Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001511

Physical Location & Seq

Genomic Coordinates Forward (+)

14589935 .. 14595356

Gene Structure 5422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGCCTTCGTGGTGGAGAAAGTCTTCATCCAAAGAAGTAAAGAAGAAAGCAAATAAGGAGAGTTTCATTGATACCATAATGACTATACACCGAAAACTTAAGAGTTCTTCTGAAGAAAAGTTTAACAGTAGTTCAGGGGGTTCTAGGAGACGATGTACTGACACCGTTTCAGAAATGGGTTCTCAATCCAGGGCTTTGTCACCATTAACATCGACACAAGTATCACGCTGTCAAAGTTTTGCAGAGAGGCCTCATGCCCAACCACTACCTCTTCCTAGAGTGCAACTTTCCAACATTGGGCGTTCTGACTCTGCTGTAACGGCATCATCAAAAACCGGGTCTGATACAGGGCCCAAGCAATTGCTCTATGTGCCCCTTTCAAGCCCTGGCCGTATCTTGAGCAGGGCAGTACCTGCAGATGCGGACGGTGATATAGCCACTGCTTCCATATCTAGTGATAGTTCTATTGATAGTGATGACCCACCTGACTCACGTCTCCTTAGTCCCATGGCCTCTGACTGCGAATATGGCACCAGAACAACTCTGAACAGTCCTTCCAGGGTAATGCAAAAGGACCAATTCCCTAATGTCAACCAAACGAACACAAAAGAGACTTTGAAGCCGGCTAATCTTCTATTCAATAATCAGTTTATGACCACATCACCAAAACGGGGACCTTCAAGGACACATTTGCAGAACATACAAATTCCTTACAATGGTGCTTTCTCTAGTGCTCCAGACAGCTCCATGTCAAGTCCTTCTAGAAGTCCTATGAGAGTGTTTGGCTCTGATCAAGTTCTGATCTCCAGTTTCTGGGCAGGAAAGCCTTATCCCGATATAGCTTCTACCCACTGCTCCAGTCCAGGCTCAGGTCATAATTCCGGACATAATTCGGTCGGAGGGGATCTGTCAGCACAGCTTTTTTGGCAGCAGAACAGGTGTAGCCCCGAGTGTTCTCCAATACCTAGTCCCAGAATGACCAGTCCTGGCCCAAGCTCCAGAATGACCAGTCCTGGCCCCAGCTCCAGAATACAAAGTGCTGCAGTTACCCCTCTGCACCCACGAGCTGGAGGGCCAGCCATGGAGTCACCTACAAGCCGACCCGATGATGGGAAGCAGAAAAGCCACCGATTACCACTTCCTCCAATAACAACAACTAGGACCTGTCCTTTTTCTCCTGCTTATTCACCTGCAACAACTCCCACAGTTCCTCGCAGTCCTGGTAGGGCAGAAAATCCACAAAGTCCTGGTTCACGCTGGAAGAAGGGGCGTCTGCTTGGGAGGGGTACATTTGGACATGTGTATCTTGGTTTTAACAGTGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTATTTGCAGATGATGCAAAGTCAAAGGAAAGTGCACAGCAGCTTGGGCAAGAAATTTCTTTGCTAAGTCGACTACAACATCCAAATATAGTGCAGTATTTAGGATCTGAGACGGTAGACGATAAACTCTACATATACTTGGAGTATGTGTCTGGTGGATCCATCTATAAACTGCTTCAAGAGTACGGTCAGTTTGGTGAAATAGCAATTCGTAGTTATACTCAACAAATCTTGTCAGGGCTTTCGTACTTGCATGCGAAAAACACTCTCCACAGGGATATCAAAGGAGCAAATATATTAGTAGATCCCAATGGTCGGGTAAAGTTGGCAGATTTTGGGATGGCAAAGCATATTACTGGGGAGTCTTGTCCGTTATCCTTCAAGGGGAGCCCATATTGGATGGCACCAGAGGTTATCAAGAATTCAAATGGTTGTAATCTTGCGGTTGATATATGGAGCCTGGGTTGCACTGTTCTTGAGATGGCCACGACAAAACCACCTTGGAGCCAATATGAAGGGGTTGCTGCTATGTTTAAGATAGGAAACAGCAAGGAACTTCCTGGAATTCCTGGACATCTTTCAGAGGATGGGAAGGACTTTGTTAGGCTGTGTTTGCAACGTAACCCACTGCATCGTCCTACAGCTGCTCAGCTTTTGGAGCATCCTTTTGTTAAGAATGTTGCTCCACTGGAAAGACCCATTATGAGTTTGGATCCTTCTGAAGGACCACCTGCGGTGACGAATGCAGTGAGATCTCAGGCCTTTGGACATGGGAGAAATAATTTGCACTTAGACTCTGAAGGGATGACTATTCACCAGTCCAGAGGCTCAAGAACTGGATCAGCATCAAGACATGTCCACACACCAAGAAATGTGTCTTGCCCAGTTTCACCCATTGGAAGCCCACTTCTCCAGTCTAGATCACCACAACATGTCAGTGGAAGGATGTCTCCCTCTCCCATATCTAGCCCCCGTATCACATCCGGTGCATCTACACCTCTCACTGGTGGTGGTGGTGCAAGCCCTTTTCAACACTTGAAGCCACCAACAACCTACTTACATGAAGGCACACAGATGACCCAGAGATCCCAGAACAGTAGTTTCTATACAAATGGCAGCATGCGATATCATGAGCCAAAGCCTGATCTATTTCGAGGGATTCCGCAGGCCTCTCATGATTTCCGGGATATAATTTCATCTGACAATGTTGCGCACAGAGACCAGTTTTGGAAGCCTGTTCCTGGGCAGCAAAGAGAGTTCTGTGATGTGCAGTCGGTTTTGGCTGACTGTGTGTCTCAGCAGCTCTTAATGGATCATATGAAGCTGAACCCATCCATGGACCTAAATCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009893 GO:0009987 GO:0010016 GO:0010098 GO:0010103 GO:0010229 GO:0010374 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022414 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

903

Amino Acids

98.24

Weight (kDa)

9.3

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	421 - 676	2.6e-70	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	423 - 672	4.9e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63700 AT1G63700
fragaria_vesca	FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920
malus_domestica	MD01G1205500.v1.1 MD06G1085900.v1.1 MD07G1274900.v1.1
prunus_persica	Prupe.2G298100_v2.0.a1 Prupe.2G298100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1
pyrus_communis	pycom01g21500 pycom06g08220 pycom07g25100
rosa_chinensis	RchiOBHm_Chr1g0377881 RchiOBHm_Chr7g0197281
rosa_laevigata	RLG00000003944 RLG00000026489
rosa_multiflora	Rmu_co8459889.1_g000001 Rmu_sc0004491.1_g000001 Rmu_sc0004824.1_g000011 Rmu_sc0010019.1_g000003 Rmu_sc0017623.1_g000004 Rmu_sc0030897.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258510 Rroxscaffold_4G00280980
rosa_rugosa	Rorug01G0405400 Rorug07G0039200
rosa_samantha	Rh1AG426400 Rh1BG382900 Rh1CG396700 Rh1DG413900 Rh7AG164200 Rh7BG166000 Rh7CG172700 Rh7DG165400
rosa_wichuraiana	Rw1G037210 Rw7G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1198, 2095
Acc16I	TGCGCA	1 cut(s)	2568
Acc36I	ACCTGC	3 cut(s)	421, 1198, 2095
AccB1I	GGYRCC	2 cut(s)	530, 1759
AccB7I	CCANNNNNTGG	2 cut(s)	813, 1067
AccI	GTMKAC	2 cut(s)	1426, 1473
AccIII	TCCGGA	1 cut(s)	881
AciI	CCGC	4 cut(s)	422, 1799, 2090, 2519
AcoI	YGGCCR	2 cut(s)	388, 1839
AcsI	RAATTY	4 cut(s)	705, 1410, 1777, 1920
AcuI	CTGAAG	3 cut(s)	132, 2097, 2175
AcyI	GRCGYC	1 cut(s)	1270
