Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001511

Physical Location & Seq

Genomic Coordinates Reverse (-)

52932192 .. 52939325

Gene Structure 7134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00258510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2661 bp

ATGCCTTCGTGGTGGAGAAAGTCTTCATCCAAAGAAGTAAAGAAGAAAGCAAATAAGGAGAGTTTCATTGATACCATAATGACTATACACCGAAAACTTAAGAGTTCTTCTGAAGAAAAGTTTAACAGTAGTTCAGGGGGTTCTAGGAGAAGATGTACTGACACTGTTTCAGAAATGGGTTCTCAATCCAGGGCTTTGTCACCATTAACCTCGACACAAGTATCACGCTGTCAAAGTTTTGCAGAGAGGCCTCATGCCCAACCACTACCTCTTCCTAGGGTGCAACTTTCCAACATTGGGCGTTCTGACTCTGCTGTAACTGCATCATCAAAAACCAGGTCTGATACAGGGCCCAAGCAATTGCTCTATGTACCCCTTTCAAGCCCTGGCCGTATCTTGAGTAGGGCAGTACCTGCAGATGCGGACGGTGATATAGCCACTGCTTCCATATCTAGTGATAGTTCTATTGATAGTGATGACCCACCTGACTCACATCTCCTTAGTCCCATGGCCTCTGACTGCGAATATGGCACCAGAACAACTCTGAACAGTCCATCCAGGGTAATGCAAAAGGACCAGTTCCCTAATGTCAACCAAAAGAACACAAAAGAGACTTTGAAGCCAGCTAATCTTCTATTCAATAATCAGATTATGACCACATCACCAAAACAGGGACCTTCAAGGACACATTTGCAGAACATACAAATTCCTTACAATGGTGCTTTCTCTAGTGCTCCAGACAGCTCCATGTCAAGTCCTTCTAGAAGTCCTATGAGAGTGTTTGGCTCTGATCAAGTTCTGATCTCCAGTTTCTGGGCAGGAAAGCCTTATCCCGATATAGCTTCTACCCACTGCTCCAGTCCAGGCTCAGGTCATAATTCCGGACATAATTCGGTCGGAGGGGATCTGTCAGCACAGCTTTTTTGGCAGCAGAACAGGTGTAGCCCCGAGTGTTCTCCAATACCTAGTCCCAGAATGACCAGTCCTGGCCCAAGCTCCAGAATGACCAGTCCTGGTCCCAGCTCCAGAATACAAAGTGCTGCAGTTACCCCTCTGCACCCACGAGCTGGAGGGCCAGCCATGGAGTCACCTACAAGCCGACCTGATGATGGGAAGCAGAAAAGCCACCGATTACCACTTCCTCCAATAACAACAACTAGGATCTGTCCTTTTTCTCCTGCTTATTCACCTGCTTATTCACCTGCAACAACTCCCACAGTTCCTCGCAGTCCTGGTAGGGCAGAAAATCCACAAAGTCCTGGTTCACGCTGGAAGAAGGGGCGCCTGCTTGGGAGGGGTACATTTGGACATGTGTATCTTGGTTTTAACAGTGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTATTTGCAGATGATGCAAAGTCAAAGGAAAGTGCACAGCAGCTTGGGCAAGTAGACGATAAACTCTACATATACTTGGAGTATGTGTCTGGTGGATCCATCTATAAACTGCTTCAAGAATACGGTCAGTTTGGTGAAATAGCAATTCGTAGTTATACTCAACAAATCTTGTCAGGGCTTTCATACTTGCACGCGAAAAACACTCTCCACAGGGATATCAAAGGAGCAAATATATTAGTAGATCCCAATGGTCGGGTAAAGTTGGCAGATTTTGGGATGGCAAAGCATATTACTGGGGAGTCTTGTCCGTTATCCTTTAAGGGGAGCCCATATTGGATGGCACCAGAGGTTATCAAGAATTCAAATGGTTGTAATCTTGCGGTTGATATATGGAGCCTGGGTTGCACTGTTCTTGAGATGGCCACGACAAAACCACCTTGGAGCCAATATGAAGGGGTTGCTGCTATGTTTAAGATAGGAAACAGCAAGGAACTTCCTGGAATTCCTGGACATCTTTCAGAGGATGGGAAGGACTTTGTTAGGCTGTGTTTGCAACGTAATCCACTGCATCGTCCTACAGCTGCTCAGCTTTTGGAGCATCCTTTTGTTAAGAATGTTGCTCCACTGGAAAGACCCATTATGAGTTTGGATCCTTCTGAAGGACCACCTGCGGTGACGAATGCAGTGAGATCTCAGGCCTTTGGACATGGGAGAAATAATTTGCACTTAGACTCTGAAGGGATGACTATTCACCAGTCCAGAGGCTCAAGAACTGGATCAGCATCAAGACATGTCCACACACCAAGAAATGTGTCTTGCCCAGTTTCACCCATTGGAAGCCCACTTCTCCAGTCGAGATCACCACAACATGTCAGTGGAAGGATGTCTCCCTCTCCCATATCTAGCCCCCGTATCACATCCGGTGCATCTACACCTCTCACTGGTGGTGGTGGTGCAATCCCTTTTCAACACTTGAAGCCACCAACAACCTACTTACATGAAGGCACACAGATGACCCAGAGATCCCAGAACAGTAGTTTCTATACAAATGGCAGCATGCGATATCATGAGCCAAAGACTGATCTATTTGGAGGGATTCCGCAGGCCTCTCATGATTTCCGGGATATAATTTCATCTGACAATGTTGCGCACAGAGACCAGTTTTGGAAGCCTGTTCCTGGGCAGCAGCGAGAGTTCTGTGATGTGCAGTCGGTTTTGGCTGACCGTGTGTCTCAGCAGCTCTTAATGGATCATATGAAGCTGAACCCATCCATGGAGCTAAATCTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009893 GO:0009987 GO:0010016 GO:0010098 GO:0010103 GO:0010229 GO:0010374 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022414 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

886

Amino Acids

96.33

Weight (kDa)

9.36

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	468 - 655	1.3e-31	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	475 - 659	1.5e-51	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63700 AT1G63700
fragaria_vesca	FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920
malus_domestica	MD01G1205500.v1.1 MD06G1085900.v1.1 MD07G1274900.v1.1
prunus_persica	Prupe.2G298100_v2.0.a1 Prupe.2G298100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1
pyrus_communis	pycom01g21500 pycom06g08220 pycom07g25100
rosa_chinensis	RchiOBHm_Chr1g0377881 RchiOBHm_Chr7g0197281
rosa_laevigata	RLG00000003944 RLG00000026489
rosa_multiflora	Rmu_co8459889.1_g000001 Rmu_sc0004491.1_g000001 Rmu_sc0004824.1_g000011 Rmu_sc0010019.1_g000003 Rmu_sc0017623.1_g000004 Rmu_sc0030897.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258510 Rroxscaffold_4G00280980
rosa_rugosa	Rorug01G0405400 Rorug07G0039200
rosa_samantha	Rh1AG426400 Rh1BG382900 Rh1CG396700 Rh1DG413900 Rh7AG164200 Rh7BG166000 Rh7CG172700 Rh7DG165400
rosa_wichuraiana	Rw1G037210 Rw7G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	1198, 1210, 2044
