Rmu_sc0001455.1_g000031

Endo-1,4-beta-xylanase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001455.1
Physical Location & Seq
Reverse (-)
136254 .. 139232
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001455.1_g000031.1.cds

Sequence Viewer

Length: 1668 bp
atgggaaacactactctcaccgtcgtcaggctgcagcttcttatgttcattctcctcatgggctcaccctttgttttttcctttgatggtccactatatgactctactgcttacactgagtgtaaaaggcagccagagaagcctctatatggtggagggatcattgttgatgagccttcagctgttgtagacatagacaatggggacgtttattcaccggcattcctactccaaaatctcaccggcaacggcaccatttacagcttctccagttgggtgaagatagggggtgcaggttcagcactgatacaggcaagtctaaaggcagaagatgaatcatacaattgtataggaactgttttggccaagcggggatgctggtcattcctcaagggtggctttgtcctaaattcaccacctaatttctctatactattcttccagaatacggatggcagagatgtcggcctagcaattgcaagtgcttctttgcagccatttagtgctcagcaatggaatacatatcaccaatatatgatcaacactaaaaggaagcgtgccgtgacggtccatgtctcaaatggacaaggaaaggggctgcaaggagctgcaattaccgtagagcaagtctccaaagatttcccatttggatctgcaatttcaaagaccattctaggcaatttagcctaccagaattggtttgttgagagattcaatgctgcggtgttcgagaatgaacttaagtggtatgcaactgaacctaatcaaggcaatgtcacttacactatagcagatcaaatgttgcaatttgttcgagctcaccaaatcactgctagagggcacaatatattctgggaagatcccaaatacacaccaccttgggttcgatacctcacagctgatcagctacaatcagctgtcaactctcggatacaaagcctaatgagcaaatacaaagaagagttcattcattgggatgtcagcaatgaaatgcttcactttgatttctatgagaaacaacttggccccaatgccaccttggatttctttcagacggcacacaaatctgatcctttggcaaccctttttatgaatgactttaatgtggtggagacttgcactgatgtgaattccacagttgatacctatgtttcaaggctgagagaacttcaacaaggtggagtatcaatggatgggattggactagagggtcattttacaataccaaacccccctctaatgagagctattatagacaagttggctaccctaggccttcctatttggctcacagaggttgatatcagcaatactctagacaaagaaacacaggccatttatctagagcaagtattaagagaaggtttctcacatccatctgtaaatgggataatgctctggagtgctctacatcctaacgggtgctacgagatgtgcctgacggataataaccttaaaaatctaccagctggtgatgtggtggacaagctcttgaaagaatggcaaactgggaagatggaggctcggatcgaagagcatggatcacatagctttttcgggttcttgggtgagtacagggtgagtgtgaagtatggaaataggaccgcacactcaacattctcactgtgtgaaggggaagaaactagacatgttagcattcagctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

555

Amino Acids

62.12

Weight (kDa)