AfaI	GTAC	5 cut(s)	157, 411, 1288, 1541, 1604
AflII	CTTAAG	1 cut(s)	98
AflIII	ACRYGT	3 cut(s)	1297, 2209, 2287
AgsI	TTSAA	9 cut(s)	381, 619, 640, 681, 1535, 1738, 1782, 2387, 2395
AhdI	GACNNNNNGTC	1 cut(s)	2647
AjiI	CACGTC	1 cut(s)	494
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
Alw21I	GWGCWC	2 cut(s)	736, 1393
Alw26I	GTCTC	7 cut(s)	142, 500, 605, 1460, 2310, 2568, 2655
Alw44I	GTGCAC	1 cut(s)	1389
AlwNI	CAGNNNCTG	2 cut(s)	413, 813
Ama87I	CYCGRG	1 cut(s)	947
Aor13HI	TCCGGA	1 cut(s)	881
ApaI	GGGCCC	1 cut(s)	354
ApaLI	GTGCAC	1 cut(s)	1389
ApeKI	GCWGC	8 cut(s)	928, 1040, 1396, 1880, 2000, 2472, 2602, 2656
ApoI	RAATTY	4 cut(s)	705, 1410, 1777, 1920
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp700I	GAANNNNTTC	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	2569
AsuC2I	CCSGG	2 cut(s)	337, 2540
AvaI	CYCGRG	1 cut(s)	947
AvaII	GGWCC	5 cut(s)	574, 674, 1161, 2081, 2695
BaeGI	GKGCMC	3 cut(s)	354, 375, 1393
BaeI	ACNNNNGTAYC	4 cut(s)	204, 237, 1286, 1319
BalI	TGGCCA	1 cut(s)	1841
BamHI	GGATCC	2 cut(s)	1514, 2068
BanI	GGYRCC	2 cut(s)	530, 1759
BanII	GRGCYC	2 cut(s)	354, 1748
BauI	CACGAG	1 cut(s)	1062
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	736, 1393
BbvI	GCAGC	8 cut(s)	940, 1027, 1408, 1867, 1987, 2484, 2614, 2668
BccI	CCATC	7 cut(s)	1103, 1526, 1690, 1750, 1831, 1937, 2695
BceAI	ACGGC	2 cut(s)	336, 375
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	2 cut(s)	337, 2540
BcoDI	GTCTC	7 cut(s)	142, 500, 605, 1460, 2310, 2568, 2655
BfmI	CTRYAG	3 cut(s)	414, 1041, 1995
BfrI	CTTAAG	1 cut(s)	98
BfuAI	ACCTGC	3 cut(s)	421, 1198, 2095
BglII	AGATCT	1 cut(s)	2108
BisI	GCNGC	8 cut(s)	929, 1041, 1397, 1881, 2001, 2473, 2603, 2657
BlpI	GCTNAGC	1 cut(s)	2004
BlsI	GCNGC	8 cut(s)	930, 1042, 1398, 1882, 2002, 2474, 2604, 2658
Bme18I	GGWCC	5 cut(s)	574, 674, 1161, 2081, 2695
BmeRI	GACNNNNNGTC	1 cut(s)	2647
BmeT110I	CYCGRG	1 cut(s)	947
BmgBI	CACGTC	1 cut(s)	494
BmrI	ACTGGG	2 cut(s)	1722, 2234
BmsI	GCATC	7 cut(s)	332, 409, 1360, 1996, 2026, 2210, 2354
BmuI	ACTGGG	2 cut(s)	1722, 2234
BoxI	GACNNNNGTC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	7 cut(s)	720, 790, 841, 982, 1009, 1089, 2252
Bpu10I	CCTNAGC	1 cut(s)	868
Bpu1102I	GCTNAGC	1 cut(s)	2004
BpuEI	CTTGAG	3 cut(s)	418, 1853, 2170
BpuMI	CCSGG	2 cut(s)	337, 2540
BsaBI	GATNNNNATC	1 cut(s)	2200
BsaHI	GRCGYC	1 cut(s)	1270
BsaI	GGTCTC	1 cut(s)	2568
