Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001511

Physical Location & Seq

Genomic Coordinates Reverse (-)

66368093 .. 66372646

Gene Structure 4554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG396700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGAGAAATATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGCAAAGAAGAAGTCAGGGAGCAAGGAAAGTTTCATCGATTCATTACATCGGAAATTTAAGTTTTCATCTGAAAGTAGAGTGAATGGTAGATCTGGAGGGTCTCGAAGACCATGTAGTGATGCCATTTCGGAAAAGGGGTCTCGATCTCCTTCACCCTCCAAACAAGTTGCAAGAACTCAAAGTTTTGCTGAAAGGAGTATTTCTCAACCACTTCCACTTCCTGGTCAACATCCTGCTCATGTCGGACGTACAGATTCTGGTTTTAGTATATCACCAAAACCAAGATCAGATAAATGCTCCAAGCCATTATTGTTTCTACCTCTCCCGAGACCTCGGTGCATTGGTGGGAGGTCAAATCGTGCTGACTTTGATGATGGAGATATGAATACTGGTTCAGTTTCTAGTGATACCTCTGTTGATAGTGAAGATCCAGCTGACTCAGGTCTCCGCAGCCCTCAGGCAATTGACTATGAAAGTGGGACTAGAACGGCAGCTGGCAGTCCTTCCAGTGTGATGCTCAAGGATCAGTCCTTCACTGTGGCCCCAGTAATCTCAAGAGAGGCAAAAAAACCAGCCAACATTTCATTCATTAATCAAATTTCCCCTTCATCGCCTAAACGGAGACCTTTGAGCAGTCATGTGCCAAATCTCCAGGTACCTTATCAAGGAGCTTTCTGGAGTGCTCCTGACAGCTCCATGTCAAGTCCTTCTAGAAGTCCAATTAGAGCATTTGGAACTGAGCAAGCCGTGAACTCTGCTTTCTGGGCTCCAAAAACTTATACTGATGTCACCATAGCAGGATCTGGCCACGGCTCCAGTCCAGGTTCTGGTCACAATTCTGGGCACAATTCAATGGGAGGGGATATGTCGGGACAGTTGTTTTGGCAGCAAAGCAAGGGTAGCCCCGAGTATTCTCCAGTACCTAGTCCCAGATTGACAAGCCCTGGCCCAGGCTCAAGAATTCATAGTGGTGCTGTTACACCTATTCATCCCAGAGCAGGTGGGGCTCTCAATGATTCGCAGACAAGCTGGCCTGATGATGGGAAACAACAAAGTCACCGTTTGCCTCTTCCTCCAGAAATTACTTTGTTGAGCCGTTTACGGCATCCAAACATTGTGCAGTATTATGGGTCTGAATCAGTTGGTGACAAGCTTTATATATATTTGGAGTATGTATCTGGTGGTTCTATATATAAACTTCTCCAAGACTATGGGCAATTTGGCGAACTTGCAATTCGTAGTTATACTCAACAAATCTTGTCGGGGCTTGCATATTTGCATGCTAAAAATACTGTCCACAGGGATATAAAAGGAGCAAACATACTTGTAGACCCAAATGGCCGTGTCAAGTTGGCGGACTTTGGGATGGCAAAGCATATTACCGGGCAGTCATGTCCTTTATCATTTAAGGGAAGTCCTTACTGGATGGCACCTGAGGTTAGATTGATTCAAATTTTTATCCTTATTTTCTTCACAGCATGCTGCTTGATGGATTACTTAATCTTCAATTCTGTTACTTCCCAGGTTATAAAGAACTCAAGTGGAGCCAACCTTGCTGTGGATATATGGAGTCTTGGGTGCACAGTTTTGGAAATGGCTACAACAAAACCACCTTGGAGTCAGTATGAAGGGGTTGCTGCCATGTTTAAGATTGGGAATAGCAAGGAACTGCCAGCAATTCCAGATCACCTCTTGGATGATGGAAAGGATTTCATAAGGCAATGCTTACAGCGAAATCCACTTCATCGTCCTACAGCTGCTCAGCTCTTGGAGCATCCCTTTGTGAAATATGCAGCACCTTTGGCAAGACCTATATTGGGCTCTGAGCTTTCTGATTCACCTGCTGGGGTTGCAAATGGAGTGAAGGCTCTGGGCATTGGGCAATCAAGAAATTTCTCCAATTTGGATTCAGATAGGCTTGCAATTCACTCATCTAGAGTTTCAAAAACTCATCACCATACCAGTGATCTCCATATTCCAAGGAACATATCATGCCCTGTATCACCCATCGGAAGCCCTCTATTGCACTCCAGGTCACCACCACACTTAAATGGAAGAATGTCACCGTCTCCTATATCTAGCCCGCGGACCACTTCGGGCTCATCTACGCCTCTCACTGGTGGCAGCGGTGCCATTCCATTTATTCACCTAAAACAGTCCATAAATTTGCAAGAGGGTTTCGGAGGCATTTCAAATCCCTCAAATGGTCTCTATGGTAATGGCCCCTCCTATCATGATTCATCTCCTGACATGTTTCGAGGGAAGCAACCAGGGTCTCCCATCTTCTCAGAATTAATGCCCTCTGAAAATGATGTTCTTGCAAAACAGTTTGTAAGGCCCGCGCATACAGAGCAGTACAATGGACAGTCAGTTTTGGCTGATCGTGTGTCTCGCCAACTCCTCAAGGATCATGTTAAGATGAACAGACTGGATTTAAGTCCAAAGTCTCCTTCGACTGGCCGGACAAATGGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

840

Amino Acids

90.72

Weight (kDa)

9.58

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	365 - 495	4.5e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	372 - 495	4.8e-37	Protein kinase domain
Pkinase	PF00069	525 - 610	9e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	531 - 606	3e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63700 AT1G63700
fragaria_vesca	FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_5g02670 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920 FvH4_7g29920
malus_domestica	MD01G1205500.v1.1 MD06G1085900.v1.1 MD07G1274900.v1.1
prunus_persica	Prupe.2G298100_v2.0.a1 Prupe.2G298100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1 Prupe.5G102100_v2.0.a1
pyrus_communis	pycom01g21500 pycom06g08220 pycom07g25100
rosa_chinensis	RchiOBHm_Chr1g0377881 RchiOBHm_Chr7g0197281
rosa_laevigata	RLG00000003944 RLG00000026489
rosa_multiflora	Rmu_co8459889.1_g000001 Rmu_sc0004491.1_g000001 Rmu_sc0004824.1_g000011 Rmu_sc0010019.1_g000003 Rmu_sc0017623.1_g000004 Rmu_sc0030897.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258510 Rroxscaffold_4G00280980
rosa_rugosa	Rorug01G0405400 Rorug07G0039200
rosa_samantha	Rh1AG426400 Rh1BG382900 Rh1CG396700 Rh1DG413900 Rh7AG164200 Rh7BG166000 Rh7CG172700 Rh7DG165400
rosa_wichuraiana	Rw1G037210 Rw7G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1574
AarI	CACCTGC	2 cut(s)	1034, 1894
Acc36I	ACCTGC	2 cut(s)	1034, 1894
Acc65I	GGTACC	1 cut(s)	700
AccB1I	GGYRCC	3 cut(s)	700, 1474, 2174
AccB7I	CCANNNNNTGG	2 cut(s)	266, 872
AccI	GTMKAC	1 cut(s)	1374
AccII	CGCG	2 cut(s)	2131, 2387
AciI	CCGC	6 cut(s)	493, 1400, 2129, 2131, 2172, 2385
AclWI	GGATC	4 cut(s)	467, 576, 853, 2460
AcoI	YGGCCR	3 cut(s)	850, 1384, 2503
AcsI	RAATTY	6 cut(s)	98, 642, 1005, 1497, 1936, 2209
AfaI	GTAC	4 cut(s)	295, 702, 966, 2402
AflIII	ACRYGT	1 cut(s)	2295
AgsI	TTSAA	5 cut(s)	897, 1496, 1552, 1989, 2238
AjnI	CCWGG	8 cut(s)	265, 696, 865, 988, 994, 1566, 2075, 2314
AjuI	GAANNNNNNNTTGG	4 cut(s)	614, 646, 2479, 2511
AluBI	AGCT	9 cut(s)	479, 539, 716, 738, 1074, 1198, 1802, 1810, 1873
AluI	AGCT	9 cut(s)	479, 539, 716, 738, 1074, 1198, 1802, 1810, 1873