5.42

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1209
Acc36I ACCTGC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 189
AciI CCGC 3 cut(s) 370, 722, 1605
AclWI GGATC 6 cut(s) 167, 658, 854, 1064, 1535, 1549
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 2 cut(s) 409, 1129
AcuI CTGAAG 1 cut(s) 162
AdeI CACNNNGTG 2 cut(s) 120, 1628
AfaI GTAC 1 cut(s) 1574
AfiI CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
AflII CTTAAG 1 cut(s) 740
AflIII ACRYGT 1 cut(s) 1648
AgsI TTSAA 5 cut(s) 663, 715, 1155, 1172, 1495
AleI CACNNNNGTG 1 cut(s) 1124
Alw21I GWGCWC 3 cut(s) 508, 820, 1408
Alw26I GTCTC 3 cut(s) 580, 634, 1106
AlwI GGATC 6 cut(s) 167, 658, 854, 1064, 1535, 1549
AoxI GGCC 5 cut(s) 363, 466, 1024, 1273, 1332
ApeKI GCWGC 7 cut(s) 31, 34, 130, 493, 598, 608, 719
ApoI RAATTY 2 cut(s) 409, 1129
Asp700I GAANNNNTTC 1 cut(s) 993
AspA2I CCTAGG 1 cut(s) 1270
AspS9I GGNCC 4 cut(s) 89, 568, 1025, 1602
AvaII GGWCC 3 cut(s) 89, 568, 1602
AvrII CCTAGG 1 cut(s) 1270
BaeGI GKGCMC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 1134, 1167
BalI TGGCCA 1 cut(s) 365
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 2 cut(s) 65, 820
Bbv12I GWGCWC 3 cut(s) 508, 820, 1408
BbvI GCAGC 7 cut(s) 18, 46, 142, 505, 585, 595, 706
BccI CCATC 5 cut(s) 80, 446, 1187, 1384, 1510
BceAI ACGGC 3 cut(s) 265, 545, 1071
BcgI CGANNNNNNTGC 4 cut(s) 445, 479, 794, 828
BciVI GTATCC 1 cut(s) 924
BclI TGATCA 2 cut(s) 537, 901
BcoDI GTCTC 3 cut(s) 580, 634, 1106
BfaI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1644
BfmI CTRYAG 2 cut(s) 32, 786
BfrI CTTAAG 1 cut(s) 740
BfuAI ACCTGC 1 cut(s) 284
BfuI GTATCC 1 cut(s) 924
BisI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
BlnI CCTAGG 1 cut(s) 1270
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 7 cut(s) 33, 36, 132, 495, 600, 610, 721
Bme18I GGWCC 3 cut(s) 89, 568, 1602
BmgT120I GGNCC 4 cut(s) 89, 568, 1025, 1602
BmiI GGNNCC 2 cut(s) 253, 1027
BmrI ACTGGG 1 cut(s) 1518
BmsI GCATC 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 1518
BplI GAGNNNNNCTC 2 cut(s) 614, 646
BpmI CTGGAG 2 cut(s) 253, 1420
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 878, 1038, 1270
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
Bse118I RCCGGY 2 cut(s) 217, 242
Bse1I ACTGG 2 cut(s) 270, 1513
Bse3DI GCAATG 3 cut(s) 518, 778, 991
BseDI CCNNGG 3 cut(s) 878, 1038, 1270
BseGI GGATG 6 cut(s) 380, 457, 982, 1198, 1372, 1411
BseLI CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
BseMI GCAATG 3 cut(s) 518, 778, 991
BseMII CTCAG 3 cut(s) 108, 521, 1151
BseNI ACTGG 2 cut(s) 270, 1513
BseRI GAGGAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 7 cut(s) 18, 46, 142, 505, 585, 595, 706
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
BshNI GGYRCC 1 cut(s) 251
BsiHKAI GWGCWC 3 cut(s) 508, 820, 1408
BsiSI CCGG 2 cut(s) 218, 243
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 4 cut(s) 27, 149, 448, 767
BsmAI GTCTC 3 cut(s) 580, 634, 1106
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 2 cut(s) 221, 1656
BsnI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
Bsp1286I GDGCHC 5 cut(s) 65, 508, 820, 843, 1408
Bsp143I GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 3 cut(s) 370, 722, 1605
BspANI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
BspCNI CTCAG 3 cut(s) 109, 520, 1152
BspLI GGNNCC 2 cut(s) 253, 1027
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 6 cut(s) 167, 658, 854, 1064, 1535, 1549
BspQI GCTCTTC 1 cut(s) 1527
BspT107I GGYRCC 1 cut(s) 251
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 3 cut(s) 518, 778, 991
BsrFI RCCGGY 2 cut(s) 217, 242
