Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017623.1

Orthogroup ID

OG0001511

Physical Location & Seq

Genomic Coordinates Reverse (-)

15115 .. 15525

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017623.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgtctccctctcccatatctagcccccgtatcacatccggtgcatctacacctctcactggtggtggtggtgcaatcccttttcaacacttgaatccaccaacaacctacttacatgaaggcacacagatgacccagagatcccagaacagtagtttctatacaaatggcagcatgcgatatcatgagccaaagcctgatctatttcgagggattccgcaggcctctcatgatttccgggatataatttcatctgacaatgttgcgcacagagaccagttttggaagcctgttcctgggcagcaaagagagttctgtgatgtgcagtcggttttggctgaccgtgtgtctcagcagctcttaatggatcatatgaagctgaacccatccatggacctaaatcttcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009893 GO:0009987 GO:0010016 GO:0010098 GO:0010103 GO:0010229 GO:0010374 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022414 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

136

Amino Acids

15.22

Weight (kDa)

6.64

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63700 AT1G63700
fragaria_vesca	FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920
malus_domestica	MD01G1205500.v1.1 MD06G1085900.v1.1 MD07G1274900.v1.1
prunus_persica	Prupe.2G298100_v2.0.a1 Prupe.2G298100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1
pyrus_communis	pycom01g21500 pycom06g08220 pycom07g25100
rosa_chinensis	RchiOBHm_Chr1g0377881 RchiOBHm_Chr7g0197281
rosa_laevigata	RLG00000003944 RLG00000026489
rosa_multiflora	Rmu_co8459889.1_g000001 Rmu_sc0004491.1_g000001 Rmu_sc0004824.1_g000011 Rmu_sc0010019.1_g000003 Rmu_sc0017623.1_g000004 Rmu_sc0030897.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258510 Rroxscaffold_4G00280980
rosa_rugosa	Rorug01G0405400 Rorug07G0039200
rosa_samantha	Rh1AG426400 Rh1BG382900 Rh1CG396700 Rh1DG413900 Rh7AG164200 Rh7BG166000 Rh7CG172700 Rh7DG165400
rosa_wichuraiana	Rw1G037210 Rw7G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	267
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	2 cut(s)	135, 375
AfiI	CCNNNNNNNGG	3 cut(s)	59, 296, 391
AgsI	TTSAA	2 cut(s)	86, 94
AhdI	GACNNNNNGTC	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	358, 379
AluI	AGCT	2 cut(s)	358, 379
Alw26I	GTCTC	3 cut(s)	9, 267, 354
AlwI	GGATC	2 cut(s)	135, 375
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	171, 301, 355
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	394
BbvI	GCAGC	3 cut(s)	183, 313, 367
BccI	CCATC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	3 cut(s)	9, 267, 354
BfaI	CTAG	2 cut(s)	21, 409
BisI	GCNGC	3 cut(s)	172, 302, 356
BlsI	GCNGC	3 cut(s)	173, 303, 357
Bme1390I	CCNGG	2 cut(s)	239, 297
Bme18I	GGWCC	1 cut(s)	394
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	394
BmrFI	CCNGG	2 cut(s)	239, 297
BmsI	GCATC	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	296, 390
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 296, 391
Bse1I	ACTGG	2 cut(s)	64, 277
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	296, 390
BseGI	GGATG	2 cut(s)	35, 386
BseLI	CCNNNNNNNGG	3 cut(s)	59, 296, 391
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	64, 277
BseXI	GCAGC	3 cut(s)	183, 313, 367
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	39, 238
BslI	CCNNNNNNNGG	3 cut(s)	59, 296, 391
BsmAI	GTCTC	3 cut(s)	9, 267, 354
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	140, 199, 367
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	364
BspHI	TCATGA	2 cut(s)	184, 229
BspPI	GGATC	2 cut(s)	135, 375
BspTNI	GGTCTC	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	64, 277
BssECI	CCNNGG	2 cut(s)	296, 390
BssMI	GATC	3 cut(s)	140, 199, 367
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	152, 344
BstC8I	GCNNGC	2 cut(s)	176, 222
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	35, 386
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	3 cut(s)	143, 202, 370
BstMAI	GTCTC	3 cut(s)	9, 267, 354
BstMBI	GATC	3 cut(s)	140, 199, 367
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	237, 295
BstV1I	GCAGC	3 cut(s)	183, 313, 367
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	35, 386
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	176, 222
CciI	TCATGA	2 cut(s)	184, 229
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	394
CviAII	CATG	5 cut(s)	116, 175, 185, 230, 391
CviJI	RGCY	8 cut(s)	24, 190, 196, 224, 289, 338, 358, 379
CviKI_1	RGCY	8 cut(s)	24, 190, 196, 224, 289, 338, 358, 379
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	142, 201, 369
DpnII	GATC	3 cut(s)	140, 199, 367
DriI	GACNNNNNGTC	1 cut(s)	346
Eam1105I	GACNNNNNGTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	390
Eco147I	AGGCCT	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	5 cut(s)	119, 178, 188, 233, 394
FatI	CATG	5 cut(s)	115, 174, 184, 229, 390
FauNDI	CATATG	1 cut(s)	372
Fnu4HI	GCNGC	3 cut(s)	172, 302, 356
FokI	GGATG	2 cut(s)	22, 373
Fsp4HI	GCNGC	3 cut(s)	172, 302, 356
FspBI	CTAG	2 cut(s)	21, 409
FspI	TGCGCA	1 cut(s)	267
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	3 cut(s)	172, 302, 356
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	2 cut(s)	39, 238
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	5 cut(s)	119, 178, 188, 233, 394
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	2 cut(s)	94, 214
HpaII	CCGG	2 cut(s)	39, 238
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	185, 230
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	152, 344
HpyCH4V	TGCA	3 cut(s)	44, 74, 325
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	5 cut(s)	119, 178, 188, 233, 394
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	3 cut(s)	140, 199, 367
Lsp1109I	GCAGC	3 cut(s)	183, 313, 367
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	2 cut(s)	21, 409
MalI	GATC	3 cut(s)	142, 201, 369
MboI	GATC	3 cut(s)	140, 199, 367
MboII	GAAGA	1 cut(s)	395
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	1 cut(s)	246
MnlI	CCTC	4 cut(s)	19, 63, 203, 235
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	128
MspI	CCGG	2 cut(s)	39, 238
MspR9I	CCNGG	2 cut(s)	239, 297
MvaI	CCWGG	1 cut(s)	297
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	3 cut(s)	140, 199, 367
NlaIII	CATG	5 cut(s)	119, 178, 188, 233, 394
NsbI	TGCGCA	1 cut(s)	267
NspI	RCATGY	1 cut(s)	178
PaeI	GCATGC	1 cut(s)	178
PagI	TCATGA	2 cut(s)	184, 229
PceI	AGGCCT	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	94, 214
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	173, 303, 357
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	3 cut(s)	172, 302, 356
Sau3AI	GATC	3 cut(s)	140, 199, 367
Sau96I	GGNCC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	239, 297
SetI	ASST	5 cut(s)	55, 110, 360, 381, 399
SfaNI	GCATC	1 cut(s)	53
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	1 cut(s)	246
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	2 cut(s)	21, 409
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	237, 295
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	2 cut(s)	152, 344
TaqI	TCGA	1 cut(s)	208
TasI	AATT	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	94, 214
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	3 cut(s)	171, 301, 355
TspDTI	ATGAA	3 cut(s)	132, 240, 389
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	2 cut(s)	21, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.