Rmu_sc0000638.1_g000001

Endo-1,4-beta-xylanase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000638.1
Physical Location & Seq
Forward (+)
1622 .. 5508
3887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000638.1_g000001.1.cds

Sequence Viewer

Length: 1722 bp
atgggaaacactactctcaccttcgtcaggctgcagcttcttatgttcattctcctcatgggctcaccctttgttttttcctttgatggtccactatatgactctactgcttacactgagtgtaaaaggcagccagagaagcctctatatggtggagggatcattgttgatgagccttcagctgttgtagacatagacaatggggacgtttattcaccggcattcctactccaaaatctcaccggcaacggcaccatttacagcttctccagttgggtgaagatagggggtgcaggttcagcactgatacaggcaagtctaaaggcagaagatgaatcatacaattgtataggaactgttttggccaagcggggatgctggtcattcctcaagggtggctttgtcctaaattcaccacctaatttctctatactattcttccagaatacggatggcagagatgtcggcctagcaattgcaagtgcttctttgcagccatttagtgctcagcaatggaatacatatcaccaatatatgatcaacactaaaaggaagcgtgccgtgacggtccatgtctcaaatggacaaggaaaggggctgcaaggagctgcaattaccgtagagcaagtctccaaagatttcccatttggatctgcaatttcaaagaccattctaggcaatttagcctaccagaattggtttgttgagagattcaatgctgcggtgttcgagaatgaacttaagtggtatgcaactgaacctaatcaaggcaatgtcacttacactatagcagatcaaatgttgcaatttgttcgagctcaccaaatcactgctagagggcacaatatattctgggaagatcccaaatacacaccaccttgggttcgatacctcacagctgatcagctacaatcagctgtcaactctcggatacaaagcctaatgagaaaatacaaagaagagttcattcattgggatgtcagcaatgaaatgcttcactttgatttctatgagaaacaacttggccccaatgccaccttggatttctttcagacggcacacaaatctgatcctttggcaaccctttttatgaatgactttaatgtggtggagacttgcactgatgtgaattccacagttgatacctatgtttcaaggctgagagaacttcaacaaggtggagtatcaatggatgggattggactagagggtcattttacaataccaaacccccctctaatgagagctattatagacaagttggctaccctaggccttcctatttggctcacagaggttgatatcagcaatactctagacaaagaaacacaggccatttatctagagcaagtattaagagaaggtttctcacatccatctgtaaatgggataatgctctggagtgctctacatcctaacgggtgctacgagatgtgcctgacggataataaccttaaaaatctaccagctggtgatgtggtggacaagctcttgaaagaatggcaaaccgggaagatagaggctcagatcgatgagcatggatcacatagctttttcgggttcttgggtgagtacagggcatgccagcaccgtggggtgcagtcgtcgggggagtcccttgacctgacttcttcttcaagcgttgtggacgaggagagcaccaacctcgccacaaggttcttctctagccttccgacgaaggacttcttgccttacggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

573

Amino Acids

63.98

Weight (kDa)