Acc16I	TGCGCA	1 cut(s)	2517
Acc36I	ACCTGC	4 cut(s)	421, 1198, 1210, 2044
AccB1I	GGYRCC	3 cut(s)	530, 1281, 1708
AccB7I	CCANNNNNTGG	2 cut(s)	813, 1067
AccI	GTMKAC	1 cut(s)	1422
AccII	CGCG	1 cut(s)	1562
AccIII	TCCGGA	1 cut(s)	881
AciI	CCGC	4 cut(s)	422, 1748, 2039, 2468
AcoI	YGGCCR	2 cut(s)	388, 1788
AcsI	RAATTY	3 cut(s)	705, 1726, 1869
AcuI	CTGAAG	3 cut(s)	132, 2046, 2124
AcyI	GRCGYC	1 cut(s)	1282
AfaI	GTAC	4 cut(s)	157, 372, 411, 1300
AflII	CTTAAG	1 cut(s)	98
AflIII	ACRYGT	3 cut(s)	1309, 2158, 2236
AgsI	TTSAA	8 cut(s)	381, 619, 640, 681, 1484, 1731, 2336, 2344
AhdI	GACNNNNNGTC	1 cut(s)	2596
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
Alw21I	GWGCWC	2 cut(s)	736, 1405
Alw26I	GTCTC	4 cut(s)	605, 2259, 2517, 2604
Alw44I	GTGCAC	1 cut(s)	1401
AlwNI	CAGNNNCTG	2 cut(s)	413, 813
Ama87I	CYCGRG	1 cut(s)	947
Aor13HI	TCCGGA	1 cut(s)	881
AoxI	GGCC	9 cut(s)	248, 350, 388, 510, 988, 1073, 1788, 2064, 2472
ApaI	GGGCCC	1 cut(s)	354
ApaLI	GTGCAC	1 cut(s)	1401
ApeKI	GCWGC	9 cut(s)	928, 1040, 1408, 1829, 1949, 2421, 2551, 2554, 2605
ApoI	RAATTY	3 cut(s)	705, 1726, 1869
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp700I	GAANNNNTTC	1 cut(s)	22
AspA2I	CCTAGG	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	1284, 2518
AspS9I	GGNCC	8 cut(s)	350, 351, 574, 674, 989, 1016, 1073, 2030
AsuC2I	CCSGG	1 cut(s)	2489
AvaI	CYCGRG	1 cut(s)	947
AvaII	GGWCC	4 cut(s)	574, 674, 1016, 2030
AvrII	CCTAGG	1 cut(s)	275
BaeGI	GKGCMC	2 cut(s)	354, 1405
BaeI	ACNNNNGTAYC	4 cut(s)	204, 237, 1298, 1331
BalI	TGGCCA	1 cut(s)	1790
BamHI	GGATCC	2 cut(s)	1463, 2017
BanI	GGYRCC	3 cut(s)	530, 1281, 1708
BanII	GRGCYC	2 cut(s)	354, 1697
BauI	CACGAG	1 cut(s)	1062
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	736, 1405
BbvI	GCAGC	9 cut(s)	940, 1027, 1420, 1816, 1936, 2433, 2563, 2566, 2617
BccI	CCATC	8 cut(s)	562, 1103, 1475, 1639, 1699, 1780, 1886, 2644
BceAI	ACGGC	1 cut(s)	375
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	1 cut(s)	2489
BcoDI	GTCTC	4 cut(s)	605, 2259, 2517, 2604
BfaI	CTAG	9 cut(s)	144, 276, 453, 729, 762, 966, 1158, 2271, 2659
BfmI	CTRYAG	3 cut(s)	414, 1041, 1944
BfoI	RGCGCY	1 cut(s)	1285
BfrI	CTTAAG	1 cut(s)	98
BfuAI	ACCTGC	4 cut(s)	421, 1198, 1210, 2044