BsrI ACTGG 2 cut(s) 270, 1513
BssAI RCCGGY 2 cut(s) 217, 242
BssECI CCNNGG 3 cut(s) 878, 1038, 1270
BssMI GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
BssT1I CCWWGG 3 cut(s) 878, 1038, 1270
Bst4CI ACNGT 6 cut(s) 22, 358, 568, 619, 1138, 1626
Bst6I CTCTTC 2 cut(s) 954, 1527
BstAFI CTTAAG 1 cut(s) 740
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 3 cut(s) 117, 507, 1160
BstENI CCTNNNNNAGG 1 cut(s) 765
BstF5I GGATG 6 cut(s) 380, 457, 982, 1198, 1372, 1411
BstKTI GATC 9 cut(s) 162, 540, 653, 796, 862, 904, 1072, 1530, 1544
BstMAI GTCTC 3 cut(s) 580, 634, 1106
BstMBI GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
BstMWI GCNNNNNNNGC 3 cut(s) 139, 299, 945
BstNSI RCATGY 1 cut(s) 1652
BstSFI CTRYAG 2 cut(s) 32, 786
BstSLI GKGCMC 1 cut(s) 843
BstV1I GCAGC 7 cut(s) 18, 46, 142, 505, 585, 595, 706
BstX2I RGATCY 2 cut(s) 650, 859
BstYI RGATCY 2 cut(s) 650, 859
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
BtsCI GGATG 6 cut(s) 380, 457, 982, 1198, 1372, 1411
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 5 cut(s) 114, 302, 828, 1119, 1622
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 558
Cfr10I RCCGGY 2 cut(s) 217, 242
Cfr13I GGNCC 4 cut(s) 89, 568, 1025, 1602
Csp6I GTAC 1 cut(s) 1573
CviAII CATG 4 cut(s) 58, 572, 1538, 1649
CviQI GTAC 1 cut(s) 1573
DdeI CTNAG 3 cut(s) 117, 507, 1160
DpnI GATC 9 cut(s) 161, 539, 652, 795, 861, 903, 1071, 1529, 1543
DpnII GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
DraIII CACNNNGTG 2 cut(s) 120, 1628
DrdI GACNNNNNNGTC 1 cut(s) 1209
DseDI GACNNNNNNGTC 1 cut(s) 1209
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 954, 1527
EarI CTCTTC 2 cut(s) 954, 1527
Ecl136II GAGCTC 1 cut(s) 818
Eco130I CCWWGG 3 cut(s) 878, 1038, 1270
Eco147I AGGCCT 1 cut(s) 1275
Eco24I GRGCYC 2 cut(s) 65, 820
Eco32I GATATC 1 cut(s) 1303
Eco47I GGWCC 3 cut(s) 89, 568, 1602
Eco53kI GAGCTC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 818
EcoNI CCTNNNNNAGG 1 cut(s) 765
EcoRI GAATTC 1 cut(s) 1129
EcoRV GATATC 1 cut(s) 1303
EcoT14I CCWWGG 3 cut(s) 878, 1038, 1270
EcoT38I GRGCYC 2 cut(s) 65, 820
ErhI CCWWGG 3 cut(s) 878, 1038, 1270
FaeI CATG 4 cut(s) 61, 575, 1541, 1652
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 472, 504
FaqI GGGAC 1 cut(s) 218
FatI CATG 4 cut(s) 57, 571, 1537, 1648
FauI CCCGC 1 cut(s) 363
FbaI TGATCA 2 cut(s) 537, 901
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
FokI GGATG 6 cut(s) 387, 464, 989, 1205, 1359, 1398
FriOI GRGCYC 2 cut(s) 65, 820
Fsp4HI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
FspBI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1644
GluI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
GsuI CTGGAG 2 cut(s) 253, 1420
HaeIII GGCC 5 cut(s) 365, 468, 1026, 1275, 1334
HapII CCGG 2 cut(s) 218, 243
Hin1II CATG 4 cut(s) 61, 575, 1541, 1652
HincII GTYRAC 1 cut(s) 922
HindII GTYRAC 1 cut(s) 922
HinfI GANTC 3 cut(s) 101, 335, 711
HpaII CCGG 2 cut(s) 218, 243
Hpy166II GTNNAC 4 cut(s) 92, 190, 922, 1483
Hpy188I TCNGA 4 cut(s) 930, 1053, 1069, 1527
Hpy188III TCNNGA 6 cut(s) 442, 730, 1316, 1343, 1399, 1492
Hpy8I GTNNAC 4 cut(s) 92, 190, 922, 1483
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 186, 1286, 1355, 1625
HpyCH4III ACNGT 6 cut(s) 22, 358, 568, 619, 1138, 1626
HpyCH4IV ACGT 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 299, 945
HpyF3I CTNAG 3 cut(s) 117, 507, 1160
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 4 cut(s) 61, 575, 1541, 1652
Ksp22I TGATCA 2 cut(s) 537, 901
Kzo9I GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
LguI GCTCTTC 1 cut(s) 1527