BsaJI	CCNNGG	9 cut(s)	189, 385, 507, 558, 1080, 1816, 1856, 2597, 2691
BsaWI	WCCGGW	2 cut(s)	881, 2339
BsaXI	ACNNNNNCTCC	6 cut(s)	139, 169, 1490, 1520, 1804, 1834
Bse118I	RCCGGY	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	1347
Bse8I	GATNNNNATC	1 cut(s)	2200
BseAI	TCCGGA	1 cut(s)	881
BseDI	CCNNGG	9 cut(s)	189, 385, 507, 558, 1080, 1816, 1856, 2597, 2691
BseJI	GATNNNNATC	1 cut(s)	2200
BseMI	GCAATG	1 cut(s)	1347
BseMII	CTCAG	5 cut(s)	882, 1455, 2018, 2126, 2666
BseSI	GKGCMC	3 cut(s)	354, 375, 1393
BseXI	GCAGC	8 cut(s)	940, 1027, 1408, 1867, 1987, 2484, 2614, 2668
BseYI	CCCAGC	1 cut(s)	1019
BsgI	GTGCAG	3 cut(s)	1040, 1469, 2645
Bsh1285I	CGRYCG	1 cut(s)	897
BshNI	GGYRCC	2 cut(s)	530, 1759
BsiEI	CGRYCG	1 cut(s)	897
BsiHKAI	GWGCWC	2 cut(s)	736, 1393
BsiHKCI	CYCGRG	1 cut(s)	947
BsiSI	CCGG	5 cut(s)	336, 623, 882, 2340, 2539
BslFI	GGGAC	3 cut(s)	489, 687, 954
BsmAI	GTCTC	7 cut(s)	142, 500, 605, 1460, 2310, 2568, 2655
BsmBI	CGTCTC	3 cut(s)	142, 500, 1460
BsmFI	GGGAC	3 cut(s)	489, 687, 954
BsmI	GAATGC	1 cut(s)	2104
Bso31I	GGTCTC	1 cut(s)	2568
BsoBI	CYCGRG	1 cut(s)	947
Bsp120I	GGGCCC	1 cut(s)	350
Bsp1286I	GDGCHC	5 cut(s)	354, 375, 736, 1393, 1748
Bsp13I	TCCGGA	1 cut(s)	881
Bsp1720I	GCTNAGC	1 cut(s)	2004
Bsp19I	CCATGG	3 cut(s)	507, 1080, 2691
BspACI	CCGC	4 cut(s)	422, 1799, 2090, 2519
BspCNI	CTCAG	5 cut(s)	881, 1456, 2017, 2125, 2665
BspEI	TCCGGA	1 cut(s)	881
BspHI	TCATGA	2 cut(s)	2485, 2530
BspMAI	CTGCAG	2 cut(s)	418, 1045
BspMI	ACCTGC	3 cut(s)	421, 1198, 2095
BspT107I	GGYRCC	2 cut(s)	530, 1759
BspTI	CTTAAG	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	2568
BsrDI	GCAATG	1 cut(s)	1347
BsrFI	RCCGGY	1 cut(s)	622
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	9 cut(s)	189, 385, 507, 558, 1080, 1816, 1856, 2597, 2691
BssNI	GRCGYC	1 cut(s)	1270
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	4 cut(s)	507, 1080, 1856, 2691
Bst2BI	CACGAG	1 cut(s)	1062
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	1270
BstAFI	CTTAAG	1 cut(s)	98
BstAPI	GCANNNNNTGC	2 cut(s)	413, 1370
BstC8I	GCNNGC	6 cut(s)	624, 1077, 1611, 2377, 2477, 2523
BstDEI	CTNAG	8 cut(s)	500, 868, 1421, 1464, 2004, 2112, 2146, 2652
BstDSI	CCRYGG	3 cut(s)	507, 1080, 2691
BstENI	CCTNNNNNAGG	1 cut(s)	2076
BstHHI	GCGC	1 cut(s)	2569
BstMAI	GTCTC	7 cut(s)	142, 500, 605, 1460, 2310, 2568, 2655
BstMCI	CGRYCG	1 cut(s)	897
