Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001511

Physical Location & Seq

Genomic Coordinates Forward (+)

3363092 .. 3368022

Gene Structure 4931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2706 bp

ATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGCAAAGAAGAAGTCAGGGAGCAAGGAAAGTTTCATCGATTCATTACATCGGAAATTTAAGTTTTCATCTGAAAGCAGAGTGAATGGTAGATCTGGAGGGTCTCGAAGACCATGTAGTGATGCCATTTCGGAAAAGGGGTCTCGATCTCCTCTAGAATCAAGATCGCCTTCACCCTCCAAACAAGTTGCAAGAACTCAAAGTTTTGCTGAAAGGAGTATTTCTCAACCACTTCCACTTCCTGGTCAACATCCTGCTCATGTCGGACGTACAGATTCTGGTTTTAGTATATCACCAAAACCAAGATCAGATAAATGCTCCAAGCCATTATTGTTTCTACCTCTCCCGAGACCTCGGTGCATTGGTGGGAGGTCAAATCGTGCCGACTTTGATGATGGAGATATGAATACTGGTTCAGTTTCTAGTGATACCTCTGTTGATAGTGAAGATCCAGCTGACTCAGGTCACCGCAGCCCTCAGGCAATTGACTATGAAAGTGGAACTAGAACTGCAGCGGGCAGTCCTTCCAGTGTGATGCTCAAGGATCAGTCCTTCACTGTGGCCCCAGTAATCTCAAGAGAGGCAAAAAAACCAGCCAACATTTCATTCATTAATCAAATTTCCCCTTCATCGCCTAAACGGAGACCTTTGAGCAGTCATGTGCCAAATCTCCAGGTACCTTATCAAGGAGCTTTCTGGAGTGCTCCTGACAGCTCCATGTCAAGTCCTTCTAGAAGTCCAATTAGAGCATTTGGAACTGAGCAAGCCGTGAACTCTGCTTTCTGGGCTCCAAAAACTTATACTGATGTCACCATAGCAGGATCTTGCCACGGCTCCAGTCCAGGTTCTGGTCACAATTCTGGGCACAATTCAATGGGAGGGGATATGTCGGGACAGTTGTTTTGGCAGCAAAGCAAGGGTAGCCCCGAGTATTCTCCAGTGCCTAGTCCTAGATTGACAAGCCCTGGCCCAGGCTCAAGAATTCATAGTGGTGCTGTTACACCTATTCATCCCAGAGCAGGTGGGGCTCTCAATGATTCGCAGACAAGCTGGCCTGATGATGGGAAACAACAAAGTCACCGTTTGCCTCTTCCTCCAGTAACAATATCAAATGCATCACCCTTTTCTCATTCAAATTCAGCAGCAACATCTCCTTCTGTGCCACGAAGTCCTGGAAGGGCAGAAAATCCAGCAAGCCCTGGTTCTCGGTGGAAAAAGGGGAAGCTGCTGGGTAGAGGCACATTTGGACATGTTTATGTCGGTTTTAATAGTGAAAGTGGCGAAATGTGTGCAATGAAGGAGGTCACATTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCAAAGCAATTAATGCAGGAAATTACTTTGTTGAGCCGTTTACGGCATCCAAACATTGTGCAGTATTATGGGTCTGAATCAGTTGATGACAAGCTTTATATATATTTGGAGTATGTATCTGGTGGTTCTATATATAAACTTCTCCAAGACTATGGGCAATTTGGCGAACTTGCAATTCGTAGTTATACTCAACAAATCTTGTCAGGGCTTGCATATTTGCATGCTAAAAATACCGTCCACAGGGATATAAAAGGAGCAAACATACTTGTAGACCCCAATGGCCGTGTCAAGTTGGCGGACTTTGGGATGGCAAAGCATATTACCGGGCAGTCATGTCCTCTATCATTTAAGGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAAGAACTCAAGTGGAGCCAACCTTGCTGTGGATATATGGAGTCTTGGGTGCACGGTTTTGGAAATGGCTACAACAAAACCACCTTGGAGTCAGTATGAAGGGGTTGCTGCCATGTTTAAGATTGGGAATAGCAAGGAACTGCCAGCAATTCCAGATCACCTCTTGGATGATGGAAAGGATTTCATAAGGCAATGCTTACAGCGAAATCCACTTCATCGTCCTACAGCTGCTCAACTCTTGGAGCATCCCTTTGTGAAATATGCAGCACCTTTGGCAAGACCTATATTGGGCCCTGAGCCTTCTGATTCACCTGCTGGGGTTGCAAATGGAGTGAAAGCTCTGGGCATTGGGCAATCAAGAAATTTCTCCAATTTGGATTCAGATAGGCTTGCAATTCACTCATCTAGAGTGTCAAAAACTCATCACCATACCAGTGATCTCCATATTCCAAGGAACATATCATGTCCTGTATCACCCATCGGAAGCCCTCTATTGCACTCCAGATCACCACCACACTTAAATGGAAGAATGTCACCGTCTCCTATATCTAGCCCGCGGACCACTTCGGGCTCATCCACGCCTCTCACTGGTGGAAGCGGTGCCATTCCATTTATTCACCTAAAACAGTCCATAAATTTGCAAGAGGGTTTCGGAGGCATTTCAAATCCCTCAAATGGTCTCTATGGTAATGGCCCCTCCTATCATGATTCATCTCCTGACATGTTTCGAGGGAAGCAACCAGGGTCTCCCATCTTCTCAGAATTAATGCCCTCTGAAAATGATGTTCTTGCAAAACAGTTTGTAAGGCCCGCGCATACAGAGCAGTACAATGGACAGTCAGTTTTGGCTGATCGTGTGTCTCGCCAACTCCTCAAGGATCATGTTAAGATGAACAGACTGGATTTAAGTCCAAAGTCTCCTTTGACTGGCCGGACAAATGGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

902

Amino Acids

96.94

Weight (kDa)

9.58

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	416 - 671	2.9e-71	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	417 - 667	4.9e-47	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	449 - 566	7.7e-06	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63700 AT1G63700
fragaria_vesca	FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920
malus_domestica	MD01G1205500.v1.1 MD06G1085900.v1.1 MD07G1274900.v1.1
prunus_persica	Prupe.2G298100_v2.0.a1 Prupe.2G298100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1
pyrus_communis	pycom01g21500 pycom06g08220 pycom07g25100
rosa_chinensis	RchiOBHm_Chr1g0377881 RchiOBHm_Chr7g0197281
rosa_laevigata	RLG00000003944 RLG00000026489
rosa_multiflora	Rmu_co8459889.1_g000001 Rmu_sc0004491.1_g000001 Rmu_sc0004824.1_g000011 Rmu_sc0010019.1_g000003 Rmu_sc0017623.1_g000004 Rmu_sc0030897.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258510 Rroxscaffold_4G00280980
rosa_rugosa	Rorug01G0405400 Rorug07G0039200
rosa_samantha	Rh1AG426400 Rh1BG382900 Rh1CG396700 Rh1DG413900 Rh7AG164200 Rh7BG166000 Rh7CG172700 Rh7DG165400
rosa_wichuraiana	Rw1G037210 Rw7G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1757
AarI	CACCTGC	2 cut(s)	1043, 2077
Acc36I	ACCTGC	2 cut(s)	1043, 2077
Acc65I	GGTACC	1 cut(s)	709
AccB1I	GGYRCC	3 cut(s)	709, 1744, 2357
AccB7I	CCANNNNNTGG	2 cut(s)	275, 881