Alw21I	GWGCWC	2 cut(s)	730, 1628
Alw44I	GTGCAC	1 cut(s)	1624
AlwI	GGATC	4 cut(s)	467, 576, 853, 2460
AlwNI	CAGNNNCTG	3 cut(s)	302, 848, 872
Ama87I	CYCGRG	2 cut(s)	370, 950
AoxI	GGCC	8 cut(s)	585, 850, 991, 1076, 1384, 2266, 2381, 2503
ApaLI	GTGCAC	1 cut(s)	1624
ApeKI	GCWGC	8 cut(s)	495, 536, 931, 1527, 1682, 1802, 1838, 2169
ApoI	RAATTY	6 cut(s)	98, 642, 1005, 1497, 1936, 2209
ArsI	GACNNNNNNTTYG	4 cut(s)	41, 73, 909, 941
AseI	ATTAAT	2 cut(s)	636, 2339
Asp718I	GGTACC	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	2389
AspS9I	GGNCC	5 cut(s)	586, 992, 2133, 2267, 2382
AsuC2I	CCSGG	1 cut(s)	1429
AvaI	CYCGRG	2 cut(s)	370, 950
AvaII	GGWCC	1 cut(s)	2133
AxyI	CCTNAGG	2 cut(s)	501, 1479
BaeGI	GKGCMC	2 cut(s)	891, 1628
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BalI	TGGCCA	1 cut(s)	852
BanI	GGYRCC	3 cut(s)	700, 1474, 2174
BanII	GRGCYC	4 cut(s)	814, 1054, 1868, 2147
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	2 cut(s)	730, 1628
BbvI	GCAGC	8 cut(s)	507, 548, 943, 1514, 1669, 1789, 1850, 2181
BccI	CCATC	8 cut(s)	413, 1079, 1405, 1465, 1528, 1739, 2060, 2333
BceAI	ACGGC	6 cut(s)	549, 776, 871, 1125, 1163, 1371
BciT130I	CCWGG	8 cut(s)	267, 698, 867, 990, 996, 1568, 2077, 2316
BcnI	CCSGG	1 cut(s)	1429
BfaI	CTAG	6 cut(s)	447, 528, 756, 969, 1980, 2124
BfmI	CTRYAG	1 cut(s)	1797
BfuAI	ACCTGC	2 cut(s)	1034, 1894
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	8 cut(s)	496, 537, 932, 1528, 1683, 1803, 1839, 2170
BlpI	GCTNAGC	1 cut(s)	1806
BlsI	GCNGC	8 cut(s)	497, 538, 933, 1529, 1684, 1804, 1840, 2171
Bme1390I	CCNGG	9 cut(s)	267, 698, 867, 990, 996, 1429, 1568, 2077, 2316
Bme18I	GGWCC	1 cut(s)	2133
BmeT110I	CYCGRG	2 cut(s)	370, 950
BmgT120I	GGNCC	5 cut(s)	586, 992, 2133, 2267, 2382
BmiI	GGNNCC	8 cut(s)	588, 702, 813, 859, 1476, 1591, 2176, 2269
BmrFI	CCNGG	9 cut(s)	267, 698, 867, 990, 996, 1429, 1568, 2077, 2316
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	4 cut(s)	154, 549, 1159, 1828
BmuI	ACTGGG	1 cut(s)	584
BoxI	GACNNNNGTC	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	157
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BpmI	CTGGAG	7 cut(s)	159, 680, 742, 844, 945, 1104, 2059
Bpu1102I	GCTNAGC	1 cut(s)	1806
BpuEI	CTTGAG	5 cut(s)	548, 583, 985, 1567, 2432
BpuMI	CCSGG	1 cut(s)	1429
Bsa29I	ATCGAT	1 cut(s)	81
BsaI	GGTCTC	7 cut(s)	150, 189, 367, 494, 661, 2258, 2325
BsaJI	CCNNGG	9 cut(s)	377, 853, 988, 994, 1566, 1658, 2024, 2129, 2315
Bse21I	CCTNAGG	2 cut(s)	501, 1479
Bse3DI	GCAATG	1 cut(s)	1772
