Prupe.8G163400_v2.0.a1

Endo-1,4-beta-xylanase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
17063142 .. 17066203
3062 bp
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UTR
Exon/CDS
Intron
Prupe.8G163400.2

Sequence Viewer

Length: 1671 bp
ATGGAAGACACTTTCAGCTTTTGCCTCCTCATGTTCTTTCTCCTCCTCATGGGCTCCTCTGTTGCTTCCTTTGATGGTCCACTGTATGATTCTACTGCTTACACTGAGTGTAAAATGCAGCCTGGGGCAGCTCTGTACGGTGGAGGAATCATCAATGATCAAGCTTCAGGGGCTGAAGGCAGCTTGGGTAATTCTGCAACTACAAGCAGTGGTGTTTATTCACCATCTTTCATACTCCACAATCTCAGTCAAGGCACCATTTACTGTTTCTCCAGTTGGGTGAAGATAGAGGGTGCAGGCTCAGCTCTCATAAGGGCAAGCTTAAAGACAGAAAAAGAAACCTATGACTGCATAGGAACTGTTTTGGCTAAGCATGGATGCTGGTCATTTCTCAAGGGTGGGTTTGTGCTAAACTCACCATCTCAATTATCTATGCTATTCTTTCAGAACACAGATGACAGAGATGTCAACATAGAAATTGCAAGCTCTTCTCTGCAGCCATTCAGTGTTCAGCAATGGAGGACATATCAGCAATATATAATCAACACTAAAAGGAAACGTGCTGTGACAGTCCATGTCTCAAATGAACAAGGAAAGAGGCTGCAAGGAGTGACAATTAACATAGAGCAAGTCTCCAAAGATTTCCCATTTGGATCTGCAATTGCAAAGACCATTCTGGGAAATCTTCCATATCAGAATTGGTTTGTTAAGCGATTCAATGCTGCGGTTTTTGAAAACGAACTTAAATGGTATGCAACAGAGCCTGAACAAGGCAAGACCAACTACACCATAGCAGATCAGATGCTGCAATTTGTTCGTGCTAACCAGATTACTGCGAGAGGGCACAATATATTTTGGGAAGATCCCAAGTACACACCGGCATGGGTTCGTAACCTTACAGGCAATGAGCTACATTCAGCTGTCAACTCAAGAATTGAAAGCCTAATGAGCAAATACAGAGAAGAGTTCATCCATTGGGATGTCAGCAATGAAATGCTTCACTTTGATTTCTATGAGCAGAAGCTTGGGCCCAATGCCACATTGCATTTCTTTGAAACAGCACACAAATTTGACCCTTTGGCAACCCTTTTCATGAATGACTTTAATGTGGTGGAGACTTGCAGTGATGTAAATTCAACTGTTGATGCCTACATTTCAAGGTTGAGAGAGCTTAGATATGGTGGAGCATTAATGGATGGAATTGGACTAGAGGGTCATTTTATAGTACCAAACCCTCCTCTAATCAGAGCTATCCTAGACAAGTTGGCCACATTAAGCCTTCCTATTTGGCTCACAGAAGTTGATATTAGCAGCACTCTAGGCAAAGAAGCACAGGCCATTTATCTAGAACAAGTTTTAAGGGAAGGCTTCTCACATCCATCTGTGAATGGGATAATGCTTTGGACTGCTCTGCATCCTAATGGGTGCTACCAAATGTGCCTGACAGATAACAATCTTCAGAACCTACCAGCTGGAGATGTGGTGGACAAGCTCTTGAAAGAATGGCAAACTGGGGAGATAGAAGGGGAGACAGATGACCATGGATCATATAGCTTTTTTGGTTTCTTGGGTGAATACAAGGTAAGTGTCAAGTATGGCAATAAGACTTCAAGCTCAACATTCTCACTGTGTCAAGGTGAAGAAACTAGACACGTTAGCATTCAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

557

Amino Acids

62.31

Weight (kDa)

