Rh6CG014700

Endo-1,4-beta-xylanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004763
Physical Location & Seq
Forward (+)
1595497 .. 1598198
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG014700.1

Sequence Viewer

Length: 1596 bp
ATGGGCGCTGCAGATGGTCCACTCTATGACTCTACTGCTTACACTGAGTGTAAAAGGCATCCAGAGAAGCCTCTATATGGTGGTGGGATTATTGTTGATGAGCCTTCAGCTGTTGTAGACAGAGACAATGGAGGTGTTTATTCACCGGCGTTCCTACTCCAAAATCTCACCGGCAACGGAACCATTTACAGCTTCTCCGGTTGGGTGAAGATAAGGAGTACAGTTTCAGCTCTCATACAGGCAAGTCTAAAGGCAGAAGATGAAACATACGATTGTATAGGAACTGTTTTGGCCAAGCGAGGATGCTGGTCATTCCTCAAAGGTGGCTTTGTCCTAAATGCACCATCTAATCTGTCTATACTATTCTTCCAGAATACAGATGGCGGAGATGTCAGCCTAGCAATTGCAAGCACTTCTTTGCAGCCATTTAGTGTTCAGCAATGGAATACATATCAGCAGTATATGATCAACACTAAAAGGAAGCGTGTCGTGACGGTCCATGTCTCAAATGAACAAGGAAAGGGGTTGCAAGGAGCTGCAATTACTGTAGAGCAAGTCTCCAAAGATTTCCCATTTGGATCTGCAATTTCAAAGACCATTCTAGGCAATTTACCCTACCAGAATTGGTTTGTTGAGAGATTCAATGCTGCGGTGTTTGAGAACGAACTCAAGTGGTATGCAACAGAACCTAATCAAGGCAATGTCACTTACACTATAGCAGATCAAATGTTGCAATTCGTTCGAGCTCACCAAATCACTGCTAGAGGGCACAATATATTCTGGGAAGATCCCAAATACACACCAGCTTGGGTTCGAAACCTCACAGCTGATCAGCTAAAATCAGCTGTCAACTCTCGGATACAAAGCCTAATGAGCAAATACAAAGAAGAGTTCATTAATTGGGATGTCAGCAATGAAATGCTTCACTTTGATTTCTATGAGAAACAACTTGGCCCCAATGCCACCTTGGATTTCTTTCAGACGGCACACAAATCCGATCCTTTGGCAACCCTTTTTATGAATGACTTTAATGTGGTGGAGAATTGCACTGATGTGAATTCCACAGTTGATACCTATGTCTCAAGGCTGAGAGAACTACAAGAAGGGGGAGTATCAATGGATGGGATTGGACTAGAGGGTCATTTTACAATACCAAACCCTCCTCTAATGAGAGCCAATATAGACAAGTTGGCTACACTAGGCCTTCCTATTTGGCTCACAGAGGTTGATATCAGCAACACTCTAGACAAAGAAACACAGGCCATTTACCTAGAGCAAGTATTAAGAGAAGGTTTCTCACATCCATCTGTAAATGGGATAATGCTCTGGAGTGCTCTACATCCTAACGGGTGCTACGAGATGTGTCTGACGGATAATAACCTTAAAAATCTACCAGCTGGTGATGTGGTGGACAAGCTCTTGAAAGAATGGCAAACCGGGAAGATAGAGGCTCAGATCAATGAGCATGGATCACATAGCTTTTTCGGGTTCTTGGGTGAGTACAGCATTACTGTCAAGTATGGAAATAGGACCGCAAGCTCAACATTCTCACTGTGTCAAGGGGAAGAAACTAGACATGTTAGCATTCAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_10

Protein Analysis

531

Amino Acids

59.29

Weight (kDa)