BseBI	CCWGG	8 cut(s)	267, 698, 867, 990, 996, 1568, 2077, 2316
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	9 cut(s)	377, 853, 988, 994, 1566, 1658, 2024, 2129, 2315
BseGI	GGATG	8 cut(s)	35, 274, 1033, 1150, 1416, 1476, 1747, 1819
BseMI	GCAATG	1 cut(s)	1772
BseMII	CTCAG	7 cut(s)	498, 515, 774, 1470, 1820, 1860, 2346
BseRI	GAGGAG	1 cut(s)	2435
BseSI	GKGCMC	2 cut(s)	891, 1628
BseXI	GCAGC	8 cut(s)	507, 548, 943, 1514, 1669, 1789, 1850, 2181
BseYI	CCCAGC	1 cut(s)	1889
BsgI	GTGCAG	1 cut(s)	1184
Bsh1236I	CGCG	2 cut(s)	2131, 2387
BshFI	GGCC	8 cut(s)	587, 852, 993, 1078, 1386, 2268, 2383, 2505
BshNI	GGYRCC	3 cut(s)	700, 1474, 2174
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	730, 1628
BsiHKCI	CYCGRG	2 cut(s)	370, 950
BsiSI	CCGG	2 cut(s)	1428, 2506
BslFI	GGGAC	3 cut(s)	538, 930, 957
BsmBI	CGTCTC	1 cut(s)	2118
BsmFI	GGGAC	3 cut(s)	538, 930, 957
BsnI	GGCC	8 cut(s)	587, 852, 993, 1078, 1386, 2268, 2383, 2505
Bso31I	GGTCTC	7 cut(s)	150, 189, 367, 494, 661, 2258, 2325
BsoBI	CYCGRG	2 cut(s)	370, 950
Bsp1286I	GDGCHC	7 cut(s)	730, 814, 891, 1054, 1628, 1868, 2147
Bsp1720I	GCTNAGC	1 cut(s)	1806
BspACI	CCGC	6 cut(s)	493, 1400, 2129, 2131, 2172, 2385
BspANI	GGCC	8 cut(s)	587, 852, 993, 1078, 1386, 2268, 2383, 2505
BspCNI	CTCAG	7 cut(s)	497, 514, 775, 1471, 1819, 1861, 2345
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	2 cut(s)	2131, 2387
BspHI	TCATGA	1 cut(s)	2278
BspLI	GGNNCC	8 cut(s)	588, 702, 813, 859, 1476, 1591, 2176, 2269
BspMI	ACCTGC	2 cut(s)	1034, 1894
BspPI	GGATC	4 cut(s)	467, 576, 853, 2460
BspT107I	GGYRCC	3 cut(s)	700, 1474, 2174
BspTNI	GGTCTC	7 cut(s)	150, 189, 367, 494, 661, 2258, 2325
BsrDI	GCAATG	1 cut(s)	1772
BssECI	CCNNGG	9 cut(s)	377, 853, 988, 994, 1566, 1658, 2024, 2129, 2315
BssT1I	CCWWGG	2 cut(s)	1658, 2024
Bst2UI	CCWGG	8 cut(s)	267, 698, 867, 990, 996, 1568, 2077, 2316
Bst4CI	ACNGT	9 cut(s)	583, 921, 1106, 1339, 1630, 2112, 2202, 2373, 2412
Bst6I	CTCTTC	1 cut(s)	1119
BstDEI	CTNAG	7 cut(s)	484, 501, 783, 1479, 1806, 1869, 2332
BstDSI	CCRYGG	2 cut(s)	853, 2129
BstEII	GGTNACC	1 cut(s)	2079
BstENI	CCTNNNNNAGG	2 cut(s)	708, 993
BstF5I	GGATG	8 cut(s)	35, 274, 1033, 1150, 1416, 1476, 1747, 1819
BstFNI	CGCG	2 cut(s)	2131, 2387
BstHHI	GCGC	1 cut(s)	2389
BstMWI	GCNNNNNNNGC	8 cut(s)	809, 945, 1049, 1598, 1816, 1847, 1895, 2395
BstNI	CCWGG	8 cut(s)	267, 698, 867, 990, 996, 1568, 2077, 2316
BstNSI	RCATGY	3 cut(s)	1328, 1527, 2299
BstPAI	GACNNNNGTC	1 cut(s)	486
BstPI	GGTNACC	1 cut(s)	2079
BstSCI	CCNGG	9 cut(s)	265, 696, 865, 988, 994, 1427, 1566, 2075, 2314