5.31

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 464, 1212
AccB1I GGYRCC 1 cut(s) 254
AciI CCGC 1 cut(s) 725
AclWI GGATC 3 cut(s) 661, 857, 1552
AcoI YGGCCR 1 cut(s) 1266
AcsI RAATTY 2 cut(s) 1067, 1132
AcuI CTGAAG 3 cut(s) 150, 195, 1442
AdeI CACNNNGTG 1 cut(s) 108
AfaI GTAC 3 cut(s) 137, 872, 1227
AfiI CCNNNNNNNGG 2 cut(s) 49, 770
AflIII ACRYGT 1 cut(s) 1651
AgsI TTSAA 8 cut(s) 718, 734, 938, 1055, 1137, 1158, 1498, 1611
AjnI CCWGG 1 cut(s) 121
Alw26I GTCTC 4 cut(s) 583, 637, 1109, 1523
AlwI GGATC 3 cut(s) 661, 857, 1552
AlwNI CAGNNNCTG 3 cut(s) 173, 764, 805
AoxI GGCC 3 cut(s) 1028, 1266, 1335
ApaI GGGCCC 1 cut(s) 1032
ApeKI GCWGC 8 cut(s) 118, 128, 180, 496, 601, 722, 805, 1311
ApoI RAATTY 2 cut(s) 1067, 1132
AseI ATTAAT 1 cut(s) 1190
Asp700I GAANNNNTTC 1 cut(s) 996
AspS9I GGNCC 3 cut(s) 77, 1028, 1029
AsuHPI GGTGA 5 cut(s) 213, 292, 408, 1583, 1649
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 2 cut(s) 846, 1032
BalI TGGCCA 1 cut(s) 1268
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 2 cut(s) 56, 1032
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 8 cut(s) 130, 140, 192, 508, 588, 709, 792, 1323
BccI CCATC 5 cut(s) 68, 232, 427, 1190, 1387
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 4 cut(s) 583, 637, 1109, 1523
BfaI CTAG 5 cut(s) 1208, 1256, 1319, 1346, 1647
BfmI CTRYAG 1 cut(s) 494
BisI GCNGC 8 cut(s) 119, 129, 181, 497, 602, 723, 806, 1312
BlpI GCTNAGC 2 cut(s) 301, 369
BlsI GCNGC 8 cut(s) 120, 130, 182, 498, 603, 724, 807, 1313
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 3 cut(s) 77, 1028, 1029
BmiI GGNNCC 3 cut(s) 55, 256, 1030
BmrFI CCNGG 1 cut(s) 123
BmrI ACTGGG 1 cut(s) 1521
BmsI GCATC 4 cut(s) 368, 792, 1135, 1423
BmuI ACTGGG 1 cut(s) 1521
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpmI CTGGAG 2 cut(s) 256, 1494
Bpu1102I GCTNAGC 2 cut(s) 301, 369
BpuEI CTTGAG 2 cut(s) 377, 913
BsaBI GATNNNNATC 1 cut(s) 1452
BsaJI CCNNGG 2 cut(s) 122, 1540
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 1467, 1497
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 770
Bse118I RCCGGY 1 cut(s) 877
Bse1I ACTGG 2 cut(s) 273, 1516
Bse3DI GCAATG 4 cut(s) 521, 910, 994, 1040
Bse8I GATNNNNATC 1 cut(s) 1452
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 122, 1540
BseGI GGATG 6 cut(s) 383, 969, 985, 1201, 1375, 1414
BseJI GATNNNNATC 1 cut(s) 1452
BseLI CCNNNNNNNGG 2 cut(s) 49, 770
BseMI GCAATG 4 cut(s) 521, 910, 994, 1040
BseMII CTCAG 3 cut(s) 96, 259, 315
BseNI ACTGG 2 cut(s) 273, 1516
BseRI GAGGAG 5 cut(s) 17, 32, 35, 46, 1227
BseSI GKGCMC 2 cut(s) 846, 1032