BglII	AGATCT	1 cut(s)	2057
BisI	GCNGC	9 cut(s)	929, 1041, 1409, 1830, 1950, 2422, 2552, 2555, 2606
BlnI	CCTAGG	1 cut(s)	275
BlpI	GCTNAGC	1 cut(s)	1953
BlsI	GCNGC	9 cut(s)	930, 1042, 1410, 1831, 1951, 2423, 2553, 2556, 2607
Bme18I	GGWCC	4 cut(s)	574, 674, 1016, 2030
BmeRI	GACNNNNNGTC	1 cut(s)	2596
BmeT110I	CYCGRG	1 cut(s)	947
BmgT120I	GGNCC	8 cut(s)	350, 351, 574, 674, 989, 1016, 1073, 2030
BmrI	ACTGGG	2 cut(s)	1671, 2183
BmsI	GCATC	7 cut(s)	332, 409, 1372, 1945, 1975, 2159, 2303
BmuI	ACTGGG	2 cut(s)	1671, 2183
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	7 cut(s)	720, 790, 841, 982, 1009, 1089, 2201
Bpu10I	CCTNAGC	1 cut(s)	868
Bpu1102I	GCTNAGC	1 cut(s)	1953
BpuEI	CTTGAG	3 cut(s)	418, 1802, 2119
BpuMI	CCSGG	1 cut(s)	2489
BsaBI	GATNNNNATC	1 cut(s)	2149
BsaHI	GRCGYC	1 cut(s)	1282
BsaI	GGTCTC	1 cut(s)	2517
BsaWI	WCCGGW	2 cut(s)	881, 2288
BsaXI	ACNNNNNCTCC	6 cut(s)	139, 169, 1439, 1469, 1753, 1783
Bse3DI	GCAATG	1 cut(s)	1359
Bse8I	GATNNNNATC	1 cut(s)	2149
BseAI	TCCGGA	1 cut(s)	881
BseJI	GATNNNNATC	1 cut(s)	2149
BseMI	GCAATG	1 cut(s)	1359
BseMII	CTCAG	4 cut(s)	882, 1967, 2075, 2615
BseSI	GKGCMC	2 cut(s)	354, 1405
BseXI	GCAGC	9 cut(s)	940, 1027, 1420, 1816, 1936, 2433, 2563, 2566, 2617
BseYI	CCCAGC	1 cut(s)	1019
BsgI	GTGCAG	2 cut(s)	1040, 2594
Bsh1236I	CGCG	1 cut(s)	1562
Bsh1285I	CGRYCG	1 cut(s)	897
BshFI	GGCC	9 cut(s)	250, 352, 390, 512, 990, 1075, 1790, 2066, 2474
BshNI	GGYRCC	3 cut(s)	530, 1281, 1708
BsiEI	CGRYCG	1 cut(s)	897
BsiHKAI	GWGCWC	2 cut(s)	736, 1405
BsiHKCI	CYCGRG	1 cut(s)	947
BsiSI	CCGG	3 cut(s)	882, 2289, 2488
BslFI	GGGAC	4 cut(s)	489, 687, 954, 1002
BsmAI	GTCTC	4 cut(s)	605, 2259, 2517, 2604
BsmFI	GGGAC	4 cut(s)	489, 687, 954, 1002
BsmI	GAATGC	1 cut(s)	2053
BsnI	GGCC	9 cut(s)	250, 352, 390, 512, 990, 1075, 1790, 2066, 2474
Bso31I	GGTCTC	1 cut(s)	2517
BsoBI	CYCGRG	1 cut(s)	947
Bsp120I	GGGCCC	1 cut(s)	350
Bsp1286I	GDGCHC	4 cut(s)	354, 736, 1405, 1697
Bsp13I	TCCGGA	1 cut(s)	881
Bsp1720I	GCTNAGC	1 cut(s)	1953
Bsp19I	CCATGG	3 cut(s)	507, 1080, 2640
BspACI	CCGC	4 cut(s)	422, 1748, 2039, 2468
BspANI	GGCC	9 cut(s)	250, 352, 390, 512, 990, 1075, 1790, 2066, 2474
BspCNI	CTCAG	4 cut(s)	881, 1966, 2074, 2614