BstSFI	CTRYAG	1 cut(s)	1797
BstSLI	GKGCMC	2 cut(s)	891, 1628
BstUI	CGCG	2 cut(s)	2131, 2387
BstV1I	GCAGC	8 cut(s)	507, 548, 943, 1514, 1669, 1789, 1850, 2181
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	3 cut(s)	134, 472, 845
BstXI	CCANNNNNNTGG	1 cut(s)	1256
BstYI	RGATCY	3 cut(s)	134, 472, 845
Bsu15I	ATCGAT	1 cut(s)	81
Bsu36I	CCTNAGG	2 cut(s)	501, 1479
BsuRI	GGCC	8 cut(s)	587, 852, 993, 1078, 1386, 2268, 2383, 2505
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	2 cut(s)	853, 2129
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	8 cut(s)	35, 274, 1033, 1150, 1416, 1476, 1747, 1819
BtsIMutI	CAGTG	4 cut(s)	559, 579, 2014, 2160
BveI	ACCTGC	2 cut(s)	1034, 1894
CaiI	CAGNNNCTG	3 cut(s)	302, 848, 872
CciI	TCATGA	1 cut(s)	2278
CfoI	GCGC	1 cut(s)	2389
Cfr13I	GGNCC	5 cut(s)	586, 992, 2133, 2267, 2382
Cfr42I	CCGCGG	1 cut(s)	2132
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	4 cut(s)	294, 701, 965, 2401
CviQI	GTAC	4 cut(s)	294, 701, 965, 2401
DdeI	CTNAG	7 cut(s)	484, 501, 783, 1479, 1806, 1869, 2332
EaeI	YGGCCR	3 cut(s)	850, 1384, 2503
Eam1104I	CTCTTC	1 cut(s)	1119
EarI	CTCTTC	1 cut(s)	1119
EciI	GGCGGA	1 cut(s)	1415
Eco130I	CCWWGG	2 cut(s)	1658, 2024
Eco24I	GRGCYC	4 cut(s)	814, 1054, 1868, 2147
Eco31I	GGTCTC	7 cut(s)	150, 189, 367, 494, 661, 2258, 2325
Eco47I	GGWCC	1 cut(s)	2133
Eco81I	CCTNAGG	2 cut(s)	501, 1479
Eco88I	CYCGRG	2 cut(s)	370, 950
Eco91I	GGTNACC	1 cut(s)	2079
EcoNI	CCTNNNNNAGG	2 cut(s)	708, 993
EcoO65I	GGTNACC	1 cut(s)	2079
EcoRI	GAATTC	1 cut(s)	1005
EcoRII	CCWGG	8 cut(s)	265, 696, 865, 988, 994, 1566, 2075, 2314
EcoT14I	CCWWGG	2 cut(s)	1658, 2024
EcoT38I	GRGCYC	4 cut(s)	814, 1054, 1868, 2147
ErhI	CCWWGG	2 cut(s)	1658, 2024
Esp3I	CGTCTC	1 cut(s)	2118
FaqI	GGGAC	3 cut(s)	538, 930, 957
FauI	CCCGC	2 cut(s)	2136, 2392
FblI	GTMKAC	1 cut(s)	1374
Fnu4HI	GCNGC	8 cut(s)	496, 537, 932, 1528, 1683, 1803, 1839, 2170
FokI	GGATG	8 cut(s)	22, 261, 1020, 1137, 1423, 1483, 1754, 1806
FriOI	GRGCYC	4 cut(s)	814, 1054, 1868, 2147
Fsp4HI	GCNGC	8 cut(s)	496, 537, 932, 1528, 1683, 1803, 1839, 2170
FspBI	CTAG	6 cut(s)	447, 528, 756, 969, 1980, 2124
GlaI	GCGC	1 cut(s)	2388
GluI	GCNGC	8 cut(s)	496, 537, 932, 1528, 1683, 1803, 1839, 2170
GsaI	CCCAGC	1 cut(s)	1893
GsuI	CTGGAG	7 cut(s)	159, 680, 742, 844, 945, 1104, 2059
HaeIII	GGCC	8 cut(s)	587, 852, 993, 1078, 1386, 2268, 2383, 2505
HapII	CCGG	2 cut(s)	1428, 2506
HhaI	GCGC	1 cut(s)	2389
Hin6I	GCGC	1 cut(s)	2387
HinP1I	GCGC	1 cut(s)	2387
