Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000638.1

Orthogroup ID

OG0004763

Physical Location & Seq

Genomic Coordinates Forward (+)

33694 .. 34011

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000638.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgagccaatacaaagaagagttcatccattgggatgtccacaatgaaatgcttcactttgctttcgaggagcaggaatcaccttggaattctttggccaccctttttataaatgagtttaatgtggtggagacttgcagtgatgtagattccagagttgatatctatgtctcatggctgagagaacttcaagaaggtggattttcaacggatgggattggattagatagtgggtcattttacaataccaaacactcctctagtgagagctattacggacaagtcactaggccttcctatttggctcatagatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_10

Protein Analysis

105

Amino Acids

12.23

Weight (kDa)

4.57

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38300 AT4G38650
fragaria_vesca	FvH4_2g01510 FvH4_2g01510 FvH4_2g01510 FvH4_2g01510
malus_domestica	MD05G1119000.v1.1 MD10G1122000.v1.1
prunus_persica	Prupe.8G163400_v2.0.a1 Prupe.8G163400_v2.0.a1
pyrus_communis	pycom05g11310
rosa_chinensis	RchiOBHm_Chr6g0244121 RchiOBHm_Chr6g0244171
rosa_laevigata	RLG00000015377 RLG00000015378 RLG00000015379
rosa_multiflora	Rmu_co8265637.1_g000001 Rmu_sc0000638.1_g000001 Rmu_sc0000638.1_g000015 Rmu_sc0001455.1_g000031
rosa_roxburghii	Rroxscaffold_7G00216050
rosa_rugosa	Rorug05G0507600 Rorug05G0507700
rosa_samantha	Rh6AG022100 Rh6BG017800 Rh6CG014600 Rh6CG014700 Rh6CG014800 Rh6DG015800 Rh6DG015900
rosa_wichuraiana	Rw6G001820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	191, 207
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	125, 175
AoxI	GGCC	2 cut(s)	96, 290
ApoI	RAATTY	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	98
BccI	CCATC	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	125, 175
BfaI	CTAG	2 cut(s)	261, 288
BsaJI	CCNNGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	3 cut(s)	24, 40, 217
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	83, 247
BshFI	GGCC	2 cut(s)	98, 292
BsmAI	GTCTC	2 cut(s)	125, 175
BsnI	GGCC	2 cut(s)	98, 292
BspANI	GGCC	2 cut(s)	98, 292
BspCNI	CTCAG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	3 cut(s)	24, 40, 217
BstMAI	GTCTC	2 cut(s)	125, 175
BsuRI	GGCC	2 cut(s)	98, 292
BtsCI	GGATG	3 cut(s)	24, 40, 217
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	6 cut(s)	6, 98, 178, 270, 292, 305
CviKI_1	RGCY	6 cut(s)	6, 98, 178, 270, 292, 305
DdeI	CTNAG	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	83
Eco147I	AGGCCT	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	1 cut(s)	177
FaiI	YATR	4 cut(s)	110, 168, 175, 309
FatI	CATG	1 cut(s)	173
FokI	GGATG	3 cut(s)	11, 47, 224
FspBI	CTAG	2 cut(s)	261, 288
HaeIII	GGCC	2 cut(s)	98, 292
Hin1II	CATG	1 cut(s)	177
HinfI	GANTC	2 cut(s)	77, 149
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	153, 191
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	188, 303
HpyCH4V	TGCA	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	2 cut(s)	59, 166
MaeI	CTAG	2 cut(s)	261, 288
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	98
MnlI	CCTC	2 cut(s)	61, 268
Mox20I	TGGCCA	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	98
NlaIII	CATG	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	77, 149
PsiI	TTATAA	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	120
SetI	ASST	3 cut(s)	85, 199, 272
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	1 cut(s)	88
SseBI	AGGCCT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	261, 288
StuI	AGGCCT	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	83
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	88
TfiI	GAWTC	2 cut(s)	77, 149
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	13, 60
TspGWI	ACGGA	2 cut(s)	224, 291
TspRI	CASTG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	2 cut(s)	261, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.