pycom02g04920

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0004337
Physical Location & Seq
Forward (+)
3217304 .. 3218613
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
ATGGTCAACAGAATGATGAAAACGATGGGGTTAAAAGGAGGGAGTCAGACCGACTCAGTATTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCCTCGAATAAATCCCCTCCCTTCACTCGCTCTTGTTTCTCAATTCCCCCTCTTCCTTTCCCGTTTCCCTCACTCACCCACACACGCAACAACTACGTGCACTCTCCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGCGTTACCCTATATATAATATAACTCGGTCACACTTCCTGAATCTCACAAAAGCCAACTCCTTTCCACTACCAGAACGCATTCTATTTATAGTAAACCAGAGGAAGAAACGAAAGCTCGAAACTTTTAGCTTCAACTCCTCCTCACACTCCCCTCCTTCCCCGTCCTCATCTGGGTTTTCCCACTCCATTCCGAACCCCGGTCAAAACCCACTTCCCGAAATGTCCAACTCGCCAGACCCGGATCAGAAGCGGGCCAAGCGAGCCAGAGAAACCAGCAGCAAGCACCCAGTTTACAGAGGGGTCCGAATGCGGACATGGGGCAAGTGGGTCTCAGAAATCCGCGAGCCCAGGAAGAAGAATCGGATCTGGCTCGGTACATTCTCGACACCCGAAATGGCCGCGCGTGCCCACGACGTGGCAGCGCTGACCATCAAAGGCAACTCCGCGATCCTCAACTTCCCCGGACTCGTCGGGTTGCTGCCTCGACCCGACTCGAACTCTCCTCGGGACATACAAGCCGCGGCTTTCAAAGCCGCTTCCATGGAAACTCTAAATGCTCCGCCTCCTCCACCGTCGCAGTCTTCTTCGTCGTCGTCGTCAGCATTGTCACAGTCCTCACCATCATCCTCAATGGTGGCTGCGACAAGTACGAGCGAGGACGCAGGAACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGCCTGGGAACGAGCTACGAGTCGGCCCAGTCGGGGAGCGAGCTCGTGTTTGCTGATTCGGTGGAGGGGTGGCTGTATCCTCCGCCGTGGTGGCACAACAGTTATTTCGAGGAAGATTACGGGTATAATAGTCTTATCAACAGTATTATTAGGGATGATCAAATGTTAATGCCTGAACCACCAGCTGCCGAGTGTGTTGAAGTTGAGGCCTCATTGTGGCATCATTAA

Protein Analysis

393

Amino Acids

43.12

Weight (kDa)

8.76

Isoelectric Point (pI)