AccI	GTMKAC	1 cut(s)	1644
AccII	CGCG	2 cut(s)	2314, 2570
AciI	CCGC	7 cut(s)	502, 548, 1670, 2312, 2314, 2355, 2568
AclWI	GGATC	4 cut(s)	476, 585, 862, 2643
AcoI	YGGCCR	2 cut(s)	1654, 2686
AcsI	RAATTY	6 cut(s)	89, 651, 1014, 1168, 2119, 2392
AfaI	GTAC	3 cut(s)	304, 711, 2585
AflIII	ACRYGT	2 cut(s)	1282, 2478
AgsI	TTSAA	3 cut(s)	906, 1167, 2421
AjnI	CCWGG	8 cut(s)	274, 705, 874, 997, 1003, 1204, 1231, 2497
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	8 cut(s)	488, 725, 747, 1083, 1258, 1468, 1985, 2096
AluI	AGCT	8 cut(s)	488, 725, 747, 1083, 1258, 1468, 1985, 2096
Alw21I	GWGCWC	2 cut(s)	739, 1811
Alw26I	GTCTC	9 cut(s)	141, 180, 376, 670, 2301, 2441, 2508, 2622, 2679
Alw44I	GTGCAC	1 cut(s)	1807
AlwI	GGATC	4 cut(s)	476, 585, 862, 2643
AlwNI	CAGNNNCTG	2 cut(s)	311, 881
Ama87I	CYCGRG	2 cut(s)	379, 959
AoxI	GGCC	8 cut(s)	594, 1000, 1085, 1654, 2047, 2449, 2564, 2686
ApaI	GGGCCC	1 cut(s)	2051
ApaLI	GTGCAC	1 cut(s)	1807
ApeKI	GCWGC	8 cut(s)	504, 545, 940, 1175, 1258, 1865, 1985, 2021
ApoI	RAATTY	6 cut(s)	89, 651, 1014, 1168, 2119, 2392
ArsI	GACNNNNNNTTYG	4 cut(s)	32, 64, 918, 950
AseI	ATTAAT	3 cut(s)	645, 1385, 2522
Asp718I	GGTACC	1 cut(s)	709
AspLEI	GCGC	1 cut(s)	2572
AspS9I	GGNCC	7 cut(s)	595, 1001, 2047, 2048, 2316, 2450, 2565
AsuC2I	CCSGG	1 cut(s)	1699
AvaI	CYCGRG	2 cut(s)	379, 959
AvaII	GGWCC	1 cut(s)	2316
AxyI	CCTNAGG	2 cut(s)	510, 1749
BaeGI	GKGCMC	3 cut(s)	900, 1811, 2051
BaeI	ACNNNNGTAYC	2 cut(s)	453, 486
BanI	GGYRCC	3 cut(s)	709, 1744, 2357
BanII	GRGCYC	4 cut(s)	823, 1063, 2051, 2330
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	739, 1811
BbvI	GCAGC	8 cut(s)	516, 557, 952, 1187, 1245, 1852, 1972, 2033
BccI	CCATC	7 cut(s)	422, 1088, 1675, 1735, 1922, 2243, 2516
BceAI	ACGGC	5 cut(s)	785, 880, 1395, 1433, 1641
BcgI	CGANNNNNNTGC	2 cut(s)	1304, 1338
BciT130I	CCWGG	8 cut(s)	276, 707, 876, 999, 1005, 1206, 1233, 2499
BcnI	CCSGG	1 cut(s)	1699
BcoDI	GTCTC	9 cut(s)	141, 180, 376, 670, 2301, 2441, 2508, 2622, 2679
BfaI	CTAG	8 cut(s)	188, 456, 537, 765, 978, 984, 2163, 2307
BfmI	CTRYAG	2 cut(s)	543, 1980
BfuAI	ACCTGC	2 cut(s)	1043, 2077
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	8 cut(s)	505, 546, 941, 1176, 1259, 1866, 1986, 2022
