Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004763

Physical Location & Seq

Genomic Coordinates Reverse (-)

65248899 .. 65287606

Gene Structure 38708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGTCCACCATATGACTACTGCTTACACTGAGATAAGGAGTGCAGGTTCAGCTCTCATACAGGCAAGTCTAAGGGCAGAAGATGAAACATACGATTGTATAGGAACTGTTTTGGCCAAGCGAGGATGCTGGTCATTCCTCAAAGGTGGCTTTGTCCTAAATGCACCATCTAATCTGTCTATACTATTCTTCCAGAATACAGATGGCGGAGATGTCAGCCTAGCAGTTGTAAGCACTTTTTTGCAGCCATTTAGTGTTCATCAATGGAATACATATCAGCAGTATATGATCAACACTCAACTCAACTTCTATACTTTTCATACAAGGAAGCGTGCTGTGACAGTCCATGTCTCAAATGAACAAGGAAAGGGGTTGCAAGGAGCTGCAATTATCGTAGAGCAAGTCTCCAAAGATTTCCCATTTGGATCTGCAATTTCAAAGACCATTCTAGGCGATTTTCCCTACCAGAGATTCAATGCTGCGGTGTTTGAGAACGAGCTCAAGTGGCATGCAATGGAACCTAATCAAGGCAATGTCACTTATACTATAGCAGATCAAATGTTGCAATTCGTTCGAGCTCACCAAATCACTCCTAGAGGGCACCATATATTCTGGGAAGATCCCAAATACACACCACTAGAATCAGCTGTCAACTCTTGGATACAAAGCCTAATGAGCAAATACAAAGAAGAGTTCATTCATTGGGATGTCAGCAATGAAATGCTTTACTTTGATTTCTATGAGAAACAACTTGCACACAAATCCGATCTTTTGGCAACCCTTTTTATGAATGACTTTAATGTGGTGGAGAATTGCACTGATGTGAACTCCACAGTTGATACCTATGTCTCAAGGCAGTTGAGAGAACTACAAGAAAGGGGAGTATCAATGGATGGGATTGGACTAGAGGGTCATTTTACAATACTAAACCCTCCTCTAATGAGAGCTAATATAGACAAGTTGGCTACACTAGGCCTTCCTATTTGGCTCACAAAGGTTGATGTCATTTACCTAGAGCAAGTATTAAGAGAAGGTTTCTCACATCCATCTGTAAATGGGATAATGCTCTGGAGTGTTCTACATCCTAACGGGTGCTACCAGATGTGCCTGATGGATAATAACCTTAAAAATCTACCAGCTGGTGATGTGTTGGACAAGCTCTTGAAAGAATGGCAAACCGGGAAGATAGAGGCTCAGATCAATGAGCATGGATCACATAGCTTTTTCGGGTTCTTGGGTGAGTACGTCGTTAGTGTAAAGCATGGAAATAGGACCGCAAACTCAACATTCTCACTGTGTCAAGGGGAAGAAAGTAGACATGTAAGCATTCAACTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_10

Protein Analysis

447

Amino Acids

50.69

Weight (kDa)