BspEI	TCCGGA	1 cut(s)	881
BspFNI	CGCG	1 cut(s)	1562
BspHI	TCATGA	2 cut(s)	2434, 2479
BspMAI	CTGCAG	2 cut(s)	418, 1045
BspMI	ACCTGC	4 cut(s)	421, 1198, 1210, 2044
BspT107I	GGYRCC	3 cut(s)	530, 1281, 1708
BspTI	CTTAAG	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	2517
BsrDI	GCAATG	1 cut(s)	1359
BssNI	GRCGYC	1 cut(s)	1282
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	5 cut(s)	275, 507, 1080, 1805, 2640
Bst2BI	CACGAG	1 cut(s)	1062
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	1282
BstAFI	CTTAAG	1 cut(s)	98
BstAPI	GCANNNNNTGC	2 cut(s)	413, 1382
BstC8I	GCNNGC	6 cut(s)	624, 1077, 1286, 1560, 2426, 2472
BstDEI	CTNAG	6 cut(s)	500, 868, 1953, 2061, 2095, 2601
BstDSI	CCRYGG	3 cut(s)	507, 1080, 2640
BstENI	CCTNNNNNAGG	1 cut(s)	2025
BstFNI	CGCG	1 cut(s)	1562
BstH2I	RGCGCY	1 cut(s)	1285
BstHHI	GCGC	2 cut(s)	1284, 2518
BstMAI	GTCTC	4 cut(s)	605, 2259, 2517, 2604
BstMCI	CGRYCG	1 cut(s)	897
BstMWI	GCNNNNNNNGC	9 cut(s)	320, 413, 528, 925, 1382, 1414, 1770, 1918, 1963
BstNSI	RCATGY	4 cut(s)	1313, 2162, 2240, 2428
BstSFI	CTRYAG	3 cut(s)	414, 1041, 1944
BstSLI	GKGCMC	2 cut(s)	354, 1405
BstUI	CGCG	1 cut(s)	1562
BstV1I	GCAGC	9 cut(s)	940, 1027, 1420, 1816, 1936, 2433, 2563, 2566, 2617
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	7 cut(s)	904, 1161, 1463, 1609, 2017, 2057, 2390
BstYI	RGATCY	7 cut(s)	904, 1161, 1463, 1609, 2017, 2057, 2390
BsuRI	GGCC	9 cut(s)	250, 352, 390, 512, 990, 1075, 1790, 2066, 2474
BtgI	CCRYGG	3 cut(s)	507, 1080, 2640
BtsI	GCAGTG	4 cut(s)	438, 850, 1931, 2058
BveI	ACCTGC	4 cut(s)	421, 1198, 1210, 2044
Cac8I	GCNNGC	6 cut(s)	624, 1077, 1286, 1560, 2426, 2472
CaiI	CAGNNNCTG	2 cut(s)	413, 813
CciI	TCATGA	2 cut(s)	2434, 2479
CfoI	GCGC	2 cut(s)	1284, 2518
Cfr13I	GGNCC	8 cut(s)	350, 351, 574, 674, 989, 1016, 1073, 2030
CsiI	ACCWGGT	1 cut(s)	335
Csp6I	GTAC	4 cut(s)	156, 371, 410, 1299
CviQI	GTAC	4 cut(s)	156, 371, 410, 1299
DdeI	CTNAG	6 cut(s)	500, 868, 1953, 2061, 2095, 2601
DinI	GGCGCC	1 cut(s)	1283
DriI	GACNNNNNGTC	1 cut(s)	2596
EaeI	YGGCCR	2 cut(s)	388, 1788
Eam1104I	CTCTTC	1 cut(s)	276
Eam1105I	GACNNNNNGTC	1 cut(s)	2596
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	5 cut(s)	275, 507, 1080, 1805, 2640