5.25

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_10 PF00331 186 - 445 2.2e-49 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1137
AccI GTMKAC 1 cut(s) 117
AciI CCGC 3 cut(s) 384, 650, 1533
AclWI GGATC 4 cut(s) 586, 782, 992, 1477
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 1 cut(s) 1057
AcuI CTGAAG 1 cut(s) 90
AdeI CACNNNGTG 1 cut(s) 48
AfaI GTAC 2 cut(s) 220, 1502
AfiI CCNNNNNNNGG 2 cut(s) 77, 695
AflIII ACRYGT 1 cut(s) 1576
AgsI TTSAA 4 cut(s) 591, 643, 1423, 1589
AleI CACNNNNGTG 1 cut(s) 1052
Alw21I GWGCWC 2 cut(s) 748, 1336
Alw26I GTCTC 4 cut(s) 117, 508, 562, 1084
AlwI GGATC 4 cut(s) 586, 782, 992, 1477
AoxI GGCC 4 cut(s) 291, 952, 1201, 1260
ApeKI GCWGC 4 cut(s) 8, 421, 536, 647
ApoI RAATTY 1 cut(s) 1057
AseI ATTAAT 1 cut(s) 897
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 4 cut(s) 17, 496, 953, 1530
AsuC2I CCSGG 1 cut(s) 1438
AsuHPI GGTGA 6 cut(s) 135, 160, 217, 740, 1412, 1508
AsuII TTCGAA 1 cut(s) 814
AvaII GGWCC 3 cut(s) 17, 496, 1530
BaeGI GKGCMC 1 cut(s) 771
BaeI ACNNNNGTAYC 2 cut(s) 1062, 1095
BalI TGGCCA 1 cut(s) 293
BanII GRGCYC 1 cut(s) 748
Bbv12I GWGCWC 2 cut(s) 748, 1336
BbvI GCAGC 3 cut(s) 433, 523, 634
BccI CCATC 5 cut(s) 8, 352, 374, 1115, 1312
BceAI ACGGC 1 cut(s) 999
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciVI GTATCC 1 cut(s) 852
BclI TGATCA 2 cut(s) 465, 829
BcnI CCSGG 1 cut(s) 1438
BcoDI GTCTC 4 cut(s) 117, 508, 562, 1084
BfaI CTAG 8 cut(s) 398, 602, 762, 1133, 1199, 1244, 1271, 1572
BfmI CTRYAG 3 cut(s) 9, 546, 714
BfoI RGCGCY 1 cut(s) 9
BfuI GTATCC 1 cut(s) 852
BisI GCNGC 4 cut(s) 9, 422, 537, 648
BlsI GCNGC 4 cut(s) 10, 423, 538, 649
Bme1390I CCNGG 1 cut(s) 1438
Bme18I GGWCC 3 cut(s) 17, 496, 1530
BmgT120I GGNCC 4 cut(s) 17, 496, 953, 1530
BmiI GGNNCC 2 cut(s) 181, 955
BmrFI CCNGG 1 cut(s) 1438
BmsI GCATC 2 cut(s) 67, 293
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpmI CTGGAG 1 cut(s) 1348
Bpu14I TTCGAA 1 cut(s) 814
BpuEI CTTGAG 2 cut(s) 653, 1066
BpuMI CCSGG 1 cut(s) 1438
BsaJI CCNNGG 1 cut(s) 966
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 695
Bse118I RCCGGY 2 cut(s) 145, 170
Bse3DI GCAATG 3 cut(s) 446, 706, 919
BseDI CCNNGG 1 cut(s) 966
BseGI GGATG 6 cut(s) 58, 308, 910, 1126, 1300, 1339
BseLI CCNNNNNNNGG 2 cut(s) 77, 695
BseMI GCAATG 3 cut(s) 446, 706, 919
BseMII CTCAG 3 cut(s) 36, 1079, 1466
BseRI GAGGAG 1 cut(s) 1152
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 3 cut(s) 433, 523, 634
BshFI GGCC 4 cut(s) 293, 954, 1203, 1262
BsiHKAI GWGCWC 2 cut(s) 748, 1336
BsiSI CCGG 4 cut(s) 146, 171, 198, 1437
BslI CCNNNNNNNGG 2 cut(s) 77, 695