BseXI GCAGC 8 cut(s) 130, 140, 192, 508, 588, 709, 792, 1323
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 3 cut(s) 1030, 1268, 1337
BshNI GGYRCC 1 cut(s) 254
BsiSI CCGG 1 cut(s) 878
BslI CCNNNNNNNGG 2 cut(s) 49, 770
BsmAI GTCTC 4 cut(s) 583, 637, 1109, 1523
BsmI GAATGC 1 cut(s) 1659
BsnI GGCC 3 cut(s) 1030, 1268, 1337
Bsp120I GGGCCC 1 cut(s) 1028
Bsp1286I GDGCHC 3 cut(s) 56, 846, 1032
Bsp143I GATC 5 cut(s) 157, 653, 796, 862, 1544
Bsp1720I GCTNAGC 2 cut(s) 301, 369
Bsp19I CCATGG 1 cut(s) 1540
BspACI CCGC 1 cut(s) 725
BspANI GGCC 3 cut(s) 1030, 1268, 1337
BspCNI CTCAG 3 cut(s) 97, 258, 314
BspHI TCATGA 1 cut(s) 1092
BspLI GGNNCC 3 cut(s) 55, 256, 1030
BspMAI CTGCAG 1 cut(s) 498
BspPI GGATC 3 cut(s) 661, 857, 1552
BspQI GCTCTTC 1 cut(s) 493
BspT107I GGYRCC 1 cut(s) 254
BsrDI GCAATG 4 cut(s) 521, 910, 994, 1040
BsrFI RCCGGY 1 cut(s) 877
BsrI ACTGG 2 cut(s) 273, 1516
BssAI RCCGGY 1 cut(s) 877
BssECI CCNNGG 2 cut(s) 122, 1540
BssMI GATC 5 cut(s) 157, 653, 796, 862, 1544
BssT1I CCWWGG 1 cut(s) 1540
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 7 cut(s) 84, 140, 266, 361, 571, 1141, 1629
Bst6I CTCTTC 2 cut(s) 493, 957
BstC8I GCNNGC 3 cut(s) 298, 319, 484
BstDEI CTNAG 5 cut(s) 105, 245, 301, 369, 1172
BstDSI CCRYGG 1 cut(s) 1540
BstENI CCTNNNNNAGG 1 cut(s) 768
BstF5I GGATG 6 cut(s) 383, 969, 985, 1201, 1375, 1414
BstKTI GATC 5 cut(s) 160, 656, 799, 865, 1547
BstMAI GTCTC 4 cut(s) 583, 637, 1109, 1523
BstMBI GATC 5 cut(s) 157, 653, 796, 862, 1544
BstMWI GCNNNNNNNGC 4 cut(s) 170, 302, 948, 1320
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 494
BstSLI GKGCMC 2 cut(s) 846, 1032
BstV1I GCAGC 8 cut(s) 130, 140, 192, 508, 588, 709, 792, 1323
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 653, 862
BstYI RGATCY 2 cut(s) 653, 862
BsuRI GGCC 3 cut(s) 1030, 1268, 1337
BtgI CCRYGG 1 cut(s) 1540
BtsCI GGATG 6 cut(s) 383, 969, 985, 1201, 1375, 1414
BtsI GCAGTG 2 cut(s) 214, 1129
BtsIMutI CAGTG 6 cut(s) 80, 102, 214, 511, 1129, 1625
Cac8I GCNNGC 3 cut(s) 298, 319, 484
CaiI CAGNNNCTG 3 cut(s) 173, 764, 805
CciI TCATGA 1 cut(s) 1092
Cfr10I RCCGGY 1 cut(s) 877
Cfr13I GGNCC 3 cut(s) 77, 1028, 1029
Csp6I GTAC 3 cut(s) 136, 871, 1226
CviAII CATG 7 cut(s) 31, 49, 374, 575, 882, 1093, 1541
CviQI GTAC 3 cut(s) 136, 871, 1226
DdeI CTNAG 5 cut(s) 105, 245, 301, 369, 1172
DpnI GATC 5 cut(s) 159, 655, 798, 864, 1546
DpnII GATC 5 cut(s) 157, 653, 796, 862, 1544
DraIII CACNNNGTG 1 cut(s) 108
DrdI GACNNNNNNGTC 2 cut(s) 464, 1212
DseDI GACNNNNNNGTC 2 cut(s) 464, 1212
EaeI YGGCCR 1 cut(s) 1266
Eam1104I CTCTTC 2 cut(s) 493, 957
