Rh6CG014600

Endo-1,4-beta-xylanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004763
Physical Location & Seq
Forward (+)
1582897 .. 1585880
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG014600.1

Sequence Viewer

Length: 1668 bp
ATGGGAAACACTACTCTCACCTTCGTCAGGCTGCAGCTTCTTATGTTCATTCTCCTCATGGGCTCACCCTTTGTTTTTTCCTTTGATGGTCCACTGTATGACTCTACTGCTTACACTGAGTGTAAAAGGCAGCCAGAGAAGCCTCAATATGGTGGAGGGATCATTGTTGATGAGCCTTCAGCTGTTGTAGACATGGACAATGGGGACGTTTATTCACCGGCATTCCTACTCCAAAATCTCACCGGCAACGGCACCATTTACAGCTTCTCCAGTTGGGTGAAGATAGGGGGTGCAGGTTCAGCACTGATACAGGCAAGTCTAAAGGCAGAAGATGAATCATACAATTGTATAGGAACTGTTTTGGCCAAGCGGGGATGCTGGTCATTCCTCAAGGGAGGCTTTGTCCTAAATTCACCACCTAATCTTTCTATACTATTCTTCCAGAATACGGATGGCAGAGATGTCGGCCTAGCAATTGCAAGTGCTTCTTTGCAGCCATTTAGTGTTCAGCAATGGAATACATATCACCAATATATGATCAACACTAAAAGGAAGCGTGCCGTGACGGTCCATGTCTCAAATGAACAAGGAAAGGGGTTGCAAGGAGCTGCAATTACCGTAGAGCAAGTCTCCAAAGATTTTCCATTTGGATCTGCAATTTCAAAGACCATTCTAGGCAATTTACCCTACCAGAATTGGTTTGTTGAGAGATTCAATGCTGTGGTATTCGAGAATGAACTCAAGTGGTATGCAACAGAACCTAATCAAGGCAATGTCACTTACACTATAGCAGATCAAATGTTGCAATTTGTTCGAGCTCACCAAATCACTGCTAGAGGGCACAATATATTCTGGGAAGATCCCAAATACACACCACCTTGGGTTCGAAACCTCACAGCTGACCAGCTAAAATCAGCTGTCAACTCTCGGATACAAAGCCTAATGAGCAAATACAAAGAAGAGTTCATTCATTGGGATGTCAGCAATGAAATGCTTCACTTTGATTTCTATGAGAAACAACTTGGCCCCAATGCCACCTTGGATTTCTTTCAGACGGCACACAAATCTGATCCTTTGGCAACCCTTTTTATGAATGACTTTAATGTGGTGGAGACTTGCACTGATGTGAATTCCACAGTTGATACCTATGTTTCAAGGCTGAGAGAACTTCAACAAGGTGGAGTATCAATGGATGGGATTGGATTAGAGGGTCATTTTATAATACCAAACCCCCCTCTAATGAGAGCTATTATAGACAAGTTGGCTACCCTAGGCCTTCCAATTTGGCTCACAGAGGTTGATATCAGCAATACTCTAGACAAAGAAACACAGGCCATTTATCTAGAGCAAGTATTAAGAGAAGGTTTCTCACATCCATCTGTAAATGGGATAATGCTCTGGAGTGCTCTACATCCTAACGGGTGCTACGAGATGTGCCTGACGGATATTAACCTTAAAAATCTACCAGCTGGTGATGTGGTGGACAAGCTCTTGAAAGAATGGCAAACCGGGAAGATAGAGGCTCAGATCGATGAGCATGGATCACATAGCTTTTTCGGGTTCTTGGGTGAGTACAGGGTTAGTGTGAAGTATGGAAATAGGACCGCAAACTCAACATTCTCACTGTGTGAAGGGGAAGAAACCAGACATGTTAGCATTCAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_10

Protein Analysis

555

Amino Acids

62.2

Weight (kDa)