BlsI	GCNGC	8 cut(s)	506, 547, 942, 1177, 1260, 1867, 1987, 2023
Bme1390I	CCNGG	9 cut(s)	276, 707, 876, 999, 1005, 1206, 1233, 1699, 2499
Bme18I	GGWCC	1 cut(s)	2316
BmeT110I	CYCGRG	2 cut(s)	379, 959
BmgT120I	GGNCC	7 cut(s)	595, 1001, 2047, 2048, 2316, 2450, 2565
BmiI	GGNNCC	9 cut(s)	597, 711, 822, 868, 1746, 1774, 2049, 2359, 2452
BmrFI	CCNGG	9 cut(s)	276, 707, 876, 999, 1005, 1206, 1233, 1699, 2499
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	6 cut(s)	145, 558, 1157, 1345, 1429, 2011
BmuI	ACTGGG	1 cut(s)	593
BoxI	GACNNNNGTC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BpmI	CTGGAG	7 cut(s)	150, 689, 751, 853, 954, 1113, 2242
Bpu10I	CCTNAGC	1 cut(s)	2052
BpuEI	CTTGAG	5 cut(s)	557, 592, 994, 1750, 2615
BpuMI	CCSGG	1 cut(s)	1699
Bsa29I	ATCGAT	1 cut(s)	72
BsaI	GGTCTC	6 cut(s)	141, 180, 376, 670, 2441, 2508
BsaJI	CCNNGG	9 cut(s)	386, 862, 997, 1003, 1231, 1841, 2207, 2312, 2498
Bse21I	CCTNAGG	2 cut(s)	510, 1749
Bse3DI	GCAATG	2 cut(s)	1332, 1955
BseBI	CCWGG	8 cut(s)	276, 707, 876, 999, 1005, 1206, 1233, 2499
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	9 cut(s)	386, 862, 997, 1003, 1231, 1841, 2207, 2312, 2498
BseGI	GGATG	9 cut(s)	26, 283, 1042, 1420, 1686, 1746, 1930, 2002, 2330
BseMI	GCAATG	2 cut(s)	1332, 1955
BseMII	CTCAG	6 cut(s)	507, 524, 783, 1740, 2043, 2529
BseRI	GAGGAG	2 cut(s)	174, 2618
BseSI	GKGCMC	3 cut(s)	900, 1811, 2051
BseXI	GCAGC	8 cut(s)	516, 557, 952, 1187, 1245, 1852, 1972, 2033
BseYI	CCCAGC	2 cut(s)	1261, 2072
BsgI	GTGCAG	1 cut(s)	1454
Bsh1236I	CGCG	2 cut(s)	2314, 2570
BshFI	GGCC	8 cut(s)	596, 1002, 1087, 1656, 2049, 2451, 2566, 2688
BshNI	GGYRCC	3 cut(s)	709, 1744, 2357
BshVI	ATCGAT	1 cut(s)	72
BsiHKAI	GWGCWC	2 cut(s)	739, 1811
BsiHKCI	CYCGRG	2 cut(s)	379, 959
BsiSI	CCGG	2 cut(s)	1698, 2689
BslFI	GGGAC	1 cut(s)	939
BsmAI	GTCTC	9 cut(s)	141, 180, 376, 670, 2301, 2441, 2508, 2622, 2679
BsmBI	CGTCTC	1 cut(s)	2301
BsmFI	GGGAC	1 cut(s)	939
BsnI	GGCC	8 cut(s)	596, 1002, 1087, 1656, 2049, 2451, 2566, 2688
Bso31I	GGTCTC	6 cut(s)	141, 180, 376, 670, 2441, 2508
BsoBI	CYCGRG	2 cut(s)	379, 959
Bsp120I	GGGCCC	1 cut(s)	2047
Bsp1286I	GDGCHC	7 cut(s)	739, 823, 900, 1063, 1811, 2051, 2330
BspACI	CCGC	7 cut(s)	502, 548, 1670, 2312, 2314, 2355, 2568