BsmAI GTCTC 4 cut(s) 117, 508, 562, 1084
BsmI GAATGC 1 cut(s) 1584
BsnI GGCC 4 cut(s) 293, 954, 1203, 1262
Bsp119I TTCGAA 1 cut(s) 814
Bsp1286I GDGCHC 3 cut(s) 748, 771, 1336
Bsp143I GATC 8 cut(s) 465, 578, 721, 787, 829, 997, 1455, 1469
BspACI CCGC 3 cut(s) 384, 650, 1533
BspANI GGCC 4 cut(s) 293, 954, 1203, 1262
BspCNI CTCAG 3 cut(s) 37, 1080, 1465
BspLI GGNNCC 2 cut(s) 181, 955
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 4 cut(s) 586, 782, 992, 1477
BspT104I TTCGAA 1 cut(s) 814
BsrDI GCAATG 3 cut(s) 446, 706, 919
BsrFI RCCGGY 2 cut(s) 145, 170
BssAI RCCGGY 2 cut(s) 145, 170
BssECI CCNNGG 1 cut(s) 966
BssMI GATC 8 cut(s) 465, 578, 721, 787, 829, 997, 1455, 1469
BssT1I CCWWGG 1 cut(s) 966
Bst4CI ACNGT 7 cut(s) 223, 286, 496, 547, 1066, 1513, 1554
Bst6I CTCTTC 1 cut(s) 882
BstBI TTCGAA 1 cut(s) 814
BstC8I GCNNGC 2 cut(s) 409, 1537
BstDEI CTNAG 3 cut(s) 45, 1088, 1452
BstENI CCTNNNNNAGG 1 cut(s) 693
BstF5I GGATG 6 cut(s) 58, 308, 910, 1126, 1300, 1339
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 8 cut(s) 468, 581, 724, 790, 832, 1000, 1458, 1472
BstMAI GTCTC 4 cut(s) 117, 508, 562, 1084
BstMBI GATC 8 cut(s) 465, 578, 721, 787, 829, 997, 1455, 1469
BstMWI GCNNNNNNNGC 1 cut(s) 873
BstNSI RCATGY 1 cut(s) 1580
BstSCI CCNGG 1 cut(s) 1436
BstSFI CTRYAG 3 cut(s) 9, 546, 714
BstSLI GKGCMC 1 cut(s) 771
BstV1I GCAGC 3 cut(s) 433, 523, 634
BstX2I RGATCY 2 cut(s) 578, 787
BstYI RGATCY 2 cut(s) 578, 787
BsuI GTATCC 1 cut(s) 852
BsuRI GGCC 4 cut(s) 293, 954, 1203, 1262
BtsCI GGATG 6 cut(s) 58, 308, 910, 1126, 1300, 1339
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 4 cut(s) 42, 756, 1047, 1550
Cac8I GCNNGC 2 cut(s) 409, 1537
CfoI GCGC 1 cut(s) 8
Cfr10I RCCGGY 2 cut(s) 145, 170
Cfr13I GGNCC 4 cut(s) 17, 496, 953, 1530
Csp6I GTAC 2 cut(s) 219, 1501
CviAII CATG 3 cut(s) 500, 1466, 1577
CviQI GTAC 2 cut(s) 219, 1501
DdeI CTNAG 3 cut(s) 45, 1088, 1452
DpnI GATC 8 cut(s) 467, 580, 723, 789, 831, 999, 1457, 1471
DpnII GATC 8 cut(s) 465, 578, 721, 787, 829, 997, 1455, 1469
DraIII CACNNNGTG 1 cut(s) 48
DrdI GACNNNNNNGTC 1 cut(s) 1137
DseDI GACNNNNNNGTC 1 cut(s) 1137
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
EciI GGCGGA 1 cut(s) 399
Ecl136II GAGCTC 1 cut(s) 746
Eco130I CCWWGG 1 cut(s) 966
Eco147I AGGCCT 1 cut(s) 1203
Eco24I GRGCYC 1 cut(s) 748
Eco32I GATATC 1 cut(s) 1231
Eco47I GGWCC 3 cut(s) 17, 496, 1530
Eco53kI GAGCTC 1 cut(s) 746
Eco57I CTGAAG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 746
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoRI GAATTC 1 cut(s) 1057
EcoRV GATATC 1 cut(s) 1231