BstNSI	RCATGY	5 cut(s)	1301, 1613, 2213, 2291, 2479
BstPAI	GACNNNNGTC	1 cut(s)	492
BstSFI	CTRYAG	3 cut(s)	414, 1041, 1995
BstSLI	GKGCMC	3 cut(s)	354, 375, 1393
BstV1I	GCAGC	8 cut(s)	940, 1027, 1408, 1867, 1987, 2484, 2614, 2668
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	7 cut(s)	904, 1460, 1514, 1660, 2068, 2108, 2441
BstYI	RGATCY	7 cut(s)	904, 1460, 1514, 1660, 2068, 2108, 2441
BtgI	CCRYGG	3 cut(s)	507, 1080, 2691
BtrI	CACGTC	1 cut(s)	494
BtsI	GCAGTG	4 cut(s)	438, 850, 1982, 2109
BtsIMutI	CAGTG	9 cut(s)	438, 850, 1324, 1824, 1982, 2042, 2109, 2299, 2358
BveI	ACCTGC	3 cut(s)	421, 1198, 2095
Cac8I	GCNNGC	6 cut(s)	624, 1077, 1611, 2377, 2477, 2523
CaiI	CAGNNNCTG	2 cut(s)	413, 813
CciI	TCATGA	2 cut(s)	2485, 2530
CfoI	GCGC	1 cut(s)	2569
Cfr10I	RCCGGY	1 cut(s)	622
CseI	GACGC	1 cut(s)	1259
Csp6I	GTAC	5 cut(s)	156, 410, 1287, 1540, 1603
CviQI	GTAC	5 cut(s)	156, 410, 1287, 1540, 1603
DdeI	CTNAG	8 cut(s)	500, 868, 1421, 1464, 2004, 2112, 2146, 2652
DriI	GACNNNNNGTC	1 cut(s)	2647
EaeI	YGGCCR	2 cut(s)	388, 1839
Eam1104I	CTCTTC	1 cut(s)	276
Eam1105I	GACNNNNNGTC	1 cut(s)	2647
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	4 cut(s)	507, 1080, 1856, 2691
Eco147I	AGGCCT	3 cut(s)	250, 2117, 2525
Eco24I	GRGCYC	2 cut(s)	354, 1748
Eco31I	GGTCTC	1 cut(s)	2568
Eco32I	GATATC	2 cut(s)	1636, 2483
Eco47I	GGWCC	5 cut(s)	574, 674, 1161, 2081, 2695
Eco57I	CTGAAG	3 cut(s)	132, 2097, 2175
Eco88I	CYCGRG	1 cut(s)	947
EcoNI	CCTNNNNNAGG	1 cut(s)	2076
EcoO109I	RGGNCCY	3 cut(s)	350, 674, 1161
EcoRI	GAATTC	2 cut(s)	1777, 1920
EcoRV	GATATC	2 cut(s)	1636, 2483
EcoT14I	CCWWGG	4 cut(s)	507, 1080, 1856, 2691
EcoT38I	GRGCYC	2 cut(s)	354, 1748
ErhI	CCWWGG	4 cut(s)	507, 1080, 1856, 2691
Esp3I	CGTCTC	3 cut(s)	142, 500, 1460
FaqI	GGGAC	3 cut(s)	489, 687, 954
FauNDI	CATATG	1 cut(s)	2673
FbaI	TGATCA	1 cut(s)	790
FblI	GTMKAC	2 cut(s)	1426, 1473
Fnu4HI	GCNGC	8 cut(s)	929, 1041, 1397, 1881, 2001, 2473, 2603, 2657
FriOI	GRGCYC	2 cut(s)	354, 1748
Fsp4HI	GCNGC	8 cut(s)	929, 1041, 1397, 1881, 2001, 2473, 2603, 2657
FspI	TGCGCA	1 cut(s)	2568
GlaI	GCGC	1 cut(s)	2568
GluI	GCNGC	8 cut(s)	929, 1041, 1397, 1881, 2001, 2473, 2603, 2657
GsaI	CCCAGC	1 cut(s)	1023
GsuI	CTGGAG	7 cut(s)	720, 790, 841, 982, 1009, 1089, 2252
HapII	CCGG	5 cut(s)	336, 623, 882, 2340, 2539
HgaI	GACGC	1 cut(s)	1259
HhaI	GCGC	1 cut(s)	2569
Hin1I	GRCGYC	1 cut(s)	1270
Hin6I	GCGC	1 cut(s)	2567