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	1196
HpaII	CCGG	2 cut(s)	1428, 2506
Hpy166II	GTNNAC	6 cut(s)	272, 796, 1145, 1342, 1375, 1626
Hpy8I	GTNNAC	6 cut(s)	272, 796, 1145, 1342, 1375, 1626
HpyAV	CCTTC	9 cut(s)	24, 204, 558, 586, 660, 762, 1667, 1903, 2505
HpyCH4III	ACNGT	9 cut(s)	583, 921, 1106, 1339, 1630, 2112, 2202, 2373, 2412
HpyCH4IV	ACGT	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	8 cut(s)	809, 945, 1049, 1598, 1816, 1847, 1895, 2395
HpyF3I	CTNAG	7 cut(s)	484, 501, 783, 1479, 1806, 1869, 2332
HpySE526I	ACGT	1 cut(s)	292
HspAI	GCGC	1 cut(s)	2387
KpnI	GGTACC	1 cut(s)	704
KspI	CCGCGG	1 cut(s)	2132
Lsp1109I	GCAGC	8 cut(s)	507, 548, 943, 1514, 1669, 1789, 1850, 2181
LweI	GCATC	4 cut(s)	154, 549, 1159, 1828
MaeI	CTAG	6 cut(s)	447, 528, 756, 969, 1980, 2124
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	8 cut(s)	832, 875, 1021, 1100, 1190, 1558, 2079, 2106
MboII	GAAGA	8 cut(s)	64, 162, 482, 1106, 1507, 1540, 2112, 2320
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	3 cut(s)	134, 472, 845
MhlI	GDGCHC	7 cut(s)	730, 814, 891, 1054, 1628, 1868, 2147
MlsI	TGGCCA	1 cut(s)	852
MluNI	TGGCCA	1 cut(s)	852
MlyI	GAGTC	3 cut(s)	476, 1624, 1672
MmeI	TCCRAC	1 cut(s)	268
Mox20I	TGGCCA	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	852
MseI	TTAA	9 cut(s)	102, 636, 1452, 1544, 1692, 2093, 2339, 2460, 2480
MslI	CAYNNNNRTG	3 cut(s)	1014, 2007, 2094
Msp20I	TGGCCA	1 cut(s)	852
MspA1I	CMGCKG	5 cut(s)	479, 539, 1802, 2131, 2172
MspI	CCGG	2 cut(s)	1428, 2506
MspR9I	CCNGG	9 cut(s)	267, 698, 867, 990, 996, 1429, 1568, 2077, 2316
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	8 cut(s)	267, 698, 867, 990, 996, 1568, 2077, 2316
MvnI	CGCG	2 cut(s)	2131, 2387
MwoI	GCNNNNNNNGC	8 cut(s)	809, 945, 1049, 1598, 1816, 1847, 1895, 2395
NciI	CCSGG	1 cut(s)	1429
NlaIV	GGNNCC	8 cut(s)	588, 702, 813, 859, 1476, 1591, 2176, 2269
NmuCI	GTSAC	6 cut(s)	832, 875, 1100, 1190, 2079, 2106
NspI	RCATGY	3 cut(s)	1328, 1527, 2299
PaeI	GCATGC	2 cut(s)	1328, 1527
PagI	TCATGA	1 cut(s)	2278
PaqCI	CACCTGC	2 cut(s)	1034, 1894
PciI	ACATGT	1 cut(s)	2295
PfeI	GAWTC	8 cut(s)	83, 299, 1061, 1181, 1492, 1880, 1952, 2282
PflMI	CCANNNNNTGG	2 cut(s)	266, 872
PkrI	GCNGC	8 cut(s)	497, 538, 933, 1529, 1684, 1804, 1840, 2171
PleI	GAGTC	3 cut(s)	476, 1623, 1671
PpsI	GAGTC	3 cut(s)	476, 1623, 1671
PscI	ACATGT	1 cut(s)	2295
PshAI	GACNNNNGTC	1 cut(s)	486
PshBI	ATTAAT	2 cut(s)	636, 2339
PsiI	TTATAA	1 cut(s)	1574
Psp6I	CCWGG	8 cut(s)	265, 696, 865, 988, 994, 1566, 2075, 2314
PspEI	GGTNACC	1 cut(s)	2079