Eco147I	AGGCCT	3 cut(s)	250, 2066, 2474
Eco24I	GRGCYC	2 cut(s)	354, 1697
Eco31I	GGTCTC	1 cut(s)	2517
Eco32I	GATATC	2 cut(s)	1585, 2432
Eco47I	GGWCC	4 cut(s)	574, 674, 1016, 2030
Eco57I	CTGAAG	3 cut(s)	132, 2046, 2124
Eco88I	CYCGRG	1 cut(s)	947
EcoNI	CCTNNNNNAGG	1 cut(s)	2025
EcoO109I	RGGNCCY	2 cut(s)	350, 674
EcoRI	GAATTC	2 cut(s)	1726, 1869
EcoRV	GATATC	2 cut(s)	1585, 2432
EcoT14I	CCWWGG	5 cut(s)	275, 507, 1080, 1805, 2640
EcoT38I	GRGCYC	2 cut(s)	354, 1697
EgeI	GGCGCC	1 cut(s)	1283
EheI	GGCGCC	1 cut(s)	1283
ErhI	CCWWGG	5 cut(s)	275, 507, 1080, 1805, 2640
FaqI	GGGAC	4 cut(s)	489, 687, 954, 1002
FauNDI	CATATG	1 cut(s)	2622
FbaI	TGATCA	1 cut(s)	790
FblI	GTMKAC	1 cut(s)	1422
Fnu4HI	GCNGC	9 cut(s)	929, 1041, 1409, 1830, 1950, 2422, 2552, 2555, 2606
FriOI	GRGCYC	2 cut(s)	354, 1697
Fsp4HI	GCNGC	9 cut(s)	929, 1041, 1409, 1830, 1950, 2422, 2552, 2555, 2606
FspBI	CTAG	9 cut(s)	144, 276, 453, 729, 762, 966, 1158, 2271, 2659
FspI	TGCGCA	1 cut(s)	2517
GlaI	GCGC	2 cut(s)	1283, 2517
GluI	GCNGC	9 cut(s)	929, 1041, 1409, 1830, 1950, 2422, 2552, 2555, 2606
GsaI	CCCAGC	1 cut(s)	1023
GsuI	CTGGAG	7 cut(s)	720, 790, 841, 982, 1009, 1089, 2201
HaeII	RGCGCY	1 cut(s)	1285
HaeIII	GGCC	9 cut(s)	250, 352, 390, 512, 990, 1075, 1790, 2066, 2474
HapII	CCGG	3 cut(s)	882, 2289, 2488
HhaI	GCGC	2 cut(s)	1284, 2518
Hin1I	GRCGYC	1 cut(s)	1282
Hin6I	GCGC	2 cut(s)	1282, 2516
HinP1I	GCGC	2 cut(s)	1282, 2516
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	6 cut(s)	308, 488, 1085, 1667, 2099, 2464
HpaII	CCGG	3 cut(s)	882, 2289, 2488
Hpy166II	GTNNAC	5 cut(s)	592, 1265, 1403, 1423, 2164
Hpy8I	GTNNAC	5 cut(s)	592, 1265, 1403, 1423, 2164
HpyCH4IV	ACGT	1 cut(s)	1924
HpyF10VI	GCNNNNNNNGC	9 cut(s)	320, 413, 528, 925, 1382, 1414, 1770, 1918, 1963
HpyF3I	CTNAG	6 cut(s)	500, 868, 1953, 2061, 2095, 2601
HpySE526I	ACGT	1 cut(s)	1924
Hsp92I	GRCGYC	1 cut(s)	1282
HspAI	GCGC	2 cut(s)	1282, 2516
KasI	GGCGCC	1 cut(s)	1281
Kpn2I	TCCGGA	1 cut(s)	881
Ksp22I	TGATCA	1 cut(s)	790
Lsp1109I	GCAGC	9 cut(s)	940, 1027, 1420, 1816, 1936, 2433, 2563, 2566, 2617
LweI	GCATC	7 cut(s)	332, 409, 1372, 1945, 1975, 2159, 2303
MabI	ACCWGGT	1 cut(s)	335
MaeI	CTAG	9 cut(s)	144, 276, 453, 729, 762, 966, 1158, 2271, 2659