BspANI	GGCC	8 cut(s)	596, 1002, 1087, 1656, 2049, 2451, 2566, 2688
BspCNI	CTCAG	6 cut(s)	506, 523, 784, 1741, 2044, 2528
BspDI	ATCGAT	1 cut(s)	72
BspFNI	CGCG	2 cut(s)	2314, 2570
BspHI	TCATGA	1 cut(s)	2461
BspLI	GGNNCC	9 cut(s)	597, 711, 822, 868, 1746, 1774, 2049, 2359, 2452
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	2 cut(s)	1043, 2077
BspPI	GGATC	4 cut(s)	476, 585, 862, 2643
BspT107I	GGYRCC	3 cut(s)	709, 1744, 2357
BspTNI	GGTCTC	6 cut(s)	141, 180, 376, 670, 2441, 2508
BsrDI	GCAATG	2 cut(s)	1332, 1955
BssECI	CCNNGG	9 cut(s)	386, 862, 997, 1003, 1231, 1841, 2207, 2312, 2498
BssT1I	CCWWGG	2 cut(s)	1841, 2207
Bst2UI	CCWGG	8 cut(s)	276, 707, 876, 999, 1005, 1206, 1233, 2499
Bst4CI	ACNGT	9 cut(s)	592, 930, 1115, 1609, 1813, 2295, 2385, 2556, 2595
Bst6I	CTCTTC	1 cut(s)	1128
BstAPI	GCANNNNNTGC	1 cut(s)	1387
BstDEI	CTNAG	7 cut(s)	493, 510, 792, 1365, 1749, 2052, 2515
BstDSI	CCRYGG	2 cut(s)	862, 2312
BstEII	GGTNACC	1 cut(s)	497
BstENI	CCTNNNNNAGG	2 cut(s)	717, 1002
BstF5I	GGATG	9 cut(s)	26, 283, 1042, 1420, 1686, 1746, 1930, 2002, 2330
BstFNI	CGCG	2 cut(s)	2314, 2570
BstHHI	GCGC	1 cut(s)	2572
BstMAI	GTCTC	9 cut(s)	141, 180, 376, 670, 2301, 2441, 2508, 2622, 2679
BstMWI	GCNNNNNNNGC	8 cut(s)	818, 954, 1058, 1387, 1781, 2030, 2078, 2578
BstNI	CCWGG	8 cut(s)	276, 707, 876, 999, 1005, 1206, 1233, 2499
BstNSI	RCATGY	3 cut(s)	1286, 1598, 2482
BstPAI	GACNNNNGTC	1 cut(s)	495
BstPI	GGTNACC	1 cut(s)	497
BstSCI	CCNGG	9 cut(s)	274, 705, 874, 997, 1003, 1204, 1231, 1697, 2497
BstSFI	CTRYAG	2 cut(s)	543, 1980
BstSLI	GKGCMC	3 cut(s)	900, 1811, 2051
BstUI	CGCG	2 cut(s)	2314, 2570
BstV1I	GCAGC	8 cut(s)	516, 557, 952, 1187, 1245, 1852, 1972, 2033
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	3 cut(s)	125, 481, 854
BstXI	CCANNNNNNTGG	1 cut(s)	1526
BstYI	RGATCY	3 cut(s)	125, 481, 854
Bsu15I	ATCGAT	1 cut(s)	72
Bsu36I	CCTNAGG	2 cut(s)	510, 1749
BsuRI	GGCC	8 cut(s)	596, 1002, 1087, 1656, 2049, 2451, 2566, 2688
BsuTUI	ATCGAT	1 cut(s)	72
BtgI	CCRYGG	2 cut(s)	862, 2312
BtgZI	GCGATG	1 cut(s)	648
BtsCI	GGATG	9 cut(s)	26, 283, 1042, 1420, 1686, 1746, 1930, 2002, 2330
BtsIMutI	CAGTG	5 cut(s)	568, 588, 978, 2197, 2343
BveI	ACCTGC	2 cut(s)	1043, 2077
CaiI	CAGNNNCTG	2 cut(s)	311, 881
CciI	TCATGA	1 cut(s)	2461