HinP1I	GCGC	1 cut(s)	2567
HincII	GTYRAC	2 cut(s)	592, 1427
HindII	GTYRAC	2 cut(s)	592, 1427
HinfI	GANTC	6 cut(s)	308, 488, 1085, 1718, 2150, 2515
HpaII	CCGG	5 cut(s)	336, 623, 882, 2340, 2539
Hpy166II	GTNNAC	6 cut(s)	592, 1253, 1391, 1427, 1474, 2215
Hpy8I	GTNNAC	6 cut(s)	592, 1253, 1391, 1427, 1474, 2215
HpyCH4IV	ACGT	2 cut(s)	493, 1975
HpyF3I	CTNAG	8 cut(s)	500, 868, 1421, 1464, 2004, 2112, 2146, 2652
HpySE526I	ACGT	2 cut(s)	493, 1975
Hsp92I	GRCGYC	1 cut(s)	1270
HspAI	GCGC	1 cut(s)	2567
Kpn2I	TCCGGA	1 cut(s)	881
KroI	GCCGGC	1 cut(s)	622
KroNI	GCCGGC	1 cut(s)	624
Ksp22I	TGATCA	1 cut(s)	790
Lsp1109I	GCAGC	8 cut(s)	940, 1027, 1408, 1867, 1987, 2484, 2614, 2668
LweI	GCATC	7 cut(s)	332, 409, 1360, 1996, 2026, 2210, 2354
MaeII	ACGT	2 cut(s)	493, 1975
MaeIII	GTNAC	7 cut(s)	198, 316, 1045, 1086, 1351, 1976, 2092
MboII	GAAGA	8 cut(s)	15, 55, 99, 125, 263, 623, 1273, 2696
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	7 cut(s)	904, 1460, 1514, 1660, 2068, 2108, 2441
MhlI	GDGCHC	5 cut(s)	354, 375, 736, 1393, 1748
MlsI	TGGCCA	1 cut(s)	1841
MluNI	TGGCCA	1 cut(s)	1841
MlyI	GAGTC	5 cut(s)	302, 482, 1094, 1727, 2144
MmeI	TCCRAC	2 cut(s)	315, 877
Mox20I	TGGCCA	1 cut(s)	1841
MroI	TCCGGA	1 cut(s)	881
MroNI	GCCGGC	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	22
MscI	TGGCCA	1 cut(s)	1841
MseI	TTAA	7 cut(s)	99, 123, 206, 1314, 1890, 2028, 2663
MslI	CAYNNNNRTG	2 cut(s)	2292, 2429
Msp20I	TGGCCA	1 cut(s)	1841
MspA1I	CMGCKG	1 cut(s)	2000
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	5 cut(s)	336, 623, 882, 2340, 2539
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	2104
NaeI	GCCGGC	1 cut(s)	624
NciI	CCSGG	2 cut(s)	337, 2540
NcoI	CCATGG	3 cut(s)	507, 1080, 2691
NdeI	CATATG	1 cut(s)	2673
NgoMIV	GCCGGC	1 cut(s)	622
NmuCI	GTSAC	3 cut(s)	198, 1086, 2092
NsbI	TGCGCA	1 cut(s)	2568
NspI	RCATGY	5 cut(s)	1301, 1613, 2213, 2291, 2479
PaeI	GCATGC	2 cut(s)	1613, 2479
PagI	TCATGA	2 cut(s)	2485, 2530
PaqCI	CACCTGC	2 cut(s)	1198, 2095
PceI	AGGCCT	3 cut(s)	250, 2117, 2525
PciI	ACATGT	3 cut(s)	1297, 2209, 2287
PctI	GAATGC	1 cut(s)	2104
PdiI	GCCGGC	1 cut(s)	624
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	2515
PflMI	CCANNNNNTGG	2 cut(s)	813, 1067
PfoI	TCCNGGA	3 cut(s)	1915, 1924, 2538
PkrI	GCNGC	8 cut(s)	930, 1042, 1398, 1882, 2002, 2474, 2604, 2658
PleI	GAGTC	5 cut(s)	302, 482, 1093, 1726, 2144