MaeII	ACGT	1 cut(s)	1924
MaeIII	GTNAC	6 cut(s)	198, 316, 1045, 1086, 1363, 2041
MboII	GAAGA	8 cut(s)	15, 55, 99, 125, 162, 263, 623, 1285
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	7 cut(s)	904, 1161, 1463, 1609, 2017, 2057, 2390
MhlI	GDGCHC	4 cut(s)	354, 736, 1405, 1697
MlsI	TGGCCA	1 cut(s)	1790
MluCI	AATT	9 cut(s)	359, 705, 877, 889, 1512, 1726, 1869, 2086, 2496
MluNI	TGGCCA	1 cut(s)	1790
Mly113I	GGCGCC	1 cut(s)	1282
MlyI	GAGTC	5 cut(s)	302, 482, 1094, 1676, 2093
MmeI	TCCRAC	2 cut(s)	315, 877
Mox20I	TGGCCA	1 cut(s)	1790
MroI	TCCGGA	1 cut(s)	881
MroXI	GAANNNNTTC	1 cut(s)	22
MscI	TGGCCA	1 cut(s)	1790
MseI	TTAA	8 cut(s)	99, 123, 206, 1326, 1686, 1839, 1977, 2612
MslI	CAYNNNNRTG	2 cut(s)	2241, 2378
Msp20I	TGGCCA	1 cut(s)	1790
MspA1I	CMGCKG	1 cut(s)	1949
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	3 cut(s)	882, 2289, 2488
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	2053
MvnI	CGCG	1 cut(s)	1562
MwoI	GCNNNNNNNGC	9 cut(s)	320, 413, 528, 925, 1382, 1414, 1770, 1918, 1963
NarI	GGCGCC	1 cut(s)	1282
NciI	CCSGG	1 cut(s)	2489
NcoI	CCATGG	3 cut(s)	507, 1080, 2640
NdeI	CATATG	1 cut(s)	2622
NmuCI	GTSAC	3 cut(s)	198, 1086, 2041
NsbI	TGCGCA	1 cut(s)	2517
NspI	RCATGY	4 cut(s)	1313, 2162, 2240, 2428
PaeI	GCATGC	1 cut(s)	2428
PagI	TCATGA	2 cut(s)	2434, 2479
PaqCI	CACCTGC	3 cut(s)	1198, 1210, 2044
PceI	AGGCCT	3 cut(s)	250, 2066, 2474
PciI	ACATGT	3 cut(s)	1309, 2158, 2236
PctI	GAATGC	1 cut(s)	2053
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	2464
PflMI	CCANNNNNTGG	2 cut(s)	813, 1067
PfoI	TCCNGGA	3 cut(s)	1864, 1873, 2487
PkrI	GCNGC	9 cut(s)	930, 1042, 1410, 1831, 1951, 2423, 2553, 2556, 2607
PleI	GAGTC	5 cut(s)	302, 482, 1093, 1675, 2093
PluTI	GGCGCC	1 cut(s)	1285
PpsI	GAGTC	5 cut(s)	302, 482, 1093, 1675, 2093
PpuMI	RGGWCCY	1 cut(s)	674
PscI	ACATGT	3 cut(s)	1309, 2158, 2236
Psp5II	RGGWCCY	1 cut(s)	674
PspFI	CCCAGC	1 cut(s)	1019
PspOMI	GGGCCC	1 cut(s)	350
PspPI	GGNCC	8 cut(s)	350, 351, 574, 674, 989, 1016, 1073, 2030
PspPPI	RGGWCCY	1 cut(s)	674
PstI	CTGCAG	2 cut(s)	418, 1045
PstNI	CAGNNNCTG	2 cut(s)	413, 813
PsuI	RGATCY	7 cut(s)	904, 1161, 1463, 1609, 2017, 2057, 2390
PvuII	CAGCTG	1 cut(s)	1949
RsaI	GTAC	4 cut(s)	157, 372, 411, 1300