EarI CTCTTC 2 cut(s) 493, 957
Eco130I CCWWGG 1 cut(s) 1540
Eco24I GRGCYC 2 cut(s) 56, 1032
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 3 cut(s) 150, 195, 1442
EcoNI CCTNNNNNAGG 1 cut(s) 768
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 1540
EcoT38I GRGCYC 2 cut(s) 56, 1032
ErhI CCWWGG 1 cut(s) 1540
FaeI CATG 7 cut(s) 34, 52, 377, 578, 885, 1096, 1544
FatI CATG 7 cut(s) 30, 48, 373, 574, 881, 1092, 1540
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 8 cut(s) 119, 129, 181, 497, 602, 723, 806, 1312
FokI GGATG 6 cut(s) 390, 956, 992, 1208, 1362, 1401
FriOI GRGCYC 2 cut(s) 56, 1032
Fsp4HI GCNGC 8 cut(s) 119, 129, 181, 497, 602, 723, 806, 1312
FspBI CTAG 5 cut(s) 1208, 1256, 1319, 1346, 1647
GluI GCNGC 8 cut(s) 119, 129, 181, 497, 602, 723, 806, 1312
GsuI CTGGAG 2 cut(s) 256, 1494
HaeIII GGCC 3 cut(s) 1030, 1268, 1337
HapII CCGG 1 cut(s) 878
Hin1II CATG 7 cut(s) 34, 52, 377, 578, 885, 1096, 1544
HincII GTYRAC 2 cut(s) 469, 925
HindII GTYRAC 2 cut(s) 469, 925
HindIII AAGCTT 3 cut(s) 162, 319, 1022
HinfI GANTC 3 cut(s) 89, 147, 714
HpaII CCGG 1 cut(s) 878
HphI GGTGA 5 cut(s) 213, 292, 408, 1583, 1649
Hpy166II GTNNAC 5 cut(s) 80, 469, 873, 925, 1486
Hpy188I TCNGA 5 cut(s) 447, 696, 801, 1247, 1461
Hpy188III TCNNGA 4 cut(s) 930, 1093, 1346, 1495
Hpy8I GTNNAC 5 cut(s) 80, 469, 873, 925, 1486
HpyAV CCTTC 4 cut(s) 170, 1289, 1358, 1517
HpyCH4III ACNGT 7 cut(s) 84, 140, 266, 361, 571, 1141, 1629
HpyCH4IV ACGT 2 cut(s) 559, 1653
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 302, 948, 1320
HpyF3I CTNAG 5 cut(s) 105, 245, 301, 369, 1172
HpySE526I ACGT 2 cut(s) 559, 1653
Hsp92II CATG 7 cut(s) 34, 52, 377, 578, 885, 1096, 1544
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 5 cut(s) 157, 653, 796, 862, 1544
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 2 cut(s) 59, 1184
Lsp1109I GCAGC 8 cut(s) 130, 140, 192, 508, 588, 709, 792, 1323
LweI GCATC 4 cut(s) 368, 792, 1135, 1423
MaeI CTAG 5 cut(s) 1208, 1256, 1319, 1346, 1647
MaeII ACGT 2 cut(s) 559, 1653
MaeIII GTNAC 3 cut(s) 565, 610, 890
MalI GATC 5 cut(s) 159, 655, 798, 864, 1546
MboI GATC 5 cut(s) 157, 653, 796, 862, 1544
MboII GAAGA 8 cut(s) 17, 295, 480, 677, 872, 974, 1448, 1652
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 2 cut(s) 653, 862
MhlI GDGCHC 3 cut(s) 56, 846, 1032
MlsI TGGCCA 1 cut(s) 1268
MluNI TGGCCA 1 cut(s) 1268
Mox20I TGGCCA 1 cut(s) 1268
MroXI GAANNNNTTC 1 cut(s) 996
MscI TGGCCA 1 cut(s) 1268
MseI TTAA 8 cut(s) 323, 618, 708, 744, 1104, 1190, 1274, 1358
MslI CAYNNNNRTG 3 cut(s) 880, 978, 1419
