Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004763

Physical Location & Seq

Genomic Coordinates Reverse (-)

65245834 .. 65247600

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGGGAAGAGTGCCGTCATGAGACCGTTGGAGACTCGACTCTTTTGGCTGTATGCAACAAATCAAGCCATTTCGATGGCATGAGGAGGGACAGTATGGATGCGGTGACGTCCTCCGGGAGCTTCAGCCAGTTTTGTCTTGAAGCCACTAGCATATGTTTCATTGAAACCCACCGGAACCATAAGCGTGCAATTGATCTTGTGATACGGCTTAAATTGCGTGACTTGAACTTGCCGAAGTTGTGGCTTTTATCCAAAGAGCAAGATAACCAAATCACTGTTAGAGGGCACAATGTATTCTGGGAAGATCCTAAATATACACCAGCTTGGATTCAGAACCTCACAGGCAATAAGCTAAAACCAACCATCATCTCTCGAAAAAGCCTTATGAGCCAACACAAAGAAGAGTTCATCCATTGGGATGTCCACGATGAAATGCTTCACTTTGCTTTCGAGGAGCAGGAATCACCTAGGAATTCTTTGGCCACCCTTTTTATAAATGAGTTTAATGTGGTGGAGACTTGCAGTGATGTAGATTCCAGAGTTGATATCTATGTCTCATGGCTGAGAGAACTCCAAGAAGGTGGATTTTCAACGGATGGGATTGGATTAGATAGTGGGTCATTTTACAATACCAAACCCTCCTCTAATGAGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_10

Protein Analysis

221

Amino Acids

25.3

Weight (kDa)

