Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001511

Physical Location & Seq

Genomic Coordinates Reverse (-)

19502020 .. 19502490

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCACCTTCCCCTATATCTAGCCCACGGACTACTTCGGGCTCATCCACGCCTCTCACAGGTGGCAGTGGTGCCATTACATTTATTCACATGAACCAGCCCATCAACTTGCAAGAGGGTTTTGGAGGCATTTCAAAACCCTCGAATGGTCTCTATGTCAATGGGCCCTCCTCCTATCATGATTCATGTCCTGACATGTTTCGAGGGAAGCAGCCAGGGTCTCATATCTTCTCAGAACTGATGCCTTGTGAAAATGATGTTCTGGGAAAGCAGTTTGTAAGGCCTGCCAAAGCGGAGCAGTCCGATGGACAGTCAGTTTTAGCTGATCGCGTGTCTCGCCAACTCCTTAAGGATCATGTTAAAATGAACCTGAAACTGGATTTAAGCCCCAACTCTCCTTTGCCGAACCGCACAAATGGTGTCTTAACTTATTTTGATGGACCCACCAATCAGTTCAAGCTCTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

157

Amino Acids

16.79

Weight (kDa)

8.62

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63700 AT1G63700
fragaria_vesca	FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920
malus_domestica	MD01G1205500.v1.1 MD06G1085900.v1.1 MD07G1274900.v1.1
prunus_persica	Prupe.2G298100_v2.0.a1 Prupe.2G298100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1
pyrus_communis	pycom01g21500 pycom06g08220 pycom07g25100
rosa_chinensis	RchiOBHm_Chr1g0377881 RchiOBHm_Chr7g0197281
rosa_laevigata	RLG00000003944 RLG00000026489
rosa_multiflora	Rmu_co8459889.1_g000001 Rmu_sc0004491.1_g000001 Rmu_sc0004824.1_g000011 Rmu_sc0010019.1_g000003 Rmu_sc0017623.1_g000004 Rmu_sc0030897.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258510 Rroxscaffold_4G00280980
rosa_rugosa	Rorug01G0405400 Rorug07G0039200
rosa_samantha	Rh1AG426400 Rh1BG382900 Rh1CG396700 Rh1DG413900 Rh7AG164200 Rh7BG166000 Rh7CG172700 Rh7DG165400
rosa_wichuraiana	Rw1G037210 Rw7G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	293, 409
AclWI	GGATC	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	59, 146, 376
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	135, 457
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	2 cut(s)	323, 460
AluI	AGCT	2 cut(s)	323, 460
Alw26I	GTCTC	3 cut(s)	155, 225, 339
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	2 cut(s)	164, 281
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	211
AspS9I	GGNCC	3 cut(s)	164, 165, 440
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	44, 168
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	110, 299, 431
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	3 cut(s)	155, 225, 339
BfaI	CTAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	347
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	164, 165, 440
BmiI	GGNNCC	3 cut(s)	73, 166, 442
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	448
BsaI	GGTCTC	2 cut(s)	155, 225
BsaJI	CCNNGG	2 cut(s)	26, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 146, 376
Bse1I	ACTGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	26, 215
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	3 cut(s)	59, 146, 376
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	166, 283
BshNI	GGYRCC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	59, 146, 376
BsmAI	GTCTC	3 cut(s)	155, 225, 339
BsnI	GGCC	2 cut(s)	166, 283
Bso31I	GGTCTC	2 cut(s)	155, 225
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	44, 168
Bsp143I	GATC	2 cut(s)	325, 352
BspACI	CCGC	2 cut(s)	293, 409
BspANI	GGCC	2 cut(s)	166, 283
BspCNI	CTCAG	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	73, 166, 442
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	347
BspTNI	GGTCTC	2 cut(s)	155, 225
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	2 cut(s)	26, 215
BssMI	GATC	2 cut(s)	325, 352
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	312
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	232
BstDSI	CCRYGG	1 cut(s)	26
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	328, 355
BstMAI	GTCTC	3 cut(s)	155, 225, 339
BstMBI	GATC	2 cut(s)	325, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	166, 283
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	178
Cfr13I	GGNCC	3 cut(s)	164, 165, 440
CviAII	CATG	5 cut(s)	91, 179, 186, 196, 356
CviJI	RGCY	9 cut(s)	24, 42, 100, 166, 214, 283, 323, 387, 460
CviKI_1	RGCY	9 cut(s)	24, 42, 100, 166, 214, 283, 323, 387, 460
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	2 cut(s)	327, 354
DpnII	GATC	2 cut(s)	325, 352
Eco147I	AGGCCT	1 cut(s)	283
Eco24I	GRGCYC	2 cut(s)	44, 168
Eco31I	GGTCTC	2 cut(s)	155, 225
Eco47I	GGWCC	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	44, 168
FaeI	CATG	5 cut(s)	94, 182, 189, 199, 359
FaiI	YATR	8 cut(s)	17, 92, 156, 180, 187, 197, 225, 357
FatI	CATG	5 cut(s)	90, 178, 185, 195, 355
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	2 cut(s)	44, 168
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	166, 283
Hin1II	CATG	5 cut(s)	94, 182, 189, 199, 359
HinfI	GANTC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	235, 304
Hpy188III	TCNNGA	2 cut(s)	179, 191
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	1 cut(s)	232
Hsp92II	CATG	5 cut(s)	94, 182, 189, 199, 359
Kzo9I	GATC	2 cut(s)	325, 352
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	9 cut(s)	45, 110, 201, 204, 228, 248, 297, 362, 383
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	327, 354
MboI	GATC	2 cut(s)	325, 352
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	2 cut(s)	44, 168
MnlI	CCTC	7 cut(s)	63, 109, 119, 151, 178, 181, 197
MseI	TTAA	5 cut(s)	348, 360, 383, 425, 469
MspCI	CTTAAG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	2 cut(s)	325, 352
NlaIII	CATG	5 cut(s)	94, 182, 189, 199, 359
NlaIV	GGNNCC	3 cut(s)	73, 166, 442
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	199
PagI	TCATGA	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	283
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	213
PscI	ACATGT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	73, 166, 442
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	164, 165, 440
SaqAI	TTAA	5 cut(s)	348, 360, 383, 425, 469
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	2 cut(s)	325, 352
Sau96I	GGNCC	3 cut(s)	164, 165, 440
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	44, 168
SetI	ASST	5 cut(s)	10, 64, 325, 372, 462
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	347, 463
SmoI	CTYRAG	2 cut(s)	347, 463
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	2 cut(s)	293, 409
SspMI	CTAG	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	143, 202
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	5 cut(s)	348, 360, 383, 425, 469
Tru9I	TTAA	5 cut(s)	348, 360, 383, 425, 469
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	107, 174, 380
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	73
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	440
XagI	CCTNNNNNAGG	1 cut(s)	57
XceI	RCATGY	1 cut(s)	199
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.