Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8265637.1

Orthogroup ID

OG0004763

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 683

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8265637.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgattgatcttcacattcagaattggtttgttgagagattcaatgctgcggtgttcgagaatgaactcaagtggtatgcaacagaacctaatcaaggcaatgtcacttacactatagcagatcaaatgttgcaatttgttcgagctcaccaaatcactgctagagggcacaatatattctgggaagatcccaaatacacaccaccttgggttcgatacctcacagctgatcagctacaatcagctgtcaactctcggatacaaagcctaatgagaaaatacaaagaagagttcattcattgggatgtcagcaatgaaatgcttcactttgatttctatgagaaacaacttggccccaatgccaccttggatttctttcagacggcacacaaatctgatcctttggcaaccctttttatgaatgactttaatgtggtggagacttgcactgatgtgaattccacagttgatacctatgtttcaaggctgagagaacttcaacaaggtggagtatcaatggatgggattggactagagggtcattttacaataccaaacccccctctaatgagagctattatagacaagttggctaccctaggccttcctatttggctcacagaggttgatatcagcaatactctagacaaagaaacacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_10

Protein Analysis

220

Amino Acids

25.53

Weight (kDa)

4.9

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38300 AT4G38650
fragaria_vesca	FvH4_2g01510 FvH4_2g01510 FvH4_2g01510 FvH4_2g01510
malus_domestica	MD05G1119000.v1.1 MD10G1122000.v1.1
prunus_persica	Prupe.8G163400_v2.0.a1 Prupe.8G163400_v2.0.a1
pyrus_communis	pycom05g11310
rosa_chinensis	RchiOBHm_Chr6g0244121 RchiOBHm_Chr6g0244171
rosa_laevigata	RLG00000015377 RLG00000015378 RLG00000015379
rosa_multiflora	Rmu_co8265637.1_g000001 Rmu_sc0000638.1_g000001 Rmu_sc0000638.1_g000015 Rmu_sc0001455.1_g000031
rosa_roxburghii	Rroxscaffold_7G00216050
rosa_rugosa	Rorug05G0507600 Rorug05G0507700
rosa_samantha	Rh6AG022100 Rh6BG017800 Rh6CG014600 Rh6CG014700 Rh6CG014800 Rh6DG015800 Rh6DG015900
rosa_wichuraiana	Rw6G001820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	537
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	182, 392
AcsI	RAATTY	1 cut(s)	457
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	43, 483, 500
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	5 cut(s)	146, 227, 235, 245, 575
AluI	AGCT	5 cut(s)	146, 227, 235, 245, 575
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	2 cut(s)	182, 392
AoxI	GGCC	2 cut(s)	352, 601
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	321
AspA2I	CCTAGG	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	140
AvrII	CCTAGG	1 cut(s)	598
BaeGI	GKGCMC	1 cut(s)	171
BaeI	ACNNNNGTAYC	2 cut(s)	462, 495
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	1 cut(s)	399
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciVI	GTATCC	1 cut(s)	252
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	4 cut(s)	162, 533, 599, 644
BfmI	CTRYAG	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	252
BisI	GCNGC	1 cut(s)	48
BlnI	CCTAGG	1 cut(s)	598
BlsI	GCNGC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	206, 366, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse3DI	GCAATG	2 cut(s)	106, 319
BseDI	CCNNGG	3 cut(s)	206, 366, 598
BseGI	GGATG	2 cut(s)	310, 526
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	2 cut(s)	106, 319
BseMII	CTCAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	2 cut(s)	354, 603
BsiHKAI	GWGCWC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	354, 603
Bsp1286I	GDGCHC	2 cut(s)	148, 171
Bsp143I	GATC	5 cut(s)	7, 121, 187, 229, 397
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	2 cut(s)	354, 603
BspCNI	CTCAG	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	182, 392
BsrDI	GCAATG	2 cut(s)	106, 319
BssECI	CCNNGG	3 cut(s)	206, 366, 598
BssMI	GATC	5 cut(s)	7, 121, 187, 229, 397
BssT1I	CCWWGG	3 cut(s)	206, 366, 598
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	488
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	310, 526
BstKTI	GATC	5 cut(s)	10, 124, 190, 232, 400
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	5 cut(s)	7, 121, 187, 229, 397
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	354, 603
BtsCI	GGATG	2 cut(s)	310, 526
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 447
Cfr13I	GGNCC	1 cut(s)	353
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	5 cut(s)	9, 123, 189, 231, 399
DpnII	GATC	5 cut(s)	7, 121, 187, 229, 397
DrdI	GACNNNNNNGTC	1 cut(s)	537
DseDI	GACNNNNNNGTC	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	3 cut(s)	206, 366, 598
Eco147I	AGGCCT	1 cut(s)	603
Eco24I	GRGCYC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	3 cut(s)	206, 366, 598
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	3 cut(s)	206, 366, 598
FaiI	YATR	7 cut(s)	78, 116, 176, 339, 419, 477, 581
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	2 cut(s)	317, 533
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	4 cut(s)	162, 533, 599, 644
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	354, 603
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	39
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	21, 258, 381, 397
Hpy188III	TCNNGA	2 cut(s)	58, 644
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	614
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	80, 133, 447
HpyF3I	CTNAG	1 cut(s)	488
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	7, 121, 187, 229, 397
LpnPI	CCDG	1 cut(s)	166
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	4 cut(s)	162, 533, 599, 644
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	5 cut(s)	9, 123, 189, 231, 399
MboI	GATC	5 cut(s)	7, 121, 187, 229, 397
MboII	GAAGA	2 cut(s)	197, 299
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	148, 171
MluCI	AATT	3 cut(s)	22, 134, 457
MnlI	CCTC	5 cut(s)	158, 230, 529, 573, 616
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	2 cut(s)	303, 452
MspA1I	CMGCKG	2 cut(s)	227, 245
NdeII	GATC	5 cut(s)	7, 121, 187, 229, 397
NlaIV	GGNNCC	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	452
PceI	AGGCCT	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	2 cut(s)	227, 245
RseI	CAYNNNNRTG	2 cut(s)	303, 452
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	5 cut(s)	7, 121, 187, 229, 397
Sau96I	GGNCC	1 cut(s)	353
SduI	GDGCHC	2 cut(s)	148, 171
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	303, 452
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	22, 134, 457
SseBI	AGGCCT	1 cut(s)	603
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	4 cut(s)	162, 533, 599, 644
SstI	GAGCTC	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	603
StyI	CCWWGG	3 cut(s)	206, 366, 598
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	57, 142, 214
TasI	AATT	3 cut(s)	22, 134, 457
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	163, 454
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	5 cut(s)	78, 283, 287, 330, 434
TspRI	CASTG	2 cut(s)	163, 454
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	457
XbaI	TCTAGA	1 cut(s)	643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmaJI	CCTAGG	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	4 cut(s)	162, 533, 599, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.