5.3

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_10 PF00331 210 - 469 3.2e-49 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1220
Acc36I ACCTGC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 189
AciI CCGC 2 cut(s) 370, 1605
AclWI GGATC 5 cut(s) 167, 658, 854, 1064, 1549
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 2 cut(s) 409, 1129
AcuI CTGAAG 1 cut(s) 162
AdeI CACNNNGTG 2 cut(s) 120, 1628
AfaI GTAC 1 cut(s) 1574
AfiI CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
AflIII ACRYGT 1 cut(s) 1648
AgsI TTSAA 6 cut(s) 663, 715, 1155, 1172, 1495, 1661
AleI CACNNNNGTG 1 cut(s) 1124
Alw21I GWGCWC 2 cut(s) 820, 1408
Alw26I GTCTC 3 cut(s) 580, 634, 1106
AlwI GGATC 5 cut(s) 167, 658, 854, 1064, 1549
AoxI GGCC 5 cut(s) 363, 466, 1024, 1273, 1332
ApeKI GCWGC 5 cut(s) 31, 34, 130, 493, 608
ApoI RAATTY 2 cut(s) 409, 1129
Asp700I GAANNNNTTC 1 cut(s) 993
AspA2I CCTAGG 1 cut(s) 1270
AspS9I GGNCC 4 cut(s) 89, 568, 1025, 1602
AsuC2I CCSGG 1 cut(s) 1510
AsuII TTCGAA 1 cut(s) 886
AvaII GGWCC 3 cut(s) 89, 568, 1602
AvrII CCTAGG 1 cut(s) 1270
BaeGI GKGCMC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 1134, 1167
BalI TGGCCA 1 cut(s) 365
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 2 cut(s) 65, 820
Bbv12I GWGCWC 2 cut(s) 820, 1408
BbvI GCAGC 5 cut(s) 18, 46, 142, 505, 595
BccI CCATC 4 cut(s) 80, 446, 1187, 1384
BceAI ACGGC 3 cut(s) 265, 545, 1071
BcgI CGANNNNNNTGC 4 cut(s) 445, 479, 794, 828
BciVI GTATCC 1 cut(s) 924
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 1 cut(s) 1510
BcoDI GTCTC 3 cut(s) 580, 634, 1106
BfaI CTAG 6 cut(s) 470, 674, 834, 1271, 1316, 1343
BfmI CTRYAG 2 cut(s) 32, 786
BfuAI ACCTGC 1 cut(s) 284
BfuI GTATCC 1 cut(s) 924
BisI GCNGC 5 cut(s) 32, 35, 131, 494, 609
BlnI CCTAGG 1 cut(s) 1270
BlsI GCNGC 5 cut(s) 33, 36, 132, 495, 610
Bme1390I CCNGG 1 cut(s) 1510
Bme18I GGWCC 3 cut(s) 89, 568, 1602
BmgT120I GGNCC 4 cut(s) 89, 568, 1025, 1602
BmiI GGNNCC 2 cut(s) 253, 1027
BmrFI CCNGG 1 cut(s) 1510
BmsI GCATC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 614, 646
BpmI CTGGAG 2 cut(s) 253, 1420
Bpu14I TTCGAA 1 cut(s) 886
BpuEI CTTGAG 2 cut(s) 374, 725
BpuMI CCSGG 1 cut(s) 1510
Bsa29I ATCGAT 1 cut(s) 1530
BsaJI CCNNGG 3 cut(s) 878, 1038, 1270
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 387, 417
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
Bse118I RCCGGY 2 cut(s) 217, 242
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 3 cut(s) 518, 778, 991
BseCI ATCGAT 1 cut(s) 1530
BseDI CCNNGG 3 cut(s) 878, 1038, 1270
BseGI GGATG 6 cut(s) 380, 457, 982, 1198, 1372, 1411
BseLI CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
BseMI GCAATG 3 cut(s) 518, 778, 991
BseMII CTCAG 3 cut(s) 108, 1151, 1538
