pycom01g22920

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0005760
Physical Location & Seq
Reverse (-)
20361242 .. 20362114
873 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
ATGCATTCCAGAAAGGGATCCTTTTCGGATTCTTTATTTCTAATCCATCAAATCAGGAAATTCTTGCAGTTAAAAATTGATCAACGGTTACAAATAGGAGCTCACTTTAAAAGTTATAATAACTTCAACCGCCCTAATTTGGTGGATCAGAAGGAATGGATCCAGAAAGGATCTCTTTCTGACACGACGCCGTATCAACAGCCACATTGTTTTCCCCTCCTGCCTCCTTCCTGTTCTATTTCACCCCTCCTTCGCAACAACGGGCAAGGAAAAGGAAAAGAAGGACAGAAATCAGCAAAGATGGCGATCAATCTGGGCCGTCTATTTTCATCAACGACCATCCTCTCAACCTCCACAACGGAGCCTCTAACTCGCGCCGCCTTCAACTCGGTGAGTCGGCTCCTCTGCTCGTCAGCCTCGCCATCGCAGCCCCAGCACGAAAAACCCAGCAAGGAGCAAAGTGAACCCATCGTAGAAAAACACGAAAATCAAGCTGAAGAAGACGACGACGACGACGACGATGATGGGTTGGTGAATAAAGAGACCGGCGAGATCGGTGGGCCCAGAGGGCCGGAGCCCACCCGTTTCGGCGATTGGGAGCGAAACGGTCGGTGCTGTGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

209

Amino Acids

23.31

Weight (kDa)

