNNCC 4 cut(s) 49, 321, 434, 864
BspMI ACCTGC 1 cut(s) 1075
BspPI GGATC 6 cut(s) 42, 55, 427, 440, 513, 896
BspQI GCTCTTC 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 111, 963
BsrGI TGTACA 1 cut(s) 943
BsrI ACTGG 3 cut(s) 111, 269, 402
BssECI CCNNGG 5 cut(s) 153, 203, 229, 512, 519
BssMI GATC 4 cut(s) 47, 432, 505, 901
BssT1I CCWWGG 4 cut(s) 153, 229, 512, 519
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 4 cut(s) 70, 697, 792, 925
Bst6I CTCTTC 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 943
BstC8I GCNNGC 6 cut(s) 20, 207, 558, 596, 780, 861
BstDSI CCRYGG 2 cut(s) 203, 229
BstF5I GGATG 2 cut(s) 225, 914
BstFNI CGCG 1 cut(s) 205
BstKTI GATC 4 cut(s) 50, 435, 508, 904
BstMAI GTCTC 2 cut(s) 387, 781
BstMBI GATC 4 cut(s) 47, 432, 505, 901
BstMWI GCNNNNNNNGC 5 cut(s) 191, 215, 562, 746, 959
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 428
BstSFI CTRYAG 1 cut(s) 1133
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 620, 982
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 47, 432
BstXI CCANNNNNNTGG 4 cut(s) 414, 526, 925, 1079
BstYI RGATCY 2 cut(s) 47, 432
BsuRI GGCC 5 cut(s) 929, 953, 962, 980, 1017
BtgI CCRYGG 2 cut(s) 203, 229
BtsCI GGATG 2 cut(s) 225, 914
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 2 cut(s) 531, 930
BveI ACCTGC 1 cut(s) 1075
Cac8I GCNNGC 6 cut(s) 20, 207, 558, 596, 780, 861
CciI TCATGA 3 cut(s) 331, 342, 898
Cfr13I GGNCC 4 cut(s) 319, 516, 628, 1015
Cfr42I CCGCGG 1 cut(s) 206
CseI GACGC 1 cut(s) 134
Csp6I GTAC 3 cut(s) 41, 438, 944
CviQI GTAC 3 cut(s) 41, 438, 944
DpnI GATC 4 cut(s) 49, 434, 507, 903
DpnII GATC 4 cut(s) 47, 432, 505, 901
DrdI GACNNNNNNGTC 1 cut(s) 695
DseDI GACNNNNNNGTC 1 cut(s) 695
EaeI YGGCCR 3 cut(s) 927, 951, 960
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 4 cut(s) 153, 229, 512, 519
Eco147I AGGCCT 1 cut(s) 980
Eco47I GGWCC 3 cut(s) 319, 516, 628
Eco57I CTGAAG 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 428
EcoT14I CCWWGG 4 cut(s) 153, 229, 512, 519
EcoT22I ATGCAT 2 cut(s) 415, 916
ErhI CCWWGG 4 cut(s) 153, 229, 512, 519
FauI CCCGC 1 cut(s) 198
FauNDI CATATG 1 cut(s) 369
Fnu4HI GCNGC 4 cut(s) 609, 930, 954, 971
FokI GGATG 2 cut(s) 212, 901
Fsp4HI GCNGC 4 cut(s) 609, 930, 954, 971
FspBI CTAG 1 cut(s) 240
GluI GCNGC 4 cut(s) 609, 930, 954, 971
HaeIII GGCC 5 cut(s) 929, 953, 962, 980, 1017
HgaI GACGC 1 cut(s) 134
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 5 cut(s) 133, 398, 817, 1039, 1051
Hpy166II GTNNAC 2 cut(s) 319, 709
Hpy188I TCNGA 6 cut(s) 170, 658, 765, 796, 1091, 1130
Hpy188III TCNNGA 6 cut(s) 332, 343, 667, 752, 821, 899
Hpy8I GTNNAC 2 cut(s) 319, 709
Hpy99I CGWCG 1 cut(s) 1164
HpyAV CCTTC 2 cut(s) 739, 991
HpyCH4III ACNGT 4 cut(s) 70, 697, 792, 925
HpyCH4V TGCA 9 cut(s) 194, 218, 225, 275, 413, 565, 727, 886, 914
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 215, 562, 746, 959
KspI CCGCGG 1 cut(s) 206
Kzo9I GATC 4 cut(s) 47, 432, 505, 901
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 3 cut(s) 868, 1061, 1082
Lsp1109I GCAGC 2 cut(s) 620, 982
LweI GCATC 6 cut(s) 234, 672, 714, 727, 873, 923
