Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004763

Physical Location & Seq

Genomic Coordinates Reverse (-)

14790831 .. 14793925

Gene Structure 3095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCAGGGAAAGAGGCTGCAAGGAGCGGCAATTGACGTAGAGCAAGTCTCCAAAGATTTCCCATTTGGATCTGCAATTGCAAAGACCATTCTAGGCAATCTGCCCTATCAGAATTGGTTCGCAAAACGATTCAATGCCGCGGTGTTTGAGAACGAACTCAAGTGGTATGCAACGGAACCTGAACAGGGCAAAACCAACTACACCGTTCCAGATCAAATGCTGCAATTTGTGCGTGCCAACCGAGTCATTGCTAGAGGTCACAACATATTCTGGGAAGATCCCAAATACACGCCGCCATGGGTTCGAAACCTTACCGGCAGCGAGCTGCATTTGGCGGTAAACTCCCGAATCCAAAGCCTAATGAGCCAATACAGAGAAGAGTTCGTCCATTGGGACGTCAGCAATGAAATGCTTCACTTTGATTTCTATGAGCAGAAGCTTGGCCCCAATGCCACATTGCATTTTTTCGAGACGGCACACAAATCTGACCCTTTGGCAACCCTTTTCATGAATGATTTTAATGTGGTCGAGACTTGCAGCGATGTAAATTCGACCGTTGATTCCTACATTTCAAGGCTGAGGGAGCTTAGGCATGGTGGAGCATTGATGGATGGGATTGGACTAGAGGGTCATTTTACAGTACCAAACCTCCCTCTAATGAGAGCAATCCTTGACAAGTTGGCCACATTAGGCCTTCCCATTTGGCTCACAGAGGTTGATATCAGCAGCACTCTAGACAAAGAAACACAGGCAATTTATCTAGAACAAGTTTTACGAGAAGGCTTCTCGCATCCATCGGTGAATGGGATAATGCTTTGGACTGCATTGCATCCTAATGGGTGCTACCAAATGTGCCTAACAGACAATAACCTTCATAACCTACCTGCTGGTGATATGGTGGACAAGCTCTTGAAAGAATGGCAAACTGGGGAGGTAGAGGGCCAGACAGATGAGCATGGATCATACAGCTTCTATGGTTTCTTGGGTGAATATAGAGTAAGTATCAAGTATGGCAATAGGACTTCAAGCTCAACATTCTCACTGTGCCAAGGTGAAGAAACCAGACATATTAGCATTCAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_10

Protein Analysis

362

Amino Acids

41.14

Weight (kDa)