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 7 cut(s) 18, 46, 142, 505, 585, 595, 706
LweI GCATC 1 cut(s) 365
MaeI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1644
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 562, 775
MalI GATC 9 cut(s) 161, 539, 652, 795, 861, 903, 1071, 1529, 1543
MboI GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
MboII GAAGA 8 cut(s) 292, 341, 430, 869, 971, 1525, 1544, 1649
MfeI CAATTG 2 cut(s) 343, 474
MflI RGATCY 2 cut(s) 650, 859
MhlI GDGCHC 5 cut(s) 65, 508, 820, 843, 1408
MlsI TGGCCA 1 cut(s) 365
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 95
Mox20I TGGCCA 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 993
MscI TGGCCA 1 cut(s) 365
MseI TTAA 4 cut(s) 741, 1101, 1355, 1455
MslI CAYNNNNRTG 2 cut(s) 975, 1124
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 5 cut(s) 182, 899, 917, 1469, 1663
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 2 cut(s) 218, 243
MunI CAATTG 2 cut(s) 343, 474
Mva1269I GAATGC 2 cut(s) 221, 1656
MwoI GCNNNNNNNGC 3 cut(s) 139, 299, 945
NdeII GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
NlaIII CATG 4 cut(s) 61, 575, 1541, 1652
NlaIV GGNNCC 2 cut(s) 253, 1027
NmuCI GTSAC 2 cut(s) 562, 775
NspI RCATGY 1 cut(s) 1652
OliI CACNNNNGTG 1 cut(s) 1124
PceI AGGCCT 1 cut(s) 1275
PciI ACATGT 1 cut(s) 1648
PciSI GCTCTTC 1 cut(s) 1527
PcsI WCGNNNNNNNCGW 1 cut(s) 1425
PctI GAATGC 2 cut(s) 221, 1656
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 2 cut(s) 335, 711
PkrI GCNGC 7 cut(s) 33, 36, 132, 495, 600, 610, 721
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 1648
Psp124BI GAGCTC 1 cut(s) 820
PspN4I GGNNCC 2 cut(s) 253, 1027
PspPI GGNCC 4 cut(s) 89, 568, 1025, 1602
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 2 cut(s) 650, 859
PvuII CAGCTG 5 cut(s) 182, 899, 917, 1469, 1663
RsaI GTAC 1 cut(s) 1574
RsaNI GTAC 1 cut(s) 1573
RseI CAYNNNNRTG 2 cut(s) 975, 1124
SacI GAGCTC 1 cut(s) 820
SapI GCTCTTC 1 cut(s) 1527
SaqAI TTAA 4 cut(s) 741, 1101, 1355, 1455
SatI GCNGC 7 cut(s) 32, 35, 131, 494, 599, 609, 720
Sau3AI GATC 9 cut(s) 159, 537, 650, 793, 859, 901, 1069, 1527, 1541
Sau96I GGNCC 4 cut(s) 89, 568, 1025, 1602
SchI GAGTC 1 cut(s) 95
SduI GDGCHC 5 cut(s) 65, 508, 820, 843, 1408
SfaNI GCATC 1 cut(s) 365
SfcI CTRYAG 2 cut(s) 32, 786
SinI GGWCC 3 cut(s) 89, 568, 1602
SmiMI CAYNNNNRTG 2 cut(s) 975, 1124
SmlI CTYRAG 2 cut(s) 389, 740
SmoI CTYRAG 2 cut(s) 389, 740
SseBI AGGCCT 1 cut(s) 1275
SsiI CCGC 3 cut(s) 370, 722, 1605
SspMI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1644
SstI GAGCTC 1 cut(s) 820
StuI AGGCCT 1 cut(s) 1275
StyI CCWWGG 3 cut(s) 878, 1038, 1270
TaaI ACNGT 6 cut(s) 22, 358, 568, 619, 1138, 1626
TaiI ACGT 1 cut(s) 210
TaqI TCGA 4 cut(s) 729, 814, 886, 1530
TatI WGTACW 1 cut(s) 1572
TfiI GAWTC 2 cut(s) 335, 711
Tru1I TTAA 4 cut(s) 741, 1101, 1355, 1455
Tru9I TTAA 4 cut(s) 741, 1101, 1355, 1455
TscAI CASTG 5 cut(s) 121, 309, 835, 1126, 1629
TseFI GTSAC 2 cut(s) 562, 775
TseI GCWGC 7 cut(s) 31, 34, 130, 493, 598, 608, 719
Tsp45I GTSAC 2 cut(s) 562, 775
TspDTI ATGAA 7 cut(s) 37, 348, 750, 955, 959, 1002, 1106
TspGWI ACGGA 2 cut(s) 464, 1457
TspRI CASTG 5 cut(s) 121, 309, 835, 1126, 1629
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 3 cut(s) 89, 568, 1602
XagI CCTNNNNNAGG 1 cut(s) 765
XapI RAATTY 2 cut(s) 409, 1129
XbaI TCTAGA 2 cut(s) 1315, 1342
XceI RCATGY 1 cut(s) 1652
XcmI CCANNNNNNNNNTGG 3 cut(s) 449, 578, 1036
XmaJI CCTAGG 1 cut(s) 1270
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 8 cut(s) 470, 674, 834, 1205, 1271, 1316, 1343, 1644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.