5.18

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1209
Acc36I ACCTGC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 189
AciI CCGC 2 cut(s) 370, 722
AclWI GGATC 5 cut(s) 167, 658, 854, 1064, 1549
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 2 cut(s) 409, 1129
AcuI CTGAAG 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 120
AfaI GTAC 1 cut(s) 1574
AfiI CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 6 cut(s) 663, 715, 1155, 1172, 1495, 1638
AleI CACNNNNGTG 1 cut(s) 1124
Alw21I GWGCWC 4 cut(s) 508, 820, 1408, 1661
Alw26I GTCTC 3 cut(s) 580, 634, 1106
AlwI GGATC 5 cut(s) 167, 658, 854, 1064, 1549
AoxI GGCC 5 cut(s) 363, 466, 1024, 1273, 1332
ApeKI GCWGC 7 cut(s) 31, 34, 130, 493, 598, 608, 719
ApoI RAATTY 2 cut(s) 409, 1129
Asp700I GAANNNNTTC 2 cut(s) 993, 1703
AspA2I CCTAGG 1 cut(s) 1270
AspS9I GGNCC 3 cut(s) 89, 568, 1025
AsuC2I CCSGG 1 cut(s) 1510
AvaII GGWCC 2 cut(s) 89, 568
AvrII CCTAGG 1 cut(s) 1270
BaeGI GKGCMC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 1134, 1167
BalI TGGCCA 1 cut(s) 365
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 2 cut(s) 65, 820
Bbv12I GWGCWC 4 cut(s) 508, 820, 1408, 1661
BbvI GCAGC 7 cut(s) 18, 46, 142, 505, 585, 595, 706
BccI CCATC 4 cut(s) 80, 446, 1187, 1384
BceAI ACGGC 3 cut(s) 265, 545, 1071
BcgI CGANNNNNNTGC 6 cut(s) 445, 479, 794, 828, 1648, 1682
BciVI GTATCC 1 cut(s) 924
BclI TGATCA 2 cut(s) 537, 901
BcnI CCSGG 1 cut(s) 1510
BcoDI GTCTC 3 cut(s) 580, 634, 1106
BfaI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1686
BfmI CTRYAG 2 cut(s) 32, 786
BfrI CTTAAG 1 cut(s) 740
BfuAI ACCTGC 1 cut(s) 284
BfuI GTATCC 1 cut(s) 924
BisI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
BlnI CCTAGG 1 cut(s) 1270
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 7 cut(s) 33, 36, 132, 495, 600, 610, 721
Bme1390I CCNGG 1 cut(s) 1510
Bme18I GGWCC 2 cut(s) 89, 568
BmgT120I GGNCC 3 cut(s) 89, 568, 1025
BmiI GGNNCC 2 cut(s) 253, 1027
BmrFI CCNGG 1 cut(s) 1510
BmsI GCATC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 614, 646
BpmI CTGGAG 2 cut(s) 253, 1420
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 1510
Bsa29I ATCGAT 1 cut(s) 1530
BsaJI CCNNGG 4 cut(s) 878, 1038, 1270, 1591
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
Bse118I RCCGGY 2 cut(s) 217, 242
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 3 cut(s) 518, 778, 991
BseCI ATCGAT 1 cut(s) 1530
BseDI CCNNGG 4 cut(s) 878, 1038, 1270, 1591
BseGI GGATG 6 cut(s) 380, 457, 982, 1198, 1372, 1411
BseLI CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
BseMI GCAATG 3 cut(s) 518, 778, 991
BseMII CTCAG 4 cut(s) 108, 521, 1151, 1538
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 44, 1667
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 7 cut(s) 18, 46, 142, 505, 585, 595, 706
BsgI GTGCAG 2 cut(s) 312, 1619
BshFI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
BshNI GGYRCC 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 1530
BsiHKAI GWGCWC 4 cut(s) 508, 820, 1408, 1661
BsiSI CCGG 3 cut(s) 218, 243, 1509
BslFI GGGAC 2 cut(s) 218, 1600
BslI CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
BsmAI GTCTC 3 cut(s) 580, 634, 1106
BsmFI GGGAC 2 cut(s) 218, 1600
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
Bsp1286I GDGCHC 6 cut(s) 65, 508, 820, 843, 1408, 1661
Bsp143I GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 2 cut(s) 370, 722
BspANI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
BspCNI CTCAG 4 cut(s) 109, 520, 1152, 1537
BspDI ATCGAT 1 cut(s) 1530
BspLI GGNNCC 2 cut(s) 253, 1027
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 5 cut(s) 167, 658, 854, 1064, 1549
BspT107I GGYRCC 1 cut(s) 251
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 3 cut(s) 518, 778, 991