5.37

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	16 - 275	3e-44	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38300 AT4G38650
fragaria_vesca	FvH4_2g01510 FvH4_2g01510 FvH4_2g01510 FvH4_2g01510
malus_domestica	MD05G1119000.v1.1 MD10G1122000.v1.1
prunus_persica	Prupe.8G163400_v2.0.a1 Prupe.8G163400_v2.0.a1
pyrus_communis	pycom05g11310
rosa_chinensis	RchiOBHm_Chr6g0244121 RchiOBHm_Chr6g0244171
rosa_laevigata	RLG00000015377 RLG00000015378 RLG00000015379
rosa_multiflora	Rmu_co8265637.1_g000001 Rmu_sc0000638.1_g000001 Rmu_sc0000638.1_g000015 Rmu_sc0001455.1_g000031
rosa_roxburghii	Rroxscaffold_7G00216050
rosa_rugosa	Rorug05G0507600 Rorug05G0507700
rosa_samantha	Rh6AG022100 Rh6BG017800 Rh6CG014600 Rh6CG014700 Rh6CG014800 Rh6DG015800 Rh6DG015900
rosa_wichuraiana	Rw6G001820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	627
AatII	GACGTC	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	892
AccBSI	CCGCTC	1 cut(s)	26
AccII	CGCG	1 cut(s)	140
AciI	CCGC	5 cut(s)	26, 138, 140, 293, 335
AclWI	GGATC	3 cut(s)	76, 272, 967
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	1 cut(s)	547
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	133, 573, 913, 1026, 1079
AluBI	AGCT	6 cut(s)	325, 439, 586, 907, 969, 1029
AluI	AGCT	6 cut(s)	325, 439, 586, 907, 969, 1029
Alw26I	GTCTC	3 cut(s)	52, 464, 524
AlwI	GGATC	3 cut(s)	76, 272, 967
AoxI	GGCC	4 cut(s)	442, 681, 691, 940
ApeKI	GCWGC	6 cut(s)	16, 220, 318, 325, 537, 726
ApoI	RAATTY	1 cut(s)	547
Asp700I	GAANNNNTTC	2 cut(s)	116, 411
AspS9I	GGNCC	2 cut(s)	443, 940
AsuHPI	GGTGA	4 cut(s)	811, 902, 998, 1064
AsuII	TTCGAA	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	683
BbvCI	CCTCAGC	1 cut(s)	578
BbvI	GCAGC	6 cut(s)	3, 207, 312, 330, 549, 738
BccI	CCATC	3 cut(s)	601, 605, 802
BceAI	ACGGC	1 cut(s)	489
BcoDI	GTCTC	3 cut(s)	52, 464, 524
BfaI	CTAG	5 cut(s)	92, 252, 623, 734, 761
BfuAI	ACCTGC	1 cut(s)	892
BisI	GCNGC	9 cut(s)	17, 27, 138, 221, 293, 319, 326, 538, 727
BlsI	GCNGC	9 cut(s)	18, 28, 139, 222, 294, 320, 327, 539, 728
BmgT120I	GGNCC	2 cut(s)	443, 940
BmiI	GGNNCC	2 cut(s)	177, 445
BmrI	ACTGGG	1 cut(s)	936
BmsI	GCATC	2 cut(s)	799, 838
BmuI	ACTGGG	1 cut(s)	936
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bpu10I	CCTNAGC	2 cut(s)	578, 587
Bpu14I	TTCGAA	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	138, 296, 1048
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	931
Bse3DI	GCAATG	4 cut(s)	246, 409, 455, 824
BseDI	CCNNGG	3 cut(s)	138, 296, 1048
BseGI	GGATG	3 cut(s)	616, 790, 829
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	4 cut(s)	246, 409, 455, 824
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	1 cut(s)	931
BseXI	GCAGC	6 cut(s)	3, 207, 312, 330, 549, 738
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	555
BshFI	GGCC	4 cut(s)	444, 683, 693, 942
BsiEI	CGRYCG	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	3 cut(s)	52, 464, 524
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	1074
BsnI	GGCC	4 cut(s)	444, 683, 693, 942
Bsp119I	TTCGAA	1 cut(s)	304
Bsp143I	GATC	4 cut(s)	68, 211, 277, 959
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	5 cut(s)	26, 138, 140, 293, 335
BspANI	GGCC	4 cut(s)	444, 683, 693, 942
BspCNI	CTCAG	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	177, 445
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	3 cut(s)	76, 272, 967
BspT104I	TTCGAA	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	26
BsrDI	GCAATG	4 cut(s)	246, 409, 455, 824
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	931
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	138, 296, 1048
BssMI	GATC	4 cut(s)	68, 211, 277, 959
BssNI	GRCGYC	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	296, 1048
Bst4CI	ACNGT	4 cut(s)	205, 556, 640, 1044
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	234, 323
BstDEI	CTNAG	2 cut(s)	578, 587
BstDSI	CCRYGG	2 cut(s)	138, 296
BstF5I	GGATG	3 cut(s)	616, 790, 829
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	4 cut(s)	71, 214, 280, 962
BstMAI	GTCTC	3 cut(s)	52, 464, 524
BstMBI	GATC	4 cut(s)	68, 211, 277, 959
BstMCI	CGRYCG	1 cut(s)	555
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 363, 583
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	6 cut(s)	3, 207, 312, 330, 549, 738
BstX2I	RGATCY	2 cut(s)	68, 277
BstYI	RGATCY	2 cut(s)	68, 277
BsuRI	GGCC	4 cut(s)	444, 683, 693, 942
BtgI	CCRYGG	2 cut(s)	138, 296
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	3 cut(s)	616, 790, 829
BtsIMutI	CAGTG	1 cut(s)	1040
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	2 cut(s)	234, 323
CciI	TCATGA	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	443, 940
Cfr42I	CCGCGG	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	4 cut(s)	297, 508, 593, 956