5.82

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	136 - 242	4.8e-17	Glycosyl hydrolase family 10
Glyco_hydro_10	PF00331	250 - 337	1.7e-09	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38300 AT4G38650
fragaria_vesca	FvH4_2g01510 FvH4_2g01510 FvH4_2g01510 FvH4_2g01510
malus_domestica	MD05G1119000.v1.1 MD10G1122000.v1.1
prunus_persica	Prupe.8G163400_v2.0.a1 Prupe.8G163400_v2.0.a1
pyrus_communis	pycom05g11310
rosa_chinensis	RchiOBHm_Chr6g0244121 RchiOBHm_Chr6g0244171
rosa_laevigata	RLG00000015377 RLG00000015378 RLG00000015379
rosa_multiflora	Rmu_co8265637.1_g000001 Rmu_sc0000638.1_g000001 Rmu_sc0000638.1_g000015 Rmu_sc0001455.1_g000031
rosa_roxburghii	Rroxscaffold_7G00216050
rosa_rugosa	Rorug05G0507600 Rorug05G0507700
rosa_samantha	Rh6AG022100 Rh6BG017800 Rh6CG014600 Rh6CG014700 Rh6CG014800 Rh6DG015800 Rh6DG015900
rosa_wichuraiana	Rw6G001820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	909
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	600
AccI	GTMKAC	1 cut(s)	1315
AciI	CCGC	3 cut(s)	207, 482, 1275
AclWI	GGATC	3 cut(s)	433, 614, 1219
AcoI	YGGCCR	1 cut(s)	114
AfaI	GTAC	1 cut(s)	1244
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	1318
AgsI	TTSAA	4 cut(s)	438, 475, 1165, 1331
AleI	CACNNNNGTG	1 cut(s)	821
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	9 cut(s)	53, 383, 499, 578, 647, 947, 1139, 1159, 1221
AluI	AGCT	9 cut(s)	53, 383, 499, 578, 647, 947, 1139, 1159, 1221
Alw21I	GWGCWC	2 cut(s)	501, 580
Alw26I	GTCTC	3 cut(s)	355, 409, 853
AlwI	GGATC	3 cut(s)	433, 614, 1219
AoxI	GGCC	2 cut(s)	114, 973
ApeKI	GCWGC	3 cut(s)	244, 383, 479
AspS9I	GGNCC	2 cut(s)	4, 1272
AsuC2I	CCSGG	1 cut(s)	1180
AsuHPI	GGTGA	3 cut(s)	572, 1154, 1250
AvaII	GGWCC	2 cut(s)	4, 1272
BaeGI	GKGCMC	1 cut(s)	603
BaeI	ACNNNNGTAYC	2 cut(s)	831, 864
BalI	TGGCCA	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	2 cut(s)	501, 580
Bbv12I	GWGCWC	2 cut(s)	501, 580
BbvI	GCAGC	3 cut(s)	256, 370, 466
BccI	CCATC	5 cut(s)	175, 197, 887, 1054, 1105
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciVI	GTATCC	1 cut(s)	654
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	1180
BcoDI	GTCTC	3 cut(s)	355, 409, 853
BfaI	CTAG	8 cut(s)	221, 449, 594, 638, 905, 971, 1013, 1339
BfmI	CTRYAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	654
BisI	GCNGC	3 cut(s)	245, 384, 480
BlsI	GCNGC	3 cut(s)	246, 385, 481
Bme1390I	CCNGG	1 cut(s)	1180
Bme18I	GGWCC	2 cut(s)	4, 1272
BmgT120I	GGNCC	2 cut(s)	4, 1272
BmiI	GGNNCC	2 cut(s)	519, 602
BmrFI	CCNGG	1 cut(s)	1180
BmsI	GCATC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	1 cut(s)	1090
BpuEI	CTTGAG	2 cut(s)	485, 835
BpuMI	CCSGG	1 cut(s)	1180
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse3DI	GCAATG	3 cut(s)	519, 538, 721
BseGI	GGATG	5 cut(s)	131, 712, 898, 1042, 1081
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	3 cut(s)	519, 538, 721
BseMII	CTCAG	2 cut(s)	21, 1208
BseRI	GAGGAG	1 cut(s)	924
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	3 cut(s)	256, 370, 466
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	116, 975
BshNI	GGYRCC	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	501, 580
BsiSI	CCGG	1 cut(s)	1179
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	3 cut(s)	355, 409, 853
