Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001511

Physical Location & Seq

Genomic Coordinates Reverse (-)

2746613 .. 2749679

Gene Structure 3067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0039200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGCAGAGGCTCACATACCGTTCGCGCCATAGCTATGCTACCAAGTCCAATCAGCACCGGATCGTCAAAACCCCCGGTGGGAAGCTTGTGTATCAGACTACTAAGAAGCGAGCAAGTGGACCCAAGTGTCCTGTGACTGGAAAGAGAATCCAAGGGATTCCTCACTTGAGACCTGCTGAATATAAGAGGTCTAGACTATCAAGGAACAGGAGGACTGTGAATCGTGCCTATGGTGGTGTTCTGTCTGGTGGAGCTGTCAGAGAGAGGATAATTAGAGCCTTTTTGGTGGAAGAGCAGAAGATAGTGAAGAAGGTTTTGAAGATTCAGAAGGCCAAAGAAAGGGCAGCATCAAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009893 GO:0009987 GO:0010016 GO:0010098 GO:0010103 GO:0010229 GO:0010374 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022414 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

120

Amino Acids

13.67

Weight (kDa)

11.67

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L34e	PF01199	1 - 96	2.1e-38	Ribosomal protein L34e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63700 AT1G63700
fragaria_vesca	FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920
malus_domestica	MD01G1205500.v1.1 MD06G1085900.v1.1 MD07G1274900.v1.1
prunus_persica	Prupe.2G298100_v2.0.a1 Prupe.2G298100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1
pyrus_communis	pycom01g21500 pycom06g08220 pycom07g25100
rosa_chinensis	RchiOBHm_Chr1g0377881 RchiOBHm_Chr7g0197281
rosa_laevigata	RLG00000003944 RLG00000026489
rosa_multiflora	Rmu_co8459889.1_g000001 Rmu_sc0004491.1_g000001 Rmu_sc0004824.1_g000011 Rmu_sc0010019.1_g000003 Rmu_sc0017623.1_g000004 Rmu_sc0030897.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258510 Rroxscaffold_4G00280980
rosa_rugosa	Rorug01G0405400 Rorug07G0039200
rosa_samantha	Rh1AG426400 Rh1BG382900 Rh1CG396700 Rh1DG413900 Rh7AG164200 Rh7BG166000 Rh7CG172700 Rh7DG165400
rosa_wichuraiana	Rw1G037210 Rw7G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	184
AccII	CGCG	1 cut(s)	28
AclWI	GGATC	1 cut(s)	71
AfiI	CCNNNNNNNGG	3 cut(s)	81, 140, 342
AgsI	TTSAA	1 cut(s)	322
AluBI	AGCT	4 cut(s)	36, 88, 257, 360
AluI	AGCT	4 cut(s)	36, 88, 257, 360
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	76, 154
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 140, 342
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	76, 154
BseLI	CCNNNNNNNGG	3 cut(s)	81, 140, 342
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	61, 78
BslI	CCNNNNNNNGG	3 cut(s)	81, 140, 342
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	335
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	76, 154
BssMI	GATC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	23, 220
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	76
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	335
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	122
CviJI	RGCY	7 cut(s)	13, 36, 88, 257, 281, 335, 360
CviKI_1	RGCY	7 cut(s)	13, 36, 88, 257, 281, 335, 360
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaiI	YATR	5 cut(s)	19, 33, 39, 186, 234
Fnu4HI	GCNGC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	2 cut(s)	61, 78
HhaI	GCGC	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	4 cut(s)	150, 160, 223, 325
HpaII	CCGG	2 cut(s)	61, 78
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	99, 263, 330
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	307, 325
HpyCH4III	ACNGT	2 cut(s)	23, 220
HpyCH4V	TGCA	1 cut(s)	7
HpyF3I	CTNAG	1 cut(s)	105
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	7 cut(s)	74, 91, 126, 147, 189, 196, 234
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	4 cut(s)	305, 313, 322, 334
MluCI	AATT	1 cut(s)	273
MnlI	CCTC	5 cut(s)	3, 174, 183, 207, 261
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	2 cut(s)	61, 78
MspR9I	CCNGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	28
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	4 cut(s)	150, 160, 223, 325
PkrI	GCNGC	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	288
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	7 cut(s)	38, 90, 178, 194, 259, 318, 362
SfaNI	GCATC	1 cut(s)	359
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	23, 220
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	4 cut(s)	150, 160, 223, 325
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.