Rh6CG014800

Endo-1,4-beta-xylanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004763
Physical Location & Seq
Forward (+)
1599177 .. 1599683
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG014800.1

Sequence Viewer

Length: 507 bp
ATGCAACAGAATCTAAACAAGGCAAAATCAACTACACTACTGTATCAGATGTTGCAATTTGTTCGAGATAACCAAATCACTGTTAGAGGGCACAATGTATTCTGGGAAGATCCTAAATATACACCAGCTTGGATTCGAAACCTCACAGGCAATAAGCTAAAATCAACCGTCATCTCTCGAAAAAGCCTTATGACCCAATACAAAGAAGAGTTCATCCATTGGGATGTCCACAATGAAATGCTTCACTTTGATTTCGAGAAGCAGGAATCACCTTGGAATTCTTTGTCAACCCTTTTTATAAATGTGTTTAATGTGGTGGAGACTTGCAGTGATGTAGATTCCAGAGTTGATATCTATGTCTCATGGCTGACAGAACTTCAACAAGGTGGATTTTCAACGGATGGGATTGGATTTGGTAGTGGGTCATTTTACAGTGCCCAACCCTCCTCTAATGAGAGCTATTATGGACAAGTCACTAGGCCTTCCTATTTGGCTCATAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_10

Protein Analysis

168

Amino Acids

19.53

Weight (kDa)

6.19

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_10 PF00331 16 - 94 2.3e-10 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 277
AgsI TTSAA 2 cut(s) 380, 396
AluBI AGCT 3 cut(s) 128, 157, 459
AluI AGCT 3 cut(s) 128, 157, 459
Alw26I GTCTC 2 cut(s) 314, 364
AlwI GGATC 1 cut(s) 104
AoxI GGCC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 261
AsuII TTCGAA 1 cut(s) 136
BaeGI GKGCMC 2 cut(s) 93, 439
BaeI ACNNNNGTAYC 2 cut(s) 26, 59
BccI CCATC 1 cut(s) 395
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BcoDI GTCTC 2 cut(s) 314, 364
BfaI CTAG 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 3 cut(s) 213, 229, 406
BseRI GAGGAG 1 cut(s) 436
BseSI GKGCMC 2 cut(s) 93, 439
BshFI GGCC 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 314, 364
BsnI GGCC 1 cut(s) 481
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 93, 439
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 1 cut(s) 481
BspPI GGATC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 272
Bst4CI ACNGT 4 cut(s) 42, 82, 169, 434
Bst6I CTCTTC 1 cut(s) 201
BstBI TTCGAA 1 cut(s) 136
BstF5I GGATG 3 cut(s) 213, 229, 406
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 314, 364
BstMBI GATC 1 cut(s) 109
BstSLI GKGCMC 2 cut(s) 93, 439
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 481
BtsCI GGATG 3 cut(s) 213, 229, 406
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 3 cut(s) 78, 334, 439
CviAII CATG 1 cut(s) 363
CviJI RGCY 7 cut(s) 128, 157, 186, 367, 459, 481, 494
CviKI_1 RGCY 7 cut(s) 128, 157, 186, 367, 459, 481, 494
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 272
Eco147I AGGCCT 1 cut(s) 481
Eco32I GATATC 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 277
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 1 cut(s) 366
FaiI YATR 7 cut(s) 120, 191, 299, 357, 364, 465, 498
FatI CATG 1 cut(s) 362
FokI GGATG 3 cut(s) 200, 236, 413
FspBI CTAG 1 cut(s) 477
HaeIII GGCC 1 cut(s) 481
Hin1II CATG 1 cut(s) 366
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 4 cut(s) 10, 133, 266, 338
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 229, 288
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 4 cut(s) 65, 177, 256, 342
Hpy8I GTNNAC 2 cut(s) 229, 288
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 4 cut(s) 42, 82, 169, 434
HpyCH4V TGCA 3 cut(s) 4, 55, 327
Hsp92II CATG 1 cut(s) 366
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 88, 132, 138, 248, 355
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 472
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 119, 218
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 93, 439
MluCI AATT 2 cut(s) 56, 277
MnlI CCTC 4 cut(s) 80, 152, 454, 457
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 222
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 472
NspV TTCGAA 1 cut(s) 136
PceI AGGCCT 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 4 cut(s) 10, 133, 266, 338
PsiI TTATAA 1 cut(s) 299
PsuI RGATCY 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 309
Sau3AI GATC 1 cut(s) 109
SduI GDGCHC 2 cut(s) 93, 439
SetI ASST 6 cut(s) 130, 144, 159, 274, 388, 461
SfuI TTCGAA 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 2 cut(s) 56, 277
SseBI AGGCCT 1 cut(s) 481
SspMI CTAG 1 cut(s) 477
StuI AGGCCT 1 cut(s) 481
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 4 cut(s) 42, 82, 169, 434
TaqI TCGA 4 cut(s) 64, 136, 178, 255
TasI AATT 2 cut(s) 56, 277
TfiI GAWTC 4 cut(s) 10, 133, 266, 338
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 3 cut(s) 85, 334, 439
TseFI GTSAC 1 cut(s) 472
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 2 cut(s) 202, 249
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 3 cut(s) 85, 334, 439
XapI RAATTY 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.