5.35

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38300 AT4G38650
fragaria_vesca	FvH4_2g01510 FvH4_2g01510 FvH4_2g01510 FvH4_2g01510
malus_domestica	MD05G1119000.v1.1 MD10G1122000.v1.1
prunus_persica	Prupe.8G163400_v2.0.a1 Prupe.8G163400_v2.0.a1
pyrus_communis	pycom05g11310
rosa_chinensis	RchiOBHm_Chr6g0244121 RchiOBHm_Chr6g0244171
rosa_laevigata	RLG00000015377 RLG00000015378 RLG00000015379
rosa_multiflora	Rmu_co8265637.1_g000001 Rmu_sc0000638.1_g000001 Rmu_sc0000638.1_g000015 Rmu_sc0001455.1_g000031
rosa_roxburghii	Rroxscaffold_7G00216050
rosa_rugosa	Rorug05G0507600 Rorug05G0507700
rosa_samantha	Rh6AG022100 Rh6BG017800 Rh6CG014600 Rh6CG014700 Rh6CG014800 Rh6DG015800 Rh6DG015900
rosa_wichuraiana	Rw6G001820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AatII	GACGTC	1 cut(s)	113
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	110
AgsI	TTSAA	4 cut(s)	143, 167, 229, 594
AluBI	AGCT	4 cut(s)	123, 326, 355, 657
AluI	AGCT	4 cut(s)	123, 326, 355, 657
Alw26I	GTCTC	4 cut(s)	17, 27, 512, 562
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	1 cut(s)	483
ApoI	RAATTY	1 cut(s)	475
Asp700I	GAANNNNTTC	1 cut(s)	438
AspA2I	CCTAGG	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	118, 459
AvrII	CCTAGG	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	485
BccI	CCATC	3 cut(s)	71, 374, 593
BceAI	ACGGC	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	4 cut(s)	17, 27, 512, 562
BfaI	CTAG	2 cut(s)	150, 471
BlnI	CCTAGG	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	4 cut(s)	106, 411, 427, 604
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	3 cut(s)	100, 470, 634
BseSI	GKGCMC	1 cut(s)	291
BshFI	GGCC	1 cut(s)	485
BsiSI	CCGG	2 cut(s)	117, 175
BslFI	GGGAC	1 cut(s)	104
BsmAI	GTCTC	4 cut(s)	17, 27, 512, 562
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	196, 307
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	558
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	2 cut(s)	196, 307
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	470
Bst4CI	ACNGT	3 cut(s)	28, 95, 280
Bst6I	CTCTTC	2 cut(s)	3, 399
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	566
BstF5I	GGATG	4 cut(s)	106, 411, 427, 604
BstKTI	GATC	2 cut(s)	199, 310
BstMAI	GTCTC	4 cut(s)	17, 27, 512, 562
BstMBI	GATC	2 cut(s)	196, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 390
BstSCI	CCNGG	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	2 cut(s)	77, 584
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	4 cut(s)	106, 411, 427, 604
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	276, 532
Cac8I	GCNNGC	1 cut(s)	189
CciI	TCATGA	1 cut(s)	19
CviAII	CATG	3 cut(s)	20, 82, 561
DdeI	CTNAG	1 cut(s)	566
DpnI	GATC	2 cut(s)	198, 309
DpnII	GATC	2 cut(s)	196, 307
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	2 cut(s)	3, 399
EarI	CTCTTC	2 cut(s)	3, 399
Eco130I	CCWWGG	1 cut(s)	470
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	475
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	3 cut(s)	23, 85, 564
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	3 cut(s)	19, 81, 560
FauNDI	CATATG	1 cut(s)	155
FokI	GGATG	4 cut(s)	113, 398, 434, 611
FspBI	CTAG	2 cut(s)	150, 471
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	2 cut(s)	117, 175
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	23, 85, 564
HinfI	GANTC	5 cut(s)	35, 40, 331, 464, 536
HpaII	CCGG	2 cut(s)	117, 175
HphI	GGTGA	2 cut(s)	118, 459
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	4 cut(s)	20, 140, 375, 540
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	575
HpyCH4III	ACNGT	3 cut(s)	28, 95, 280
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	57, 191, 525
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 390
HpyF3I	CTNAG	1 cut(s)	566
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	23, 85, 564
Kzo9I	GATC	2 cut(s)	196, 307
LmnI	GCTCC	2 cut(s)	120, 457
LpnPI	CCDG	8 cut(s)	130, 143, 188, 286, 330, 336, 446, 553
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	150, 471
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	106, 221
MalI	GATC	2 cut(s)	198, 309
MboI	GATC	2 cut(s)	196, 307
MboII	GAAGA	3 cut(s)	20, 317, 416
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	3 cut(s)	192, 215, 475
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	2 cut(s)	29, 34
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	8 cut(s)	78, 81, 124, 278, 350, 448, 652, 655
Mox20I	TGGCCA	1 cut(s)	485
MroXI	GAANNNNTTC	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	3 cut(s)	213, 507, 661
MslI	CAYNNNNRTG	3 cut(s)	75, 186, 420
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	2 cut(s)	117, 175
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	217, 390
NciI	CCSGG	1 cut(s)	118
NdeI	CATATG	1 cut(s)	155
NdeII	GATC	2 cut(s)	196, 307
NlaIII	CATG	3 cut(s)	23, 85, 564
NlaIV	GGNNCC	1 cut(s)	179
NmuCI	GTSAC	2 cut(s)	106, 221
PagI	TCATGA	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	3 cut(s)	331, 464, 536
PfoI	TCCNGGA	1 cut(s)	116
PleI	GAGTC	2 cut(s)	29, 34
PpsI	GAGTC	2 cut(s)	29, 34
PsiI	TTATAA	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	307
RseI	CAYNNNNRTG	3 cut(s)	75, 186, 420
SaqAI	TTAA	3 cut(s)	213, 507, 661
Sau3AI	GATC	2 cut(s)	196, 307
SchI	GAGTC	2 cut(s)	29, 34
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	8 cut(s)	113, 125, 328, 342, 357, 472, 586, 659
SfaNI	GCATC	1 cut(s)	91
SmiMI	CAYNNNNRTG	3 cut(s)	75, 186, 420
Sse9I	AATT	3 cut(s)	192, 215, 475
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	2 cut(s)	150, 471
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	3 cut(s)	28, 95, 280
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	38, 75, 376, 453
TasI	AATT	3 cut(s)	192, 215, 475
TfiI	GAWTC	3 cut(s)	331, 464, 536
Tru1I	TTAA	3 cut(s)	213, 507, 661
Tru9I	TTAA	3 cut(s)	213, 507, 661
TscAI	CASTG	2 cut(s)	283, 532
TseFI	GTSAC	2 cut(s)	106, 221
Tsp45I	GTSAC	2 cut(s)	106, 221
TspDTI	ATGAA	3 cut(s)	151, 400, 447
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	2 cut(s)	283, 532
XapI	RAATTY	1 cut(s)	475
XmaJI	CCTAGG	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	2 cut(s)	150, 471
ZraI	GACGTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.