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 5 cut(s) 18, 46, 142, 505, 595
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
BshNI GGYRCC 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 1530
BsiHKAI GWGCWC 2 cut(s) 820, 1408
BsiSI CCGG 3 cut(s) 218, 243, 1509
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
BsmAI GTCTC 3 cut(s) 580, 634, 1106
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 2 cut(s) 221, 1656
BsnI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
Bsp119I TTCGAA 1 cut(s) 886
Bsp1286I GDGCHC 4 cut(s) 65, 820, 843, 1408
Bsp143I GATC 8 cut(s) 159, 537, 650, 793, 859, 1069, 1527, 1541
BspACI CCGC 2 cut(s) 370, 1605
BspANI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
BspCNI CTCAG 3 cut(s) 109, 1152, 1537
BspDI ATCGAT 1 cut(s) 1530
BspLI GGNNCC 2 cut(s) 253, 1027
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 5 cut(s) 167, 658, 854, 1064, 1549
BspT104I TTCGAA 1 cut(s) 886
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 3 cut(s) 518, 778, 991
BsrFI RCCGGY 2 cut(s) 217, 242
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 2 cut(s) 217, 242
BssECI CCNNGG 3 cut(s) 878, 1038, 1270
BssMI GATC 8 cut(s) 159, 537, 650, 793, 859, 1069, 1527, 1541
BssT1I CCWWGG 3 cut(s) 878, 1038, 1270
Bst4CI ACNGT 7 cut(s) 96, 358, 568, 619, 1138, 1626, 1665
Bst6I CTCTTC 1 cut(s) 954
BstBI TTCGAA 1 cut(s) 886
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 3 cut(s) 117, 1160, 1524
BstENI CCTNNNNNAGG 2 cut(s) 25, 765
BstF5I GGATG 6 cut(s) 380, 457, 982, 1198, 1372, 1411
BstKTI GATC 8 cut(s) 162, 540, 653, 796, 862, 1072, 1530, 1544
BstMAI GTCTC 3 cut(s) 580, 634, 1106
BstMBI GATC 8 cut(s) 159, 537, 650, 793, 859, 1069, 1527, 1541
BstMWI GCNNNNNNNGC 3 cut(s) 139, 299, 945
BstNSI RCATGY 1 cut(s) 1652
BstSCI CCNGG 1 cut(s) 1508
BstSFI CTRYAG 2 cut(s) 32, 786
BstSLI GKGCMC 1 cut(s) 843
BstV1I GCAGC 5 cut(s) 18, 46, 142, 505, 595
BstX2I RGATCY 2 cut(s) 650, 859
BstYI RGATCY 2 cut(s) 650, 859
Bsu15I ATCGAT 1 cut(s) 1530
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
BsuTUI ATCGAT 1 cut(s) 1530
BtsCI GGATG 6 cut(s) 380, 457, 982, 1198, 1372, 1411
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 6 cut(s) 92, 114, 302, 828, 1119, 1622
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 558
Cfr10I RCCGGY 2 cut(s) 217, 242
Cfr13I GGNCC 4 cut(s) 89, 568, 1025, 1602
ClaI ATCGAT 1 cut(s) 1530
Csp6I GTAC 1 cut(s) 1573
CviAII CATG 5 cut(s) 58, 193, 572, 1538, 1649
CviQI GTAC 1 cut(s) 1573
DdeI CTNAG 3 cut(s) 117, 1160, 1524
DpnI GATC 8 cut(s) 161, 539, 652, 795, 861, 1071, 1529, 1543
DpnII GATC 8 cut(s) 159, 537, 650, 793, 859, 1069, 1527, 1541
DraIII CACNNNGTG 2 cut(s) 120, 1628
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