CfoI	GCGC	1 cut(s)	2572
Cfr13I	GGNCC	7 cut(s)	595, 1001, 2047, 2048, 2316, 2450, 2565
Cfr42I	CCGCGG	1 cut(s)	2315
ClaI	ATCGAT	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	303, 710, 2584
CviQI	GTAC	3 cut(s)	303, 710, 2584
DdeI	CTNAG	7 cut(s)	493, 510, 792, 1365, 1749, 2052, 2515
EaeI	YGGCCR	2 cut(s)	1654, 2686
Eam1104I	CTCTTC	1 cut(s)	1128
EarI	CTCTTC	1 cut(s)	1128
EciI	GGCGGA	1 cut(s)	1685
Eco130I	CCWWGG	2 cut(s)	1841, 2207
Eco24I	GRGCYC	4 cut(s)	823, 1063, 2051, 2330
Eco31I	GGTCTC	6 cut(s)	141, 180, 376, 670, 2441, 2508
Eco47I	GGWCC	1 cut(s)	2316
Eco81I	CCTNAGG	2 cut(s)	510, 1749
Eco88I	CYCGRG	2 cut(s)	379, 959
Eco91I	GGTNACC	1 cut(s)	497
EcoNI	CCTNNNNNAGG	2 cut(s)	717, 1002
EcoO109I	RGGNCCY	1 cut(s)	2048
EcoO65I	GGTNACC	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	1014
EcoRII	CCWGG	8 cut(s)	274, 705, 874, 997, 1003, 1204, 1231, 2497
EcoT14I	CCWWGG	2 cut(s)	1841, 2207
EcoT22I	ATGCAT	1 cut(s)	1150
EcoT38I	GRGCYC	4 cut(s)	823, 1063, 2051, 2330
ErhI	CCWWGG	2 cut(s)	1841, 2207
Esp3I	CGTCTC	1 cut(s)	2301
FalI	AAGNNNNNCTT	2 cut(s)	187, 219
FaqI	GGGAC	1 cut(s)	939
FauI	CCCGC	3 cut(s)	541, 2319, 2575
FblI	GTMKAC	1 cut(s)	1644
Fnu4HI	GCNGC	8 cut(s)	505, 546, 941, 1176, 1259, 1866, 1986, 2022
FokI	GGATG	9 cut(s)	13, 270, 1029, 1407, 1693, 1753, 1937, 1989, 2317
FriOI	GRGCYC	4 cut(s)	823, 1063, 2051, 2330
Fsp4HI	GCNGC	8 cut(s)	505, 546, 941, 1176, 1259, 1866, 1986, 2022
FspBI	CTAG	8 cut(s)	188, 456, 537, 765, 978, 984, 2163, 2307
GlaI	GCGC	1 cut(s)	2571
GluI	GCNGC	8 cut(s)	505, 546, 941, 1176, 1259, 1866, 1986, 2022
GsaI	CCCAGC	2 cut(s)	1265, 2076
GsuI	CTGGAG	7 cut(s)	150, 689, 751, 853, 954, 1113, 2242
HaeIII	GGCC	8 cut(s)	596, 1002, 1087, 1656, 2049, 2451, 2566, 2688
HapII	CCGG	2 cut(s)	1698, 2689
HhaI	GCGC	1 cut(s)	2572
Hin6I	GCGC	1 cut(s)	2570
HinP1I	GCGC	1 cut(s)	2570
HincII	GTYRAC	1 cut(s)	281
HindII	GTYRAC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	1466
HpaII	CCGG	2 cut(s)	1698, 2689
Hpy166II	GTNNAC	6 cut(s)	281, 805, 1415, 1612, 1645, 1809
Hpy8I	GTNNAC	6 cut(s)	281, 805, 1415, 1612, 1645, 1809
HpyCH4III	ACNGT	9 cut(s)	592, 930, 1115, 1609, 1813, 2295, 2385, 2556, 2595
HpyCH4IV	ACGT	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	8 cut(s)	818, 954, 1058, 1387, 1781, 2030, 2078, 2578
