Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004763

Physical Location & Seq

Genomic Coordinates Reverse (-)

69026786 .. 69027337

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0507600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTTTTATTATCTTTTACTCATATTAAGTTATGGCTTTCTACCTGCAATAATAACCTACTACTCTATGGTAGGACGAAGTGGGATTTGTCCCGGTATGCACACTCAGTGTGCCTTGTCTGGTTTAGCGAGGCGGCGAGCTATTTGCATGATCAAATGGACGCAACCTCCTAGTGGCAGAATGAAACGAAGTGTCGCCGGATTTACTTCCGTGTGGCAACATAGTGGGAAAGCTATGCTATTTGTAATGATGCTTCTTCGTGATAGAGTTATCTTTCTGGTATGTCACCACAATGTCAAAGCAAATGGAGTAGCTATTTGTGCACTCGTTGCTAATTGGTGCTTGTTAGAATACATAGATTTTGTGGAGAATCTTAGTAATATTTCAGGATATTCTCTCAATGCTTATTGTAATTTGGGGTTTAATCTTCATGTCCCCCCCCCCCTTGTATTCTGCAGTTTCATTAATCAAGGCTTGAAGGCAGCTGCACCAGCCCCATTTCAAAAAAAAAAAAAAAAAGATAAAATCCAAGTTATTAAATACAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_10

Protein Analysis

183

Amino Acids

20.59

Weight (kDa)

9.72

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38300 AT4G38650
fragaria_vesca	FvH4_2g01510 FvH4_2g01510 FvH4_2g01510 FvH4_2g01510
malus_domestica	MD05G1119000.v1.1 MD10G1122000.v1.1
prunus_persica	Prupe.8G163400_v2.0.a1 Prupe.8G163400_v2.0.a1
pyrus_communis	pycom05g11310
rosa_chinensis	RchiOBHm_Chr6g0244121 RchiOBHm_Chr6g0244171
rosa_laevigata	RLG00000015377 RLG00000015378 RLG00000015379
rosa_multiflora	Rmu_co8265637.1_g000001 Rmu_sc0000638.1_g000001 Rmu_sc0000638.1_g000015 Rmu_sc0001455.1_g000031
rosa_roxburghii	Rroxscaffold_7G00216050
rosa_rugosa	Rorug05G0507600 Rorug05G0507700
rosa_samantha	Rh6AG022100 Rh6BG017800 Rh6CG014600 Rh6CG014700 Rh6CG014800 Rh6DG015800 Rh6DG015900
rosa_wichuraiana	Rw6G001820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AciI	CCGC	1 cut(s)	133
AdeI	CACNNNGTG	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	478, 503
AluBI	AGCT	4 cut(s)	140, 233, 314, 485
AluI	AGCT	4 cut(s)	140, 233, 314, 485
Alw21I	GWGCWC	1 cut(s)	325
Alw44I	GTGCAC	1 cut(s)	321
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	482, 485
AseI	ATTAAT	1 cut(s)	465
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	325
BarI	GAAGNNNNNNTAC	2 cut(s)	237, 269
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	472, 494
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	93
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	454
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	134, 483, 486
BlsI	GCNGC	3 cut(s)	135, 484, 487
Bme1390I	CCNGG	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	472, 494
BsgI	GTGCAG	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	93, 198
BslFI	GGGAC	2 cut(s)	75, 419
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	2 cut(s)	75, 419
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	458
BspMI	ACCTGC	1 cut(s)	52
BssMI	GATC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	105, 374
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 329, 491
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	454
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	472, 494
BtsIMutI	CAGTG	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	138
CseI	GACGC	1 cut(s)	169
CviAII	CATG	2 cut(s)	148, 431
CviJI	RGCY	7 cut(s)	36, 140, 233, 314, 474, 485, 494
CviKI_1	RGCY	7 cut(s)	36, 140, 233, 314, 474, 485, 494
DdeI	CTNAG	2 cut(s)	105, 374
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
DraIII	CACNNNGTG	1 cut(s)	108
FaeI	CATG	2 cut(s)	151, 434
FaqI	GGGAC	2 cut(s)	75, 419
FatI	CATG	2 cut(s)	147, 430
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	134, 483, 486
Fsp4HI	GCNGC	3 cut(s)	134, 483, 486
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	3 cut(s)	134, 483, 486
HapII	CCGG	2 cut(s)	93, 198
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	151, 434
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	2 cut(s)	93, 198
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	2 cut(s)	260, 387
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	472
HpyCH4V	TGCA	6 cut(s)	47, 100, 147, 323, 456, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 329, 491
HpyF3I	CTNAG	2 cut(s)	105, 374
Hsp92II	CATG	2 cut(s)	151, 434
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	7 cut(s)	57, 105, 106, 211, 263, 372, 504
Lsp1109I	GCAGC	2 cut(s)	472, 494
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	2 cut(s)	248, 419
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	334, 412
MnlI	CCTC	2 cut(s)	123, 177
MseI	TTAA	5 cut(s)	26, 423, 465, 537, 550
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	2 cut(s)	93, 198
MspR9I	CCNGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	320, 329, 491
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	2 cut(s)	151, 434
NmuCI	GTSAC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	135, 484, 487
PshBI	ATTAAT	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	5 cut(s)	26, 423, 465, 537, 550
SatI	GCNGC	3 cut(s)	134, 483, 486
Sau3AI	GATC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	7 cut(s)	46, 59, 142, 169, 235, 316, 487
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	334, 412
SsiI	CCGC	1 cut(s)	133
SspI	AATATT	2 cut(s)	382, 547
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	91
TasI	AATT	2 cut(s)	334, 412
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	5 cut(s)	26, 423, 465, 537, 550
Tru9I	TTAA	5 cut(s)	26, 423, 465, 537, 550
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	482, 485
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	197, 419, 451
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	113
VneI	GTGCAC	1 cut(s)	321
VspI	ATTAAT	1 cut(s)	465
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.