BsmI	GAATGC	1 cut(s)	1326
BsnI	GGCC	2 cut(s)	116, 975
Bsp1286I	GDGCHC	3 cut(s)	501, 580, 603
Bsp143I	GATC	7 cut(s)	288, 425, 553, 619, 766, 1197, 1211
BspACI	CCGC	3 cut(s)	207, 482, 1275
BspANI	GGCC	2 cut(s)	116, 975
BspCNI	CTCAG	2 cut(s)	22, 1207
BspLI	GGNNCC	2 cut(s)	519, 602
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	3 cut(s)	433, 614, 1219
BspT107I	GGYRCC	1 cut(s)	600
BsrDI	GCAATG	3 cut(s)	519, 538, 721
BssMI	GATC	7 cut(s)	288, 425, 553, 619, 766, 1197, 1211
Bst4CI	ACNGT	4 cut(s)	109, 343, 835, 1296
Bst6I	CTCTTC	1 cut(s)	684
BstC8I	GCNNGC	2 cut(s)	333, 510
BstDEI	CTNAG	3 cut(s)	30, 71, 1194
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	5 cut(s)	131, 712, 898, 1042, 1081
BstKTI	GATC	7 cut(s)	291, 428, 556, 622, 769, 1200, 1214
BstMAI	GTCTC	3 cut(s)	355, 409, 853
BstMBI	GATC	7 cut(s)	288, 425, 553, 619, 766, 1197, 1211
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 505, 675
BstNSI	RCATGY	2 cut(s)	512, 1322
BstSCI	CCNGG	1 cut(s)	1178
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	603
BstV1I	GCAGC	3 cut(s)	256, 370, 466
BstX2I	RGATCY	2 cut(s)	425, 619
BstYI	RGATCY	2 cut(s)	425, 619
BsuI	GTATCC	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	116, 975
BtsCI	GGATG	5 cut(s)	131, 712, 898, 1042, 1081
BtsIMutI	CAGTG	3 cut(s)	27, 816, 1292
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	333, 510
Cfr13I	GGNCC	2 cut(s)	4, 1272
Csp6I	GTAC	1 cut(s)	1243
CviAII	CATG	5 cut(s)	347, 509, 1208, 1262, 1319
CviQI	GTAC	1 cut(s)	1243
DdeI	CTNAG	3 cut(s)	30, 71, 1194
DpnI	GATC	7 cut(s)	290, 427, 555, 621, 768, 1199, 1213
DpnII	GATC	7 cut(s)	288, 425, 553, 619, 766, 1197, 1211
DrdI	GACNNNNNNGTC	1 cut(s)	909
DseDI	GACNNNNNNGTC	1 cut(s)	909
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
EciI	GGCGGA	1 cut(s)	222
Ecl136II	GAGCTC	2 cut(s)	499, 578
Eco147I	AGGCCT	1 cut(s)	975
Eco24I	GRGCYC	2 cut(s)	501, 580
Eco47I	GGWCC	2 cut(s)	4, 1272
Eco53kI	GAGCTC	2 cut(s)	499, 578
EcoICRI	GAGCTC	2 cut(s)	499, 578
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoT38I	GRGCYC	2 cut(s)	501, 580
FaeI	CATG	5 cut(s)	350, 512, 1211, 1265, 1322
FatI	CATG	5 cut(s)	346, 508, 1207, 1261, 1318
FauNDI	CATATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	1315
Fnu4HI	GCNGC	3 cut(s)	245, 384, 480
FokI	GGATG	5 cut(s)	138, 719, 905, 1029, 1068
FriOI	GRGCYC	2 cut(s)	501, 580
Fsp4HI	GCNGC	3 cut(s)	245, 384, 480
FspBI	CTAG	8 cut(s)	221, 449, 594, 638, 905, 971, 1013, 1339
GluI	GCNGC	3 cut(s)	245, 384, 480
GsuI	CTGGAG	1 cut(s)	1090
HaeIII	GGCC	2 cut(s)	116, 975
HapII	CCGG	1 cut(s)	1179
Hin1II	CATG	5 cut(s)	350, 512, 1211, 1265, 1322
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	2 cut(s)	471, 641
HpaII	CCGG	1 cut(s)	1179
HphI	GGTGA	3 cut(s)	572, 1154, 1250
Hpy166II	GTNNAC	4 cut(s)	7, 652, 826, 1316
Hpy188I	TCNGA	2 cut(s)	766, 1197
Hpy188III	TCNNGA	3 cut(s)	193, 1069, 1162
Hpy8I	GTNNAC	4 cut(s)	7, 652, 826, 1316
Hpy99I	CGWCG	1 cut(s)	1250
HpyAV	CCTTC	2 cut(s)	986, 1025
HpyCH4III	ACNGT	4 cut(s)	109, 343, 835, 1296
HpyCH4IV	ACGT	1 cut(s)	1245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 505, 675
HpyF3I	CTNAG	3 cut(s)	30, 71, 1194
HpySE526I	ACGT	1 cut(s)	1245
Hsp92II	CATG	5 cut(s)	350, 512, 1211, 1265, 1322