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 686
MalI GATC 4 cut(s) 49, 434, 507, 903
MboI GATC 4 cut(s) 47, 432, 505, 901
MboII GAAGA 3 cut(s) 37, 265, 347
MflI RGATCY 2 cut(s) 47, 432
MhlI GDGCHC 1 cut(s) 1066
MlsI TGGCCA 1 cut(s) 962
MluCI AATT 8 cut(s) 288, 346, 539, 619, 632, 700, 894, 1141
MluNI TGGCCA 1 cut(s) 962
MlyI GAGTC 1 cut(s) 826
MmeI TCCRAC 2 cut(s) 942, 1069
Mox20I TGGCCA 1 cut(s) 962
Mph1103I ATGCAT 2 cut(s) 415, 916
MscI TGGCCA 1 cut(s) 962
MseI TTAA 2 cut(s) 375, 849
MslI CAYNNNNRTG 1 cut(s) 1077
Msp20I TGGCCA 1 cut(s) 962
MspA1I CMGCKG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 430
MvaI CCWGG 1 cut(s) 430
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 5 cut(s) 191, 215, 562, 746, 959
NcoI CCATGG 1 cut(s) 229
NdeI CATATG 1 cut(s) 369
NdeII GATC 4 cut(s) 47, 432, 505, 901
NlaIV GGNNCC 4 cut(s) 49, 321, 434, 864
NmuCI GTSAC 1 cut(s) 686
NsiI ATGCAT 2 cut(s) 415, 916
PagI TCATGA 3 cut(s) 331, 342, 898
PaqCI CACCTGC 1 cut(s) 1075
PceI AGGCCT 1 cut(s) 980
PciSI GCTCTTC 1 cut(s) 20
PfeI GAWTC 4 cut(s) 133, 398, 1039, 1051
PkrI GCNGC 4 cut(s) 610, 931, 955, 972
PleI GAGTC 1 cut(s) 825
PpsI GAGTC 1 cut(s) 825
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 4 cut(s) 49, 321, 434, 864
PspPI GGNCC 4 cut(s) 319, 516, 628, 1015
PsuI RGATCY 2 cut(s) 47, 432
RsaI GTAC 3 cut(s) 42, 439, 945
RsaNI GTAC 3 cut(s) 41, 438, 944
RseI CAYNNNNRTG 1 cut(s) 1077
SacII CCGCGG 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 375, 849
SatI GCNGC 4 cut(s) 609, 930, 954, 971
Sau3AI GATC 4 cut(s) 47, 432, 505, 901
Sau96I GGNCC 4 cut(s) 319, 516, 628, 1015
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 1 cut(s) 826
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 1 cut(s) 1066
SetI ASST 9 cut(s) 175, 248, 329, 431, 443, 573, 682, 1069, 1109
SfaNI GCATC 6 cut(s) 234, 672, 714, 727, 873, 923
SfcI CTRYAG 1 cut(s) 1133
SfiI GGCCNNNNNGGCC 1 cut(s) 959
Sfr303I CCGCGG 1 cut(s) 206
SgrBI CCGCGG 1 cut(s) 206
SinI GGWCC 3 cut(s) 319, 516, 628
SmiMI CAYNNNNRTG 1 cut(s) 1077
SmlI CTYRAG 2 cut(s) 53, 545
SmoI CTYRAG 2 cut(s) 53, 545
Sse9I AATT 8 cut(s) 288, 346, 539, 619, 632, 700, 894, 1141
SseBI AGGCCT 1 cut(s) 980
SsiI CCGC 6 cut(s) 203, 205, 269, 930, 954, 1028
SspMI CTAG 1 cut(s) 240
StuI AGGCCT 1 cut(s) 980
StyD4I CCNGG 1 cut(s) 428
StyI CCWWGG 4 cut(s) 153, 229, 512, 519
TaaI ACNGT 4 cut(s) 70, 697, 792, 925
TaqI TCGA 1 cut(s) 644
TasI AATT 8 cut(s) 288, 346, 539, 619, 632, 700, 894, 1141
TatI WGTACW 2 cut(s) 40, 943
TauI GCSGC 2 cut(s) 932, 956
TfiI GAWTC 4 cut(s) 133, 398, 1039, 1051
Tru1I TTAA 2 cut(s) 375, 849
Tru9I TTAA 2 cut(s) 375, 849
TscAI CASTG 2 cut(s) 538, 930
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 2 cut(s) 608, 970
Tsp45I GTSAC 1 cut(s) 686
TspGWI ACGGA 2 cut(s) 425, 705
TspRI CASTG 2 cut(s) 538, 930
VpaK11BI GGWCC 3 cut(s) 319, 516, 628
XapI RAATTY 1 cut(s) 1141
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XspI CTAG 1 cut(s) 240
ZrmI AGTACT 1 cut(s) 42
Zsp2I ATGCAT 2 cut(s) 415, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.