HpyF3I	CTNAG	7 cut(s)	493, 510, 792, 1365, 1749, 2052, 2515
HpySE526I	ACGT	1 cut(s)	301
HspAI	GCGC	1 cut(s)	2570
KpnI	GGTACC	1 cut(s)	713
KspI	CCGCGG	1 cut(s)	2315
Lsp1109I	GCAGC	8 cut(s)	516, 557, 952, 1187, 1245, 1852, 1972, 2033
LweI	GCATC	6 cut(s)	145, 558, 1157, 1345, 1429, 2011
MaeI	CTAG	8 cut(s)	188, 456, 537, 765, 978, 984, 2163, 2307
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	8 cut(s)	497, 841, 884, 1030, 1109, 1132, 1336, 2289
MboII	GAAGA	6 cut(s)	55, 153, 491, 1115, 2295, 2503
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	3 cut(s)	125, 481, 854
MhlI	GDGCHC	7 cut(s)	739, 823, 900, 1063, 1811, 2051, 2330
MlyI	GAGTC	3 cut(s)	485, 1807, 1855
MmeI	TCCRAC	1 cut(s)	277
Mph1103I	ATGCAT	1 cut(s)	1150
MslI	CAYNNNNRTG	4 cut(s)	1023, 1287, 2190, 2277
MspA1I	CMGCKG	4 cut(s)	488, 548, 1985, 2314
MspI	CCGG	2 cut(s)	1698, 2689
MspR9I	CCNGG	9 cut(s)	276, 707, 876, 999, 1005, 1206, 1233, 1699, 2499
MunI	CAATTG	1 cut(s)	516
MvaI	CCWGG	8 cut(s)	276, 707, 876, 999, 1005, 1206, 1233, 2499
MvnI	CGCG	2 cut(s)	2314, 2570
MwoI	GCNNNNNNNGC	8 cut(s)	818, 954, 1058, 1387, 1781, 2030, 2078, 2578
NciI	CCSGG	1 cut(s)	1699
NlaIV	GGNNCC	9 cut(s)	597, 711, 822, 868, 1746, 1774, 2049, 2359, 2452
NmuCI	GTSAC	6 cut(s)	497, 841, 884, 1109, 1336, 2289
NsiI	ATGCAT	1 cut(s)	1150
NspI	RCATGY	3 cut(s)	1286, 1598, 2482
PaeI	GCATGC	1 cut(s)	1598
PagI	TCATGA	1 cut(s)	2461
PaqCI	CACCTGC	2 cut(s)	1043, 2077
PciI	ACATGT	2 cut(s)	1282, 2478
PfeI	GAWTC	8 cut(s)	74, 191, 308, 1070, 1451, 2063, 2135, 2465
PflMI	CCANNNNNTGG	2 cut(s)	275, 881
PfoI	TCCNGGA	1 cut(s)	1204
PkrI	GCNGC	8 cut(s)	506, 547, 942, 1177, 1260, 1867, 1987, 2023
PleI	GAGTC	3 cut(s)	485, 1806, 1854
PpsI	GAGTC	3 cut(s)	485, 1806, 1854
PscI	ACATGT	2 cut(s)	1282, 2478
PshAI	GACNNNNGTC	1 cut(s)	495
PshBI	ATTAAT	3 cut(s)	645, 1385, 2522
PsiI	TTATAA	1 cut(s)	1757
Psp6I	CCWGG	8 cut(s)	274, 705, 874, 997, 1003, 1204, 1231, 2497
PspEI	GGTNACC	1 cut(s)	497
PspFI	CCCAGC	2 cut(s)	1261, 2072
PspGI	CCWGG	8 cut(s)	274, 705, 874, 997, 1003, 1204, 1231, 2497
PspN4I	GGNNCC	9 cut(s)	597, 711, 822, 868, 1746, 1774, 2049, 2359, 2452
PspOMI	GGGCCC	1 cut(s)	2047
PspPI	GGNCC	7 cut(s)	595, 1001, 2047, 2048, 2316, 2450, 2565