BsrFI RCCGGY 2 cut(s) 217, 242
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 2 cut(s) 217, 242
BssECI CCNNGG 4 cut(s) 878, 1038, 1270, 1591
BssMI GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
BssT1I CCWWGG 3 cut(s) 878, 1038, 1270
Bst4CI ACNGT 5 cut(s) 358, 568, 619, 1138, 1592
Bst6I CTCTTC 1 cut(s) 954
BstAFI CTTAAG 1 cut(s) 740
BstC8I GCNNGC 3 cut(s) 558, 1582, 1586
BstDEI CTNAG 4 cut(s) 117, 507, 1160, 1524
BstDSI CCRYGG 1 cut(s) 1591
BstENI CCTNNNNNAGG 2 cut(s) 25, 765
BstF5I GGATG 6 cut(s) 380, 457, 982, 1198, 1372, 1411
BstKTI GATC 9 cut(s) 162, 540, 653, 796, 862, 904, 1072, 1530, 1544
BstMAI GTCTC 3 cut(s) 580, 634, 1106
BstMBI GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
BstMWI GCNNNNNNNGC 2 cut(s) 139, 299
BstNSI RCATGY 1 cut(s) 1584
BstSCI CCNGG 1 cut(s) 1508
BstSFI CTRYAG 2 cut(s) 32, 786
BstSLI GKGCMC 1 cut(s) 843
BstV1I GCAGC 7 cut(s) 18, 46, 142, 505, 585, 595, 706
BstX2I RGATCY 2 cut(s) 650, 859
BstXI CCANNNNNNTGG 1 cut(s) 1592
BstYI RGATCY 2 cut(s) 650, 859
Bsu15I ATCGAT 1 cut(s) 1530
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
BsuTUI ATCGAT 1 cut(s) 1530
BtgI CCRYGG 1 cut(s) 1591
BtsCI GGATG 6 cut(s) 380, 457, 982, 1198, 1372, 1411
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 4 cut(s) 114, 302, 828, 1119
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 3 cut(s) 558, 1582, 1586
Cfr10I RCCGGY 2 cut(s) 217, 242
Cfr13I GGNCC 3 cut(s) 89, 568, 1025
ClaI ATCGAT 1 cut(s) 1530
Csp6I GTAC 1 cut(s) 1573
CspCI CAANNNNNGTGG 2 cut(s) 1626, 1661
CviAII CATG 4 cut(s) 58, 572, 1538, 1581
CviQI GTAC 1 cut(s) 1573
DdeI CTNAG 4 cut(s) 117, 507, 1160, 1524
DpnI GATC 9 cut(s) 161, 539, 652, 795, 861, 903, 1071, 1529, 1543
DpnII GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
DraIII CACNNNGTG 1 cut(s) 120
DrdI GACNNNNNNGTC 1 cut(s) 1209
DseDI GACNNNNNNGTC 1 cut(s) 1209
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
Ecl136II GAGCTC 1 cut(s) 818
Eco130I CCWWGG 3 cut(s) 878, 1038, 1270
Eco147I AGGCCT 1 cut(s) 1275
Eco24I GRGCYC 2 cut(s) 65, 820
Eco32I GATATC 1 cut(s) 1303
Eco47I GGWCC 2 cut(s) 89, 568
Eco53kI GAGCTC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 818
EcoNI CCTNNNNNAGG 2 cut(s) 25, 765
EcoRI GAATTC 1 cut(s) 1129
EcoRV GATATC 1 cut(s) 1303
EcoT14I CCWWGG 3 cut(s) 878, 1038, 1270
EcoT38I GRGCYC 2 cut(s) 65, 820
ErhI CCWWGG 3 cut(s) 878, 1038, 1270
FaeI CATG 4 cut(s) 61, 575, 1541, 1584
FalI AAGNNNNNCTT 5 cut(s) 383, 415, 472, 504, 1691
FaqI GGGAC 2 cut(s) 218, 1600
FatI CATG 4 cut(s) 57, 571, 1537, 1580
FauI CCCGC 1 cut(s) 363
FbaI TGATCA 2 cut(s) 537, 901
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
FokI GGATG 6 cut(s) 387, 464, 989, 1205, 1359, 1398
FriOI GRGCYC 2 cut(s) 65, 820
Fsp4HI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
FspBI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1686
GluI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
GsuI CTGGAG 2 cut(s) 253, 1420
HaeIII GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
HapII CCGG 3 cut(s) 218, 243, 1509
Hin1II CATG 4 cut(s) 61, 575, 1541, 1584
HincII GTYRAC 1 cut(s) 922
HindII GTYRAC 1 cut(s) 922
HinfI GANTC 4 cut(s) 101, 335, 711, 1613
HpaII CCGG 3 cut(s) 218, 243, 1509
Hpy166II GTNNAC 5 cut(s) 92, 190, 922, 1483, 1648
Hpy188I TCNGA 5 cut(s) 930, 1053, 1069, 1527, 1695
Hpy188III TCNNGA 6 cut(s) 442, 730, 1316, 1343, 1399, 1492
Hpy8I GTNNAC 5 cut(s) 92, 190, 922, 1483, 1648
Hpy99I CGWCG 2 cut(s) 1609, 1699
HpyAV CCTTC 6 cut(s) 31, 186, 1286, 1355, 1693, 1700
HpyCH4III ACNGT 5 cut(s) 358, 568, 619, 1138, 1592
HpyCH4IV ACGT 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 299
HpyF3I CTNAG 4 cut(s) 117, 507, 1160, 1524
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 4 cut(s) 61, 575, 1541, 1584