Ecl136II GAGCTC 1 cut(s) 818
Eco130I CCWWGG 3 cut(s) 878, 1038, 1270
Eco147I AGGCCT 1 cut(s) 1275
Eco24I GRGCYC 2 cut(s) 65, 820
Eco32I GATATC 1 cut(s) 1303
Eco47I GGWCC 3 cut(s) 89, 568, 1602
Eco53kI GAGCTC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 818
EcoNI CCTNNNNNAGG 2 cut(s) 25, 765
EcoRI GAATTC 1 cut(s) 1129
EcoRV GATATC 1 cut(s) 1303
EcoT14I CCWWGG 3 cut(s) 878, 1038, 1270
EcoT38I GRGCYC 2 cut(s) 65, 820
ErhI CCWWGG 3 cut(s) 878, 1038, 1270
FaeI CATG 5 cut(s) 61, 196, 575, 1541, 1652
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 472, 504
FaqI GGGAC 1 cut(s) 218
FatI CATG 5 cut(s) 57, 192, 571, 1537, 1648
FauI CCCGC 1 cut(s) 363
FbaI TGATCA 1 cut(s) 537
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 32, 35, 131, 494, 609
FokI GGATG 6 cut(s) 387, 464, 989, 1205, 1359, 1398
FriOI GRGCYC 2 cut(s) 65, 820
Fsp4HI GCNGC 5 cut(s) 32, 35, 131, 494, 609
FspBI CTAG 6 cut(s) 470, 674, 834, 1271, 1316, 1343
GluI GCNGC 5 cut(s) 32, 35, 131, 494, 609
GsuI CTGGAG 2 cut(s) 253, 1420
HaeIII GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
HapII CCGG 3 cut(s) 218, 243, 1509
Hin1II CATG 5 cut(s) 61, 196, 575, 1541, 1652
HincII GTYRAC 1 cut(s) 922
HindII GTYRAC 1 cut(s) 922
HinfI GANTC 3 cut(s) 101, 335, 711
HpaII CCGG 3 cut(s) 218, 243, 1509
Hpy166II GTNNAC 4 cut(s) 92, 190, 922, 1483
Hpy188I TCNGA 4 cut(s) 930, 1053, 1069, 1527
Hpy188III TCNNGA 6 cut(s) 442, 730, 1316, 1343, 1399, 1492
Hpy8I GTNNAC 4 cut(s) 92, 190, 922, 1483
HpyAV CCTTC 5 cut(s) 31, 186, 1286, 1355, 1625
HpyCH4III ACNGT 7 cut(s) 96, 358, 568, 619, 1138, 1626, 1665
HpyCH4IV ACGT 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 299, 945
HpyF3I CTNAG 3 cut(s) 117, 1160, 1524
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 5 cut(s) 61, 196, 575, 1541, 1652
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 8 cut(s) 159, 537, 650, 793, 859, 1069, 1527, 1541
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 5 cut(s) 18, 46, 142, 505, 595
LweI GCATC 1 cut(s) 365
MaeI CTAG 6 cut(s) 470, 674, 834, 1271, 1316, 1343
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 562, 775
MalI GATC 8 cut(s) 161, 539, 652, 795, 861, 1071, 1529, 1543
MboI GATC 8 cut(s) 159, 537, 650, 793, 859, 1069, 1527, 1541
MboII GAAGA 7 cut(s) 292, 341, 430, 869, 971, 1525, 1649
MfeI CAATTG 2 cut(s) 343, 474
MflI RGATCY 2 cut(s) 650, 859
MhlI GDGCHC 4 cut(s) 65, 820, 843, 1408
MlsI TGGCCA 1 cut(s) 365
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 95
Mox20I TGGCCA 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 993
MscI TGGCCA 1 cut(s) 365
MseI TTAA 4 cut(s) 1101, 1355, 1449, 1455
MslI CAYNNNNRTG 2 cut(s) 975, 1124
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 4 cut(s) 182, 899, 917, 1469