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	2 cut(s)	311, 881
PsuI	RGATCY	3 cut(s)	125, 481, 854
PvuII	CAGCTG	2 cut(s)	488, 1985
RsaI	GTAC	3 cut(s)	304, 711, 2585
RsaNI	GTAC	3 cut(s)	303, 710, 2584
RseI	CAYNNNNRTG	4 cut(s)	1023, 1287, 2190, 2277
SacII	CCGCGG	1 cut(s)	2315
SatI	GCNGC	8 cut(s)	505, 546, 941, 1176, 1259, 1866, 1986, 2022
Sau96I	GGNCC	7 cut(s)	595, 1001, 2047, 2048, 2316, 2450, 2565
SchI	GAGTC	3 cut(s)	485, 1807, 1855
ScrFI	CCNGG	9 cut(s)	276, 707, 876, 999, 1005, 1206, 1233, 1699, 2499
SduI	GDGCHC	7 cut(s)	739, 823, 900, 1063, 1811, 2051, 2330
SfaNI	GCATC	6 cut(s)	145, 558, 1157, 1345, 1429, 2011
SfcI	CTRYAG	2 cut(s)	543, 1980
Sfr303I	CCGCGG	1 cut(s)	2315
SgrBI	CCGCGG	1 cut(s)	2315
SinI	GGWCC	1 cut(s)	2316
SmiMI	CAYNNNNRTG	4 cut(s)	1023, 1287, 2190, 2277
SmlI	CTYRAG	5 cut(s)	572, 607, 1009, 1765, 2630
SmoI	CTYRAG	5 cut(s)	572, 607, 1009, 1765, 2630
SphI	GCATGC	1 cut(s)	1598
SsiI	CCGC	7 cut(s)	502, 548, 1670, 2312, 2314, 2355, 2568
SspMI	CTAG	8 cut(s)	188, 456, 537, 765, 978, 984, 2163, 2307
StyD4I	CCNGG	9 cut(s)	274, 705, 874, 997, 1003, 1204, 1231, 1697, 2497
StyI	CCWWGG	2 cut(s)	1841, 2207
TaaI	ACNGT	9 cut(s)	592, 930, 1115, 1609, 1813, 2295, 2385, 2556, 2595
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	4 cut(s)	72, 139, 178, 2485
TatI	WGTACW	1 cut(s)	2583
TfiI	GAWTC	8 cut(s)	74, 191, 308, 1070, 1451, 2063, 2135, 2465
TscAI	CASTG	5 cut(s)	568, 595, 978, 2197, 2350
TseFI	GTSAC	6 cut(s)	497, 841, 884, 1109, 1336, 2289
TseI	GCWGC	8 cut(s)	504, 545, 940, 1175, 1258, 1865, 1985, 2021
Tsp45I	GTSAC	6 cut(s)	497, 841, 884, 1109, 1336, 2289
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	5 cut(s)	568, 595, 978, 2197, 2350
Van91I	CCANNNNNTGG	2 cut(s)	275, 881
VneI	GTGCAC	1 cut(s)	1807
VpaK11BI	GGWCC	1 cut(s)	2316
VspI	ATTAAT	3 cut(s)	645, 1385, 2522
XagI	CCTNNNNNAGG	2 cut(s)	717, 1002
XapI	RAATTY	6 cut(s)	89, 651, 1014, 1168, 2119, 2392
XbaI	TCTAGA	3 cut(s)	187, 764, 2162
XceI	RCATGY	3 cut(s)	1286, 1598, 2482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1783
XmiI	GTMKAC	1 cut(s)	1644
XspI	CTAG	8 cut(s)	188, 456, 537, 765, 978, 984, 2163, 2307
Zsp2I	ATGCAT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.