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	2 cut(s)	578, 587
DpnI	GATC	4 cut(s)	70, 213, 279, 961
DpnII	GATC	4 cut(s)	68, 211, 277, 959
DrdI	GACNNNNNNGTC	1 cut(s)	627
DseDI	GACNNNNNNGTC	1 cut(s)	627
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	296, 1048
Eco147I	AGGCCT	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	721
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	296, 1048
ErhI	CCWWGG	2 cut(s)	296, 1048
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	4 cut(s)	300, 511, 596, 959
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	4 cut(s)	296, 507, 592, 955
Fnu4HI	GCNGC	9 cut(s)	17, 27, 138, 221, 293, 319, 326, 538, 727
FokI	GGATG	3 cut(s)	623, 777, 816
Fsp4HI	GCNGC	9 cut(s)	17, 27, 138, 221, 293, 319, 326, 538, 727
FspBI	CTAG	5 cut(s)	92, 252, 623, 734, 761
GluI	GCNGC	9 cut(s)	17, 27, 138, 221, 293, 319, 326, 538, 727
HaeIII	GGCC	4 cut(s)	444, 683, 693, 942
HapII	CCGG	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	4 cut(s)	300, 511, 596, 959
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	4 cut(s)	129, 243, 348, 560
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	4 cut(s)	811, 902, 998, 1064
Hpy166II	GTNNAC	2 cut(s)	340, 901
Hpy188I	TCNGA	2 cut(s)	111, 487
Hpy188III	TCNNGA	8 cut(s)	209, 345, 469, 508, 529, 734, 761, 910
Hpy8I	GTNNAC	2 cut(s)	340, 901
HpyAV	CCTTC	3 cut(s)	704, 773, 881
HpyCH4III	ACNGT	4 cut(s)	205, 556, 640, 1044
HpyCH4IV	ACGT	2 cut(s)	36, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 363, 583
HpyF3I	CTNAG	2 cut(s)	578, 587
HpySE526I	ACGT	2 cut(s)	36, 396
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	4 cut(s)	300, 511, 596, 959
KspI	CCGCGG	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	68, 211, 277, 959
LmnI	GCTCC	3 cut(s)	23, 583, 599
Lsp1109I	GCAGC	6 cut(s)	3, 207, 312, 330, 549, 738
LweI	GCATC	2 cut(s)	799, 838
MaeI	CTAG	5 cut(s)	92, 252, 623, 734, 761
MaeII	ACGT	2 cut(s)	36, 396
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	4 cut(s)	70, 213, 279, 961
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	4 cut(s)	68, 211, 277, 959
MboII	GAAGA	3 cut(s)	287, 389, 1067
MfeI	CAATTG	3 cut(s)	30, 75, 1079
MflI	RGATCY	2 cut(s)	68, 277
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	7 cut(s)	30, 75, 112, 224, 547, 753, 1079
MluNI	TGGCCA	1 cut(s)	683
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	9 cut(s)	6, 248, 573, 619, 659, 663, 706, 925, 931
Mox20I	TGGCCA	1 cut(s)	683
MroXI	GAANNNNTTC	2 cut(s)	116, 411
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	834
Msp20I	TGGCCA	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	315
MunI	CAATTG	3 cut(s)	30, 75, 1079
Mva1269I	GAATGC	1 cut(s)	1074
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	229, 363, 583
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	4 cut(s)	68, 211, 277, 959
NlaIII	CATG	4 cut(s)	300, 511, 596, 959
NlaIV	GGNNCC	2 cut(s)	177, 445
NmuCI	GTSAC	1 cut(s)	257
NspV	TTCGAA	1 cut(s)	304
PagI	TCATGA	1 cut(s)	507
PceI	AGGCCT	1 cut(s)	693
PctI	GAATGC	1 cut(s)	1074
PdmI	GAANNNNTTC	2 cut(s)	116, 411
PfeI	GAWTC	3 cut(s)	129, 348, 560
PkrI	GCNGC	9 cut(s)	18, 28, 139, 222, 294, 320, 327, 539, 728
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	177, 445
PspPI	GGNCC	2 cut(s)	443, 940
PsrI	GAACNNNNNNTAC	2 cut(s)	756, 788
PsuI	RGATCY	2 cut(s)	68, 277
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
RseI	CAYNNNNRTG	1 cut(s)	834
SacII	CCGCGG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	9 cut(s)	17, 27, 138, 221, 293, 319, 326, 538, 727
Sau3AI	GATC	4 cut(s)	68, 211, 277, 959
Sau96I	GGNCC	2 cut(s)	443, 940
SchI	GAGTC	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	799, 838
Sfr303I	CCGCGG	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	304
SgrBI	CCGCGG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	7 cut(s)	30, 75, 112, 224, 547, 753, 1079
SseBI	AGGCCT	1 cut(s)	693
SsiI	CCGC	5 cut(s)	26, 138, 140, 293, 335
SspMI	CTAG	5 cut(s)	92, 252, 623, 734, 761
StuI	AGGCCT	1 cut(s)	693
StyI	CCWWGG	2 cut(s)	296, 1048
TaaI	ACNGT	4 cut(s)	205, 556, 640, 1044
TaiI	ACGT	2 cut(s)	39, 399
TaqI	TCGA	4 cut(s)	304, 468, 528, 551
TasI	AATT	7 cut(s)	30, 75, 112, 224, 547, 753, 1079
TauI	GCSGC	3 cut(s)	29, 140, 295
TfiI	GAWTC	3 cut(s)	129, 348, 560
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	1047
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	6 cut(s)	16, 220, 318, 325, 537, 726
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	4 cut(s)	420, 496, 524, 863
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	1047
XapI	RAATTY	1 cut(s)	547
XbaI	TCTAGA	2 cut(s)	733, 760
XmnI	GAANNNNTTC	2 cut(s)	116, 411
XspI	CTAG	5 cut(s)	92, 252, 623, 734, 761
ZraI	GACGTC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.