PpsI	GAGTC	5 cut(s)	302, 482, 1093, 1726, 2144
PpuMI	RGGWCCY	2 cut(s)	674, 1161
PscI	ACATGT	3 cut(s)	1297, 2209, 2287
PshAI	GACNNNNGTC	1 cut(s)	492
Psp5II	RGGWCCY	2 cut(s)	674, 1161
PspFI	CCCAGC	1 cut(s)	1019
PspOMI	GGGCCC	1 cut(s)	350
PspPPI	RGGWCCY	2 cut(s)	674, 1161
PstI	CTGCAG	2 cut(s)	418, 1045
PstNI	CAGNNNCTG	2 cut(s)	413, 813
PsuI	RGATCY	7 cut(s)	904, 1460, 1514, 1660, 2068, 2108, 2441
PvuII	CAGCTG	1 cut(s)	2000
RsaI	GTAC	5 cut(s)	157, 411, 1288, 1541, 1604
RsaNI	GTAC	5 cut(s)	156, 410, 1287, 1540, 1603
RseI	CAYNNNNRTG	2 cut(s)	2292, 2429
SalI	GTCGAC	1 cut(s)	1425
SaqAI	TTAA	7 cut(s)	99, 123, 206, 1314, 1890, 2028, 2663
SatI	GCNGC	8 cut(s)	929, 1041, 1397, 1881, 2001, 2473, 2603, 2657
SchI	GAGTC	5 cut(s)	302, 482, 1094, 1727, 2144
SduI	GDGCHC	5 cut(s)	354, 375, 736, 1393, 1748
SfaNI	GCATC	7 cut(s)	332, 409, 1360, 1996, 2026, 2210, 2354
SfcI	CTRYAG	3 cut(s)	414, 1041, 1995
SinI	GGWCC	5 cut(s)	574, 674, 1161, 2081, 2695
SmiMI	CAYNNNNRTG	2 cut(s)	2292, 2429
SmlI	CTYRAG	4 cut(s)	98, 397, 1832, 2185
SmoI	CTYRAG	4 cut(s)	98, 397, 1832, 2185
SphI	GCATGC	2 cut(s)	1613, 2479
SseBI	AGGCCT	3 cut(s)	250, 2117, 2525
SsiI	CCGC	4 cut(s)	422, 1799, 2090, 2519
StuI	AGGCCT	3 cut(s)	250, 2117, 2525
StyI	CCWWGG	4 cut(s)	507, 1080, 1856, 2691
TaiI	ACGT	2 cut(s)	496, 1978
TaqI	TCGA	3 cut(s)	212, 1426, 2509
TaqII	GACCGA	1 cut(s)	883
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	2515
Tru1I	TTAA	7 cut(s)	99, 123, 206, 1314, 1890, 2028, 2663
Tru9I	TTAA	7 cut(s)	99, 123, 206, 1314, 1890, 2028, 2663
TscAI	CASTG	9 cut(s)	445, 857, 1324, 1831, 1989, 2049, 2109, 2299, 2365
TseFI	GTSAC	3 cut(s)	198, 1086, 2092
TseI	GCWGC	8 cut(s)	928, 1040, 1396, 1880, 2000, 2472, 2602, 2656
Tsp45I	GTSAC	3 cut(s)	198, 1086, 2092
TspDTI	ATGAA	7 cut(s)	15, 55, 1358, 1884, 2433, 2541, 2690
TspGWI	ACGGA	1 cut(s)	1716
TspRI	CASTG	9 cut(s)	445, 857, 1324, 1831, 1989, 2049, 2109, 2299, 2365
Van91I	CCANNNNNTGG	2 cut(s)	813, 1067
Vha464I	CTTAAG	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	1389
VpaK11BI	GGWCC	5 cut(s)	574, 674, 1161, 2081, 2695
XagI	CCTNNNNNAGG	1 cut(s)	2076
XapI	RAATTY	4 cut(s)	705, 1410, 1777, 1920
XbaI	TCTAGA	2 cut(s)	761, 2273
XceI	RCATGY	5 cut(s)	1301, 1613, 2213, 2291, 2479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2062
XmiI	GTMKAC	2 cut(s)	1426, 1473
XmnI	GAANNNNTTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.