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	7 cut(s)	288, 425, 553, 619, 766, 1197, 1211
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	3 cut(s)	256, 370, 466
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	8 cut(s)	221, 449, 594, 638, 905, 971, 1013, 1339
MaeII	ACGT	1 cut(s)	1245
MaeIII	GTNAC	2 cut(s)	337, 535
MalI	GATC	7 cut(s)	290, 427, 555, 621, 768, 1199, 1213
MboI	GATC	7 cut(s)	288, 425, 553, 619, 766, 1197, 1211
MboII	GAAGA	6 cut(s)	92, 181, 629, 701, 1195, 1319
MflI	RGATCY	2 cut(s)	425, 619
MhlI	GDGCHC	3 cut(s)	501, 580, 603
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	4 cut(s)	387, 432, 566, 811
MluNI	TGGCCA	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	1131
MnlI	CCTC	7 cut(s)	116, 149, 590, 901, 942, 945, 1183
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	3 cut(s)	798, 1025, 1125
MslI	CAYNNNNRTG	2 cut(s)	705, 821
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	647, 1139
MspI	CCGG	1 cut(s)	1179
MspR9I	CCNGG	1 cut(s)	1180
Mva1269I	GAATGC	1 cut(s)	1326
MwoI	GCNNNNNNNGC	3 cut(s)	50, 505, 675
NciI	CCSGG	1 cut(s)	1180
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	7 cut(s)	288, 425, 553, 619, 766, 1197, 1211
NlaIII	CATG	5 cut(s)	350, 512, 1211, 1265, 1322
NlaIV	GGNNCC	2 cut(s)	519, 602
NmuCI	GTSAC	2 cut(s)	337, 535
NspI	RCATGY	2 cut(s)	512, 1322
OliI	CACNNNNGTG	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	975
PciI	ACATGT	1 cut(s)	1318
PctI	GAATGC	1 cut(s)	1326
PfeI	GAWTC	2 cut(s)	471, 641
PkrI	GCNGC	3 cut(s)	246, 385, 481
PscI	ACATGT	1 cut(s)	1318
Psp124BI	GAGCTC	2 cut(s)	501, 580
PspN4I	GGNNCC	2 cut(s)	519, 602
PspPI	GGNCC	2 cut(s)	4, 1272
PsuI	RGATCY	2 cut(s)	425, 619
PvuII	CAGCTG	2 cut(s)	647, 1139
RsaI	GTAC	1 cut(s)	1244
RsaNI	GTAC	1 cut(s)	1243
RseI	CAYNNNNRTG	2 cut(s)	705, 821
SacI	GAGCTC	2 cut(s)	501, 580
SaqAI	TTAA	3 cut(s)	798, 1025, 1125
SatI	GCNGC	3 cut(s)	245, 384, 480
Sau3AI	GATC	7 cut(s)	288, 425, 553, 619, 766, 1197, 1211
Sau96I	GGNCC	2 cut(s)	4, 1272
ScrFI	CCNGG	1 cut(s)	1180
SduI	GDGCHC	3 cut(s)	501, 580, 603
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	4, 1272
SmiMI	CAYNNNNRTG	2 cut(s)	705, 821
SmlI	CTYRAG	2 cut(s)	500, 850
SmoI	CTYRAG	2 cut(s)	500, 850
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	4 cut(s)	387, 432, 566, 811
SseBI	AGGCCT	1 cut(s)	975
SsiI	CCGC	3 cut(s)	207, 482, 1275
SspMI	CTAG	8 cut(s)	221, 449, 594, 638, 905, 971, 1013, 1339
SstI	GAGCTC	2 cut(s)	501, 580
StuI	AGGCCT	1 cut(s)	975
StyD4I	CCNGG	1 cut(s)	1178
TaaI	ACNGT	4 cut(s)	109, 343, 835, 1296
TaiI	ACGT	1 cut(s)	1248
TaqI	TCGA	1 cut(s)	574
TasI	AATT	4 cut(s)	387, 432, 566, 811
TfiI	GAWTC	2 cut(s)	471, 641
Tru1I	TTAA	3 cut(s)	798, 1025, 1125
Tru9I	TTAA	3 cut(s)	798, 1025, 1125
TscAI	CASTG	3 cut(s)	34, 823, 1299
TseFI	GTSAC	2 cut(s)	337, 535
TseI	GCWGC	3 cut(s)	244, 383, 479
Tsp45I	GTSAC	2 cut(s)	337, 535
TspDTI	ATGAA	8 cut(s)	99, 248, 308, 372, 685, 689, 732, 803
TspRI	CASTG	3 cut(s)	34, 823, 1299
VpaK11BI	GGWCC	2 cut(s)	4, 1272
XagI	CCTNNNNNAGG	1 cut(s)	525
XceI	RCATGY	2 cut(s)	512, 1322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	1315
XspI	CTAG	8 cut(s)	221, 449, 594, 638, 905, 971, 1013, 1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.