RsaNI	GTAC	4 cut(s)	156, 371, 410, 1299
RseI	CAYNNNNRTG	2 cut(s)	2241, 2378
SaqAI	TTAA	8 cut(s)	99, 123, 206, 1326, 1686, 1839, 1977, 2612
SatI	GCNGC	9 cut(s)	929, 1041, 1409, 1830, 1950, 2422, 2552, 2555, 2606
Sau96I	GGNCC	8 cut(s)	350, 351, 574, 674, 989, 1016, 1073, 2030
SchI	GAGTC	5 cut(s)	302, 482, 1094, 1676, 2093
SduI	GDGCHC	4 cut(s)	354, 736, 1405, 1697
SexAI	ACCWGGT	1 cut(s)	335
SfaNI	GCATC	7 cut(s)	332, 409, 1372, 1945, 1975, 2159, 2303
SfcI	CTRYAG	3 cut(s)	414, 1041, 1944
SfoI	GGCGCC	1 cut(s)	1283
SinI	GGWCC	4 cut(s)	574, 674, 1016, 2030
SmiMI	CAYNNNNRTG	2 cut(s)	2241, 2378
SmlI	CTYRAG	4 cut(s)	98, 397, 1781, 2134
SmoI	CTYRAG	4 cut(s)	98, 397, 1781, 2134
SphI	GCATGC	1 cut(s)	2428
Sse9I	AATT	9 cut(s)	359, 705, 877, 889, 1512, 1726, 1869, 2086, 2496
SseBI	AGGCCT	3 cut(s)	250, 2066, 2474
SsiI	CCGC	4 cut(s)	422, 1748, 2039, 2468
SspDI	GGCGCC	1 cut(s)	1281
SspMI	CTAG	9 cut(s)	144, 276, 453, 729, 762, 966, 1158, 2271, 2659
StuI	AGGCCT	3 cut(s)	250, 2066, 2474
StyI	CCWWGG	5 cut(s)	275, 507, 1080, 1805, 2640
TaiI	ACGT	1 cut(s)	1927
TaqI	TCGA	2 cut(s)	212, 2222
TaqII	GACCGA	1 cut(s)	883
TasI	AATT	9 cut(s)	359, 705, 877, 889, 1512, 1726, 1869, 2086, 2496
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	2464
Tru1I	TTAA	8 cut(s)	99, 123, 206, 1326, 1686, 1839, 1977, 2612
Tru9I	TTAA	8 cut(s)	99, 123, 206, 1326, 1686, 1839, 1977, 2612
TseFI	GTSAC	3 cut(s)	198, 1086, 2041
TseI	GCWGC	9 cut(s)	928, 1040, 1408, 1829, 1949, 2421, 2551, 2554, 2605
Tsp45I	GTSAC	3 cut(s)	198, 1086, 2041
TspDTI	ATGAA	8 cut(s)	15, 55, 1370, 1539, 1833, 2382, 2490, 2639
TspGWI	ACGGA	1 cut(s)	1665
Van91I	CCANNNNNTGG	2 cut(s)	813, 1067
Vha464I	CTTAAG	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	1401
VpaK11BI	GGWCC	4 cut(s)	574, 674, 1016, 2030
XagI	CCTNNNNNAGG	1 cut(s)	2025
XapI	RAATTY	3 cut(s)	705, 1726, 1869
XbaI	TCTAGA	1 cut(s)	761
XceI	RCATGY	4 cut(s)	1313, 2162, 2240, 2428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2011
XmaJI	CCTAGG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	1422
XmnI	GAANNNNTTC	1 cut(s)	22
XspI	CTAG	9 cut(s)	144, 276, 453, 729, 762, 966, 1158, 2271, 2659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.