Ksp22I TGATCA 2 cut(s) 537, 901
Kzo9I GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 7 cut(s) 18, 46, 142, 505, 585, 595, 706
LweI GCATC 1 cut(s) 365
MaeI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1686
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 562, 775
MalI GATC 9 cut(s) 161, 539, 652, 795, 861, 903, 1071, 1529, 1543
MboI GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
MboII GAAGA 9 cut(s) 292, 341, 430, 869, 971, 1525, 1623, 1626, 1672
MfeI CAATTG 2 cut(s) 343, 474
MflI RGATCY 2 cut(s) 650, 859
MhlI GDGCHC 6 cut(s) 65, 508, 820, 843, 1408, 1661
MlsI TGGCCA 1 cut(s) 365
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 2 cut(s) 95, 1622
MmeI TCCRAC 1 cut(s) 1718
Mox20I TGGCCA 1 cut(s) 365
MroXI GAANNNNTTC 2 cut(s) 993, 1703
MscI TGGCCA 1 cut(s) 365
MseI TTAA 4 cut(s) 741, 1101, 1355, 1455
MslI CAYNNNNRTG 2 cut(s) 975, 1124
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 4 cut(s) 182, 899, 917, 1469
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 3 cut(s) 218, 243, 1509
MspR9I CCNGG 1 cut(s) 1510
MunI CAATTG 2 cut(s) 343, 474
Mva1269I GAATGC 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 139, 299
NciI CCSGG 1 cut(s) 1510
NdeII GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
NlaIII CATG 4 cut(s) 61, 575, 1541, 1584
NlaIV GGNNCC 2 cut(s) 253, 1027
NmuCI GTSAC 2 cut(s) 562, 775
NspI RCATGY 1 cut(s) 1584
OliI CACNNNNGTG 1 cut(s) 1124
PaeI GCATGC 1 cut(s) 1584
PceI AGGCCT 1 cut(s) 1275
PcsI WCGNNNNNNNCGW 1 cut(s) 1425
PctI GAATGC 1 cut(s) 221
PdmI GAANNNNTTC 2 cut(s) 993, 1703
PfeI GAWTC 2 cut(s) 335, 711
PkrI GCNGC 7 cut(s) 33, 36, 132, 495, 600, 610, 721
PleI GAGTC 2 cut(s) 95, 1621
PpsI GAGTC 2 cut(s) 95, 1621
Psp124BI GAGCTC 1 cut(s) 820
PspN4I GGNNCC 2 cut(s) 253, 1027
PspPI GGNCC 3 cut(s) 89, 568, 1025
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 2 cut(s) 650, 859
PvuII CAGCTG 4 cut(s) 182, 899, 917, 1469
RsaI GTAC 1 cut(s) 1574
RsaNI GTAC 1 cut(s) 1573
RseI CAYNNNNRTG 2 cut(s) 975, 1124
SacI GAGCTC 1 cut(s) 820
SaqAI TTAA 4 cut(s) 741, 1101, 1355, 1455
SatI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
Sau3AI GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
Sau96I GGNCC 3 cut(s) 89, 568, 1025
SchI GAGTC 2 cut(s) 95, 1622
ScrFI CCNGG 1 cut(s) 1510
SduI GDGCHC 6 cut(s) 65, 508, 820, 843, 1408, 1661
SfaNI GCATC 1 cut(s) 365
SfcI CTRYAG 2 cut(s) 32, 786
SinI GGWCC 2 cut(s) 89, 568
SmiMI CAYNNNNRTG 2 cut(s) 975, 1124
SmlI CTYRAG 2 cut(s) 389, 740
SmoI CTYRAG 2 cut(s) 389, 740
SphI GCATGC 1 cut(s) 1584
SseBI AGGCCT 1 cut(s) 1275
SsiI CCGC 2 cut(s) 370, 722
SspMI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1686
SstI GAGCTC 1 cut(s) 820
StuI AGGCCT 1 cut(s) 1275
StyD4I CCNGG 1 cut(s) 1508
StyI CCWWGG 3 cut(s) 878, 1038, 1270
TaaI ACNGT 5 cut(s) 358, 568, 619, 1138, 1592
TaiI ACGT 1 cut(s) 210
TaqI TCGA 4 cut(s) 729, 814, 886, 1530
TatI WGTACW 1 cut(s) 1572
TfiI GAWTC 2 cut(s) 335, 711
Tru1I TTAA 4 cut(s) 741, 1101, 1355, 1455
Tru9I TTAA 4 cut(s) 741, 1101, 1355, 1455
TscAI CASTG 4 cut(s) 121, 309, 835, 1126
TseFI GTSAC 2 cut(s) 562, 775
TseI GCWGC 7 cut(s) 31, 34, 130, 493, 598, 608, 719
Tsp45I GTSAC 2 cut(s) 562, 775
TspDTI ATGAA 7 cut(s) 37, 348, 750, 955, 959, 1002, 1106
TspGWI ACGGA 2 cut(s) 464, 1457
TspRI CASTG 4 cut(s) 121, 309, 835, 1126
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 89, 568
XagI CCTNNNNNAGG 2 cut(s) 25, 765
XapI RAATTY 2 cut(s) 409, 1129
XbaI TCTAGA 2 cut(s) 1315, 1342
XceI RCATGY 1 cut(s) 1584
XcmI CCANNNNNNNNNTGG 3 cut(s) 449, 578, 1036
XmaJI CCTAGG 1 cut(s) 1270
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 2 cut(s) 993, 1703
XspI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.