6.31

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 160 - 208 1.3e-17 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AccII CGCG 1 cut(s) 375
AciI CCGC 2 cut(s) 130, 378
AclWI GGATC 6 cut(s) 12, 25, 153, 154, 167, 178
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 2 cut(s) 127, 385
AluBI AGCT 2 cut(s) 101, 494
AluI AGCT 2 cut(s) 101, 494
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 6 cut(s) 12, 25, 153, 154, 167, 178
AoxI GGCC 3 cut(s) 316, 560, 569
ApaI GGGCCC 1 cut(s) 564
ApeKI GCWGC 1 cut(s) 427
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 4 cut(s) 316, 560, 561, 569
AsuHPI GGTGA 3 cut(s) 234, 403, 544
BaeGI GKGCMC 1 cut(s) 564
BamHI GGATCC 2 cut(s) 17, 159
BanII GRGCYC 3 cut(s) 103, 564, 579
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 439
BccI CCATC 6 cut(s) 54, 295, 347, 430, 476, 518
BceAI ACGGC 2 cut(s) 175, 303
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 536
BglI GCCNNNNNGGC 1 cut(s) 568
BisI GCNGC 2 cut(s) 378, 428
BlsI GCNGC 2 cut(s) 379, 429
BmgT120I GGNCC 4 cut(s) 316, 560, 561, 569
BmiI GGNNCC 6 cut(s) 19, 161, 363, 401, 562, 576
BpiI GAAGAC 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 536
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 545
Bse8I GATNNNNATC 1 cut(s) 305
BseGI GGATG 1 cut(s) 339
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 1 cut(s) 439
BseYI CCCAGC 2 cut(s) 432, 446
Bsh1236I CGCG 1 cut(s) 375
Bsh1285I CGRYCG 1 cut(s) 610
BshFI GGCC 3 cut(s) 318, 562, 571
BsiEI CGRYCG 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 103
BsiSI CCGG 2 cut(s) 546, 572
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 3 cut(s) 318, 562, 571
Bso31I GGTCTC 1 cut(s) 536
Bsp120I GGGCCC 1 cut(s) 560
Bsp1286I GDGCHC 3 cut(s) 103, 564, 579
Bsp143I GATC 7 cut(s) 17, 79, 145, 159, 170, 306, 552
BspACI CCGC 2 cut(s) 130, 378
BspANI GGCC 3 cut(s) 318, 562, 571
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 6 cut(s) 19, 161, 363, 401, 562, 576
BspPI GGATC 6 cut(s) 12, 25, 153, 154, 167, 178
BspTNI GGTCTC 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 545
BssAI RCCGGY 1 cut(s) 545
BssMI GATC 7 cut(s) 17, 79, 145, 159, 170, 306, 552
BssNI GRCGYC 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 87, 608
BstACI GRCGYC 1 cut(s) 188
BstF5I GGATG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 375
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 7 cut(s) 20, 82, 148, 162, 173, 309, 555
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 7 cut(s) 17, 79, 145, 159, 170, 306, 552
BstMCI CGRYCG 1 cut(s) 610
BstMWI GCNNNNNNNGC 4 cut(s) 302, 427, 433, 568
BstSLI GKGCMC 1 cut(s) 564
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 3 cut(s) 17, 159, 170
BstYI RGATCY 3 cut(s) 17, 159, 170
BsuRI GGCC 3 cut(s) 318, 562, 571
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 1 cut(s) 339
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 4 cut(s) 316, 560, 561, 569
CseI GACGC 1 cut(s) 196
DpnI GATC 7 cut(s) 19, 81, 147, 161, 172, 308, 554
DpnII GATC 7 cut(s) 17, 79, 145, 159, 170, 306, 552
DraI TTTAAA 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 101
Eco24I GRGCYC 3 cut(s) 103, 564, 579
Eco31I GGTCTC 1 cut(s) 536
Eco53kI GAGCTC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 516
EcoICRI GAGCTC 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 103, 564, 579
FaiI YATR 1 cut(s) 117
FalI AAGNNNNNCTT 3 cut(s) 37, 159, 191
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 378, 428
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 3 cut(s) 103, 564, 579
Fsp4HI GCNGC 2 cut(s) 378, 428
GlaI GCGC 1 cut(s) 376
GluI GCNGC 2 cut(s) 378, 428
GsaI CCCAGC 2 cut(s) 436, 450
HaeIII GGCC 3 cut(s) 318, 562, 571
HapII CCGG 2 cut(s) 546, 572
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 2 cut(s) 29, 394
HpaII CCGG 2 cut(s) 546, 572
HphI GGTGA 3 cut(s) 234, 403, 544
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 3 cut(s) 28, 150, 181
Hpy188III TCNNGA 3 cut(s) 9, 55, 163
Hpy8I GTNNAC 1 cut(s) 464
Hpy99I CGWCG 6 cut(s) 190, 509, 512, 515, 518, 521
HpyAV CCTTC 5 cut(s) 145, 237, 260, 275, 391
HpyCH4III ACNGT 2 cut(s) 87, 608
HpyCH4V TGCA 2 cut(s) 4, 67
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 427, 433, 568
Hsp92I GRCGYC 1 cut(s) 188
HspAI GCGC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 7 cut(s) 17, 79, 145, 159, 170, 306, 552
LmnI GCTCC 6 cut(s) 98, 361, 405, 454, 574, 598
Lsp1109I GCAGC 1 cut(s) 439
MaeIII GTNAC 1 cut(s) 87
MalI GATC 7 cut(s) 19, 81, 147, 161, 172, 308, 554
MboI GATC 7 cut(s) 17, 79, 145, 159, 170, 306, 552
MboII GAAGA 2 cut(s) 509, 512
MflI RGATCY 3 cut(s) 17, 159, 170
MhlI GDGCHC 3 cut(s) 103, 564, 579
MluCI AATT 3 cut(s) 59, 75, 136
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 9 cut(s) 227, 234, 257, 353, 361, 375, 413, 427, 560
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 71, 108
MspI CCGG 2 cut(s) 546, 572
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 4 cut(s) 302, 427, 433, 568
NdeII GATC 7 cut(s) 17, 79, 145, 159, 170, 306, 552
NlaIV GGNNCC 6 cut(s) 19, 161, 363, 401, 562, 576
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 3 cut(s) 510, 513, 516
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 379, 429
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PsiI TTATAA 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 103
PspFI CCCAGC 2 cut(s) 432, 446
PspN4I GGNNCC 6 cut(s) 19, 161, 363, 401, 562, 576
PspOMI GGGCCC 1 cut(s) 560
PspPI GGNCC 4 cut(s) 316, 560, 561, 569
PsuI RGATCY 3 cut(s) 17, 159, 170
SacI GAGCTC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 71, 108
SatI GCNGC 2 cut(s) 378, 428
Sau3AI GATC 7 cut(s) 17, 79, 145, 159, 170, 306, 552
Sau96I GGNCC 4 cut(s) 316, 560, 561, 569
SchI GAGTC 1 cut(s) 403
SduI GDGCHC 3 cut(s) 103, 564, 579
SetI ASST 3 cut(s) 103, 353, 496
SfiI GGCCNNNNNGGCC 1 cut(s) 568
Sse9I AATT 3 cut(s) 59, 75, 136
SsiI CCGC 2 cut(s) 130, 378
SstI GAGCTC 1 cut(s) 103
TaaI ACNGT 2 cut(s) 87, 608
TasI AATT 3 cut(s) 59, 75, 136
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 71, 108
Tru9I TTAA 2 cut(s) 71, 108
TseI GCWGC 1 cut(s) 427
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 1 cut(s) 374
XapI RAATTY 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.