EcoT14I CCWWGG 1 cut(s) 966
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 966
FaeI CATG 3 cut(s) 503, 1469, 1580
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FatI CATG 3 cut(s) 499, 1465, 1576
FbaI TGATCA 2 cut(s) 465, 829
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 4 cut(s) 9, 422, 537, 648
FokI GGATG 6 cut(s) 45, 315, 917, 1133, 1287, 1326
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 4 cut(s) 9, 422, 537, 648
FspBI CTAG 8 cut(s) 398, 602, 762, 1133, 1199, 1244, 1271, 1572
GlaI GCGC 1 cut(s) 7
GluI GCNGC 4 cut(s) 9, 422, 537, 648
GsuI CTGGAG 1 cut(s) 1348
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 4 cut(s) 293, 954, 1203, 1262
HapII CCGG 4 cut(s) 146, 171, 198, 1437
HhaI GCGC 1 cut(s) 8
Hin1II CATG 3 cut(s) 503, 1469, 1580
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HinfI GANTC 2 cut(s) 29, 639
HpaII CCGG 4 cut(s) 146, 171, 198, 1437
HphI GGTGA 6 cut(s) 135, 160, 217, 740, 1412, 1508
Hpy166II GTNNAC 4 cut(s) 20, 118, 850, 1411
Hpy188I TCNGA 5 cut(s) 858, 981, 997, 1368, 1455
Hpy188III TCNNGA 6 cut(s) 62, 370, 490, 1244, 1327, 1420
Hpy8I GTNNAC 4 cut(s) 20, 118, 850, 1411
HpyAV CCTTC 4 cut(s) 114, 1097, 1214, 1283
HpyCH4III ACNGT 7 cut(s) 223, 286, 496, 547, 1066, 1513, 1554
HpyF10VI GCNNNNNNNGC 1 cut(s) 873
HpyF3I CTNAG 3 cut(s) 45, 1088, 1452
Hsp92II CATG 3 cut(s) 503, 1469, 1580
HspAI GCGC 1 cut(s) 6
Ksp22I TGATCA 2 cut(s) 465, 829
Kzo9I GATC 8 cut(s) 465, 578, 721, 787, 829, 997, 1455, 1469
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 3 cut(s) 433, 523, 634
LweI GCATC 2 cut(s) 67, 293
MaeI CTAG 8 cut(s) 398, 602, 762, 1133, 1199, 1244, 1271, 1572
MaeIII GTNAC 2 cut(s) 490, 703
MalI GATC 8 cut(s) 467, 580, 723, 789, 831, 999, 1457, 1471
MboI GATC 8 cut(s) 465, 578, 721, 787, 829, 997, 1455, 1469
MboII GAAGA 7 cut(s) 220, 269, 358, 797, 899, 1453, 1577
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 2 cut(s) 578, 787
MhlI GDGCHC 3 cut(s) 748, 771, 1336
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 9 cut(s) 402, 540, 585, 607, 622, 734, 898, 1042, 1057
MluNI TGGCCA 1 cut(s) 293
MlyI GAGTC 1 cut(s) 23
Mox20I TGGCCA 1 cut(s) 293
MroXI GAANNNNTTC 1 cut(s) 921
MscI TGGCCA 1 cut(s) 293
MseI TTAA 5 cut(s) 897, 1029, 1283, 1383, 1594
MslI CAYNNNNRTG 1 cut(s) 1052
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 4 cut(s) 110, 827, 845, 1397
MspI CCGG 4 cut(s) 146, 171, 198, 1437
MspR9I CCNGG 1 cut(s) 1438
MunI CAATTG 1 cut(s) 402
Mva1269I GAATGC 1 cut(s) 1584
MwoI GCNNNNNNNGC 1 cut(s) 873
NciI CCSGG 1 cut(s) 1438
NdeII GATC 8 cut(s) 465, 578, 721, 787, 829, 997, 1455, 1469