Msp20I TGGCCA 1 cut(s) 1268
MspA1I CMGCKG 2 cut(s) 920, 1472
MspI CCGG 1 cut(s) 878
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 660
Mva1269I GAATGC 1 cut(s) 1659
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 170, 302, 948, 1320
NcoI CCATGG 1 cut(s) 1540
NdeII GATC 5 cut(s) 157, 653, 796, 862, 1544
NlaIII CATG 7 cut(s) 34, 52, 377, 578, 885, 1096, 1544
NlaIV GGNNCC 3 cut(s) 55, 256, 1030
NmuCI GTSAC 2 cut(s) 565, 610
PagI TCATGA 1 cut(s) 1092
PciSI GCTCTTC 1 cut(s) 493
PctI GAATGC 1 cut(s) 1659
PdmI GAANNNNTTC 1 cut(s) 996
PfeI GAWTC 3 cut(s) 89, 147, 714
PkrI GCNGC 8 cut(s) 120, 130, 182, 498, 603, 724, 807, 1313
PshBI ATTAAT 1 cut(s) 1190
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 55, 256, 1030
PspOMI GGGCCC 1 cut(s) 1028
PspPI GGNCC 3 cut(s) 77, 1028, 1029
PstI CTGCAG 1 cut(s) 498
PstNI CAGNNNCTG 3 cut(s) 173, 764, 805
PsuI RGATCY 2 cut(s) 653, 862
PvuII CAGCTG 2 cut(s) 920, 1472
RsaI GTAC 3 cut(s) 137, 872, 1227
RsaNI GTAC 3 cut(s) 136, 871, 1226
RseI CAYNNNNRTG 3 cut(s) 880, 978, 1419
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 8 cut(s) 323, 618, 708, 744, 1104, 1190, 1274, 1358
SatI GCNGC 8 cut(s) 119, 129, 181, 497, 602, 723, 806, 1312
Sau3AI GATC 5 cut(s) 157, 653, 796, 862, 1544
Sau96I GGNCC 3 cut(s) 77, 1028, 1029
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 3 cut(s) 56, 846, 1032
SfaNI GCATC 4 cut(s) 368, 792, 1135, 1423
SfcI CTRYAG 1 cut(s) 494
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 3 cut(s) 880, 978, 1419
SmlI CTYRAG 2 cut(s) 392, 928
SmoI CTYRAG 2 cut(s) 392, 928
SsiI CCGC 1 cut(s) 725
SspMI CTAG 5 cut(s) 1208, 1256, 1319, 1346, 1647
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 1540
TaaI ACNGT 7 cut(s) 84, 140, 266, 361, 571, 1141, 1629
TaiI ACGT 2 cut(s) 562, 1656
TatI WGTACW 1 cut(s) 870
TfiI GAWTC 3 cut(s) 89, 147, 714
Tru1I TTAA 8 cut(s) 323, 618, 708, 744, 1104, 1190, 1274, 1358
Tru9I TTAA 8 cut(s) 323, 618, 708, 744, 1104, 1190, 1274, 1358
TscAI CASTG 6 cut(s) 87, 109, 214, 511, 1129, 1632
TseFI GTSAC 2 cut(s) 565, 610
TseI GCWGC 8 cut(s) 118, 128, 180, 496, 601, 722, 805, 1311
Tsp45I GTSAC 2 cut(s) 565, 610
TspDTI ATGAA 6 cut(s) 220, 600, 958, 1005, 1081, 1109
TspRI CASTG 6 cut(s) 87, 109, 214, 511, 1129, 1632
VpaK11BI GGWCC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 1190
XagI CCTNNNNNAGG 1 cut(s) 768
XapI RAATTY 2 cut(s) 1067, 1132
XbaI TCTAGA 1 cut(s) 1345
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 996
XspI CTAG 5 cut(s) 1208, 1256, 1319, 1346, 1647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.