MspI CCGG 3 cut(s) 218, 243, 1509
MspR9I CCNGG 1 cut(s) 1510
MunI CAATTG 2 cut(s) 343, 474
Mva1269I GAATGC 2 cut(s) 221, 1656
MwoI GCNNNNNNNGC 3 cut(s) 139, 299, 945
NciI CCSGG 1 cut(s) 1510
NdeII GATC 8 cut(s) 159, 537, 650, 793, 859, 1069, 1527, 1541
NlaIII CATG 5 cut(s) 61, 196, 575, 1541, 1652
NlaIV GGNNCC 2 cut(s) 253, 1027
NmuCI GTSAC 2 cut(s) 562, 775
NspI RCATGY 1 cut(s) 1652
NspV TTCGAA 1 cut(s) 886
OliI CACNNNNGTG 1 cut(s) 1124
PceI AGGCCT 1 cut(s) 1275
PciI ACATGT 1 cut(s) 1648
PcsI WCGNNNNNNNCGW 1 cut(s) 1425
PctI GAATGC 2 cut(s) 221, 1656
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 2 cut(s) 335, 711
PkrI GCNGC 5 cut(s) 33, 36, 132, 495, 610
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 1648
PsiI TTATAA 1 cut(s) 1220
Psp124BI GAGCTC 1 cut(s) 820
PspN4I GGNNCC 2 cut(s) 253, 1027
PspPI GGNCC 4 cut(s) 89, 568, 1025, 1602
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 2 cut(s) 650, 859
PvuII CAGCTG 4 cut(s) 182, 899, 917, 1469
RsaI GTAC 1 cut(s) 1574
RsaNI GTAC 1 cut(s) 1573
RseI CAYNNNNRTG 2 cut(s) 975, 1124
SacI GAGCTC 1 cut(s) 820
SaqAI TTAA 4 cut(s) 1101, 1355, 1449, 1455
SatI GCNGC 5 cut(s) 32, 35, 131, 494, 609
Sau3AI GATC 8 cut(s) 159, 537, 650, 793, 859, 1069, 1527, 1541
Sau96I GGNCC 4 cut(s) 89, 568, 1025, 1602
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 1510
SduI GDGCHC 4 cut(s) 65, 820, 843, 1408
SfaNI GCATC 1 cut(s) 365
SfcI CTRYAG 2 cut(s) 32, 786
SfuI TTCGAA 1 cut(s) 886
SinI GGWCC 3 cut(s) 89, 568, 1602
SmiMI CAYNNNNRTG 2 cut(s) 975, 1124
SmlI CTYRAG 2 cut(s) 389, 740
SmoI CTYRAG 2 cut(s) 389, 740
SseBI AGGCCT 1 cut(s) 1275
SsiI CCGC 2 cut(s) 370, 1605
SspMI CTAG 6 cut(s) 470, 674, 834, 1271, 1316, 1343
SstI GAGCTC 1 cut(s) 820
StuI AGGCCT 1 cut(s) 1275
StyD4I CCNGG 1 cut(s) 1508
StyI CCWWGG 3 cut(s) 878, 1038, 1270
TaaI ACNGT 7 cut(s) 96, 358, 568, 619, 1138, 1626, 1665
TaiI ACGT 1 cut(s) 210
TaqI TCGA 4 cut(s) 729, 814, 886, 1530
TatI WGTACW 1 cut(s) 1572
TfiI GAWTC 2 cut(s) 335, 711
Tru1I TTAA 4 cut(s) 1101, 1355, 1449, 1455
Tru9I TTAA 4 cut(s) 1101, 1355, 1449, 1455
TscAI CASTG 6 cut(s) 99, 121, 309, 835, 1126, 1629
TseFI GTSAC 2 cut(s) 562, 775
TseI GCWGC 5 cut(s) 31, 34, 130, 493, 608
Tsp45I GTSAC 2 cut(s) 562, 775
TspDTI ATGAA 8 cut(s) 37, 348, 597, 750, 955, 959, 1002, 1106
TspGWI ACGGA 2 cut(s) 464, 1457
TspRI CASTG 6 cut(s) 99, 121, 309, 835, 1126, 1629
VpaK11BI GGWCC 3 cut(s) 89, 568, 1602
XagI CCTNNNNNAGG 2 cut(s) 25, 765
XapI RAATTY 2 cut(s) 409, 1129
XbaI TCTAGA 2 cut(s) 1315, 1342
XceI RCATGY 1 cut(s) 1652
XcmI CCANNNNNNNNNTGG 2 cut(s) 449, 1036
XmaJI CCTAGG 1 cut(s) 1270
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 6 cut(s) 470, 674, 834, 1271, 1316, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.