NlaIII CATG 3 cut(s) 503, 1469, 1580
NlaIV GGNNCC 2 cut(s) 181, 955
NmuCI GTSAC 2 cut(s) 490, 703
NspI RCATGY 1 cut(s) 1580
NspV TTCGAA 1 cut(s) 814
OliI CACNNNNGTG 1 cut(s) 1052
PceI AGGCCT 1 cut(s) 1203
PciI ACATGT 1 cut(s) 1576
PcsI WCGNNNNNNNCGW 1 cut(s) 1353
PctI GAATGC 1 cut(s) 1584
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 1 cut(s) 639
PkrI GCNGC 4 cut(s) 10, 423, 538, 649
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PscI ACATGT 1 cut(s) 1576
PshBI ATTAAT 1 cut(s) 897
Psp124BI GAGCTC 1 cut(s) 748
PspN4I GGNNCC 2 cut(s) 181, 955
PspPI GGNCC 4 cut(s) 17, 496, 953, 1530
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 2 cut(s) 578, 787
PvuII CAGCTG 4 cut(s) 110, 827, 845, 1397
RsaI GTAC 2 cut(s) 220, 1502
RsaNI GTAC 2 cut(s) 219, 1501
RseI CAYNNNNRTG 1 cut(s) 1052
SacI GAGCTC 1 cut(s) 748
SaqAI TTAA 5 cut(s) 897, 1029, 1283, 1383, 1594
SatI GCNGC 4 cut(s) 9, 422, 537, 648
Sau3AI GATC 8 cut(s) 465, 578, 721, 787, 829, 997, 1455, 1469
Sau96I GGNCC 4 cut(s) 17, 496, 953, 1530
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 1438
SduI GDGCHC 3 cut(s) 748, 771, 1336
SfaNI GCATC 2 cut(s) 67, 293
SfcI CTRYAG 3 cut(s) 9, 546, 714
SfuI TTCGAA 1 cut(s) 814
SgrAI CRCCGGYG 1 cut(s) 145
SinI GGWCC 3 cut(s) 17, 496, 1530
SmiMI CAYNNNNRTG 1 cut(s) 1052
SmlI CTYRAG 2 cut(s) 668, 1081
SmoI CTYRAG 2 cut(s) 668, 1081
Sse9I AATT 9 cut(s) 402, 540, 585, 607, 622, 734, 898, 1042, 1057
SseBI AGGCCT 1 cut(s) 1203
SsiI CCGC 3 cut(s) 384, 650, 1533
SspMI CTAG 8 cut(s) 398, 602, 762, 1133, 1199, 1244, 1271, 1572
SstI GAGCTC 1 cut(s) 748
StuI AGGCCT 1 cut(s) 1203
StyD4I CCNGG 1 cut(s) 1436
StyI CCWWGG 1 cut(s) 966
TaaI ACNGT 7 cut(s) 223, 286, 496, 547, 1066, 1513, 1554
TaqI TCGA 2 cut(s) 742, 814
TasI AATT 9 cut(s) 402, 540, 585, 607, 622, 734, 898, 1042, 1057
TatI WGTACW 2 cut(s) 218, 1500
TfiI GAWTC 1 cut(s) 639
Tru1I TTAA 5 cut(s) 897, 1029, 1283, 1383, 1594
Tru9I TTAA 5 cut(s) 897, 1029, 1283, 1383, 1594
TscAI CASTG 4 cut(s) 49, 763, 1054, 1557
TseFI GTSAC 2 cut(s) 490, 703
TseI GCWGC 4 cut(s) 8, 421, 536, 647
Tsp45I GTSAC 2 cut(s) 490, 703
TspDTI ATGAA 5 cut(s) 276, 525, 883, 930, 1034
TspGWI ACGGA 2 cut(s) 192, 1385
TspRI CASTG 4 cut(s) 49, 763, 1054, 1557
VpaK11BI GGWCC 3 cut(s) 17, 496, 1530
VspI ATTAAT 1 cut(s) 897
XagI CCTNNNNNAGG 1 cut(s) 693
XapI RAATTY 1 cut(s) 1057
XbaI TCTAGA 1 cut(s) 1243
XceI RCATGY 1 cut(s) 1580
XcmI CCANNNNNNNNNTGG 2 cut(s) 377, 964
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 8 cut(s) 398, 602, 762, 1133, 1199, 1244, 1271, 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.