PspFI	CCCAGC	1 cut(s)	1889
PspGI	CCWGG	8 cut(s)	265, 696, 865, 988, 994, 1566, 2075, 2314
PspN4I	GGNNCC	8 cut(s)	588, 702, 813, 859, 1476, 1591, 2176, 2269
PspPI	GGNCC	5 cut(s)	586, 992, 2133, 2267, 2382
PstNI	CAGNNNCTG	3 cut(s)	302, 848, 872
PsuI	RGATCY	3 cut(s)	134, 472, 845
PvuII	CAGCTG	3 cut(s)	479, 539, 1802
RsaI	GTAC	4 cut(s)	295, 702, 966, 2402
RsaNI	GTAC	4 cut(s)	294, 701, 965, 2401
RseI	CAYNNNNRTG	3 cut(s)	1014, 2007, 2094
SacII	CCGCGG	1 cut(s)	2132
SaqAI	TTAA	9 cut(s)	102, 636, 1452, 1544, 1692, 2093, 2339, 2460, 2480
SatI	GCNGC	8 cut(s)	496, 537, 932, 1528, 1683, 1803, 1839, 2170
Sau96I	GGNCC	5 cut(s)	586, 992, 2133, 2267, 2382
SchI	GAGTC	3 cut(s)	476, 1624, 1672
ScrFI	CCNGG	9 cut(s)	267, 698, 867, 990, 996, 1429, 1568, 2077, 2316
SduI	GDGCHC	7 cut(s)	730, 814, 891, 1054, 1628, 1868, 2147
SfaNI	GCATC	4 cut(s)	154, 549, 1159, 1828
SfcI	CTRYAG	1 cut(s)	1797
Sfr303I	CCGCGG	1 cut(s)	2132
SgrBI	CCGCGG	1 cut(s)	2132
SinI	GGWCC	1 cut(s)	2133
SmiMI	CAYNNNNRTG	3 cut(s)	1014, 2007, 2094
SmlI	CTYRAG	5 cut(s)	563, 598, 1000, 1582, 2447
SmoI	CTYRAG	5 cut(s)	563, 598, 1000, 1582, 2447
SphI	GCATGC	2 cut(s)	1328, 1527
SsiI	CCGC	6 cut(s)	493, 1400, 2129, 2131, 2172, 2385
SspMI	CTAG	6 cut(s)	447, 528, 756, 969, 1980, 2124
StyD4I	CCNGG	9 cut(s)	265, 696, 865, 988, 994, 1427, 1566, 2075, 2314
StyI	CCWWGG	2 cut(s)	1658, 2024
TaaI	ACNGT	9 cut(s)	583, 921, 1106, 1339, 1630, 2112, 2202, 2373, 2412
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	5 cut(s)	81, 148, 187, 2302, 2498
TatI	WGTACW	1 cut(s)	2400
TfiI	GAWTC	8 cut(s)	83, 299, 1061, 1181, 1492, 1880, 1952, 2282
Tru1I	TTAA	9 cut(s)	102, 636, 1452, 1544, 1692, 2093, 2339, 2460, 2480
Tru9I	TTAA	9 cut(s)	102, 636, 1452, 1544, 1692, 2093, 2339, 2460, 2480
TscAI	CASTG	4 cut(s)	559, 586, 2014, 2167
TseFI	GTSAC	6 cut(s)	832, 875, 1100, 1190, 2079, 2106
TseI	GCWGC	8 cut(s)	495, 536, 931, 1527, 1682, 1802, 1838, 2169
Tsp45I	GTSAC	6 cut(s)	832, 875, 1100, 1190, 2079, 2106
TspGWI	ACGGA	1 cut(s)	679
TspRI	CASTG	4 cut(s)	559, 586, 2014, 2167
Van91I	CCANNNNNTGG	2 cut(s)	266, 872
VneI	GTGCAC	1 cut(s)	1624
VpaK11BI	GGWCC	1 cut(s)	2133
VspI	ATTAAT	2 cut(s)	636, 2339
XagI	CCTNNNNNAGG	2 cut(s)	708, 993
XapI	RAATTY	6 cut(s)	98, 642, 1005, 1497, 1936, 2209
XbaI	TCTAGA	2 cut(s)	755, 1979
XceI	RCATGY	3 cut(s)	1328, 1527, 2299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1600
XmiI	GTMKAC	1 cut(s)	1374
XspI	CTAG	6 cut(s)	447, 528, 756, 969, 1980, 2124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.