65.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 179 - 229 1.5e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 664
AccII CGCG 5 cut(s) 591, 650, 652, 695, 770
AclWI GGATC 3 cut(s) 498, 620, 691
AcoI YGGCCR 1 cut(s) 645
AdeI CACNNNGTG 1 cut(s) 664
AfaI GTAC 2 cut(s) 625, 898
AfeI AGCGCT 1 cut(s) 672
AfiI CCNNNNNNNGG 6 cut(s) 420, 446, 664, 956, 984, 1167
AgsI TTSAA 3 cut(s) 382, 778, 1151
AjiI CACGTC 1 cut(s) 664
AjnI CCWGG 2 cut(s) 596, 954
AluBI AGCT 7 cut(s) 364, 378, 928, 946, 966, 994, 1136
AluI AGCT 7 cut(s) 364, 378, 928, 946, 966, 994, 1136
Alw21I GWGCWC 2 cut(s) 198, 996
Alw26I GTCTC 1 cut(s) 583
Alw44I GTGCAC 1 cut(s) 194
AlwI GGATC 3 cut(s) 498, 620, 691
Ama87I CYCGRG 1 cut(s) 753
Aor51HI AGCGCT 1 cut(s) 672
AoxI GGCC 4 cut(s) 501, 645, 975, 1158
ApaLI GTGCAC 1 cut(s) 194
ApeKI GCWGC 6 cut(s) 525, 668, 727, 887, 946, 1136
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 2 cut(s) 652, 673
AspS9I GGNCC 3 cut(s) 501, 550, 976
AsuC2I CCSGG 3 cut(s) 447, 488, 711
AsuHPI GGTGA 2 cut(s) 163, 858
AvaI CYCGRG 1 cut(s) 753
AvaII GGWCC 1 cut(s) 550
BaeGI GKGCMC 2 cut(s) 198, 658
BanII GRGCYC 2 cut(s) 597, 996
BauI CACGAG 1 cut(s) 995
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 2 cut(s) 198, 996
BbvI GCAGC 6 cut(s) 537, 680, 714, 874, 933, 1123
BccI CCATC 3 cut(s) 19, 686, 877
BceAI ACGGC 1 cut(s) 1021
BciT130I CCWGG 2 cut(s) 598, 956
BciVI GTATCC 1 cut(s) 1038
BclI TGATCA 1 cut(s) 1108
BcnI CCSGG 3 cut(s) 447, 488, 711
BcoDI GTCTC 1 cut(s) 583
BfoI RGCGCY 1 cut(s) 674
BfuI GTATCC 1 cut(s) 1038
BglI GCCNNNNNGGC 1 cut(s) 1042
Bme1390I CCNGG 5 cut(s) 447, 488, 598, 711, 956
Bme18I GGWCC 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 753
BmgBI CACGTC 1 cut(s) 664
BmgT120I GGNCC 3 cut(s) 501, 550, 976
BmiI GGNNCC 1 cut(s) 551
BmrFI CCNGG 5 cut(s) 447, 488, 598, 711, 956
BmrI ACTGGG 2 cut(s) 530, 973
BmuI ACTGGG 2 cut(s) 530, 973
BpiI GAAGAC 1 cut(s) 822
BpmI CTGGAG 1 cut(s) 230
BpuMI CCSGG 3 cut(s) 447, 488, 711
BsaAI YACGTR 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 583
BsaJI CCNNGG 8 cut(s) 445, 596, 709, 752, 768, 789, 955, 1037
Bsc4I CCNNNNNNNGG 6 cut(s) 420, 446, 664, 956, 984, 1167
Bse1I ACTGG 2 cut(s) 536, 979
BseBI CCWGG 2 cut(s) 598, 956
BseDI CCNNGG 8 cut(s) 445, 596, 709, 752, 768, 789, 955, 1037
BseGI GGATG 2 cut(s) 872, 1111
BseLI CCNNNNNNNGG 6 cut(s) 420, 446, 664, 956, 984, 1167
BseMII CTCAG 2 cut(s) 69, 594
BseNI ACTGG 2 cut(s) 536, 979
BseRI GAGGAG 6 cut(s) 88, 376, 379, 741, 804, 938
BseSI GKGCMC 2 cut(s) 198, 658
BseXI GCAGC 6 cut(s) 537, 680, 714, 874, 933, 1123
BseYI CCCAGC 1 cut(s) 928
Bsh1236I CGCG 5 cut(s) 591, 650, 652, 695, 770
BshFI GGCC 4 cut(s) 503, 647, 977, 1160
BsiHKAI GWGCWC 2 cut(s) 198, 996
BsiHKCI CYCGRG 1 cut(s) 753
BsiSI CCGG 4 cut(s) 447, 488, 711, 920
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 6 cut(s) 420, 446, 664, 956, 984, 1167
BsmAI GTCTC 1 cut(s) 583
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 2 cut(s) 327, 561
BsnI GGCC 4 cut(s) 503, 647, 977, 1160
Bso31I GGTCTC 1 cut(s) 583
BsoBI CYCGRG 1 cut(s) 753
Bsp1286I GDGCHC 4 cut(s) 198, 597, 658, 996
Bsp143I GATC 4 cut(s) 490, 612, 696, 1108
Bsp19I CCATGG 1 cut(s) 789
BspANI GGCC 4 cut(s) 503, 647, 977, 1160
BspCNI CTCAG 2 cut(s) 68, 593
BspFNI CGCG 5 cut(s) 591, 650, 652, 695, 770
BspLI GGNNCC 1 cut(s) 551
BspPI GGATC 3 cut(s) 498, 620, 691
BspTNI GGTCTC 1 cut(s) 583
BsrI ACTGG 2 cut(s) 536, 979
BssECI CCNNGG 8 cut(s) 445, 596, 709, 752, 768, 789, 955, 1037
BssMI GATC 4 cut(s) 490, 612, 696, 1108
BssSI CACGAG 1 cut(s) 995
BssT1I CCWWGG 1 cut(s) 789
Bst2BI CACGAG 1 cut(s) 995
Bst2UI CCWGG 2 cut(s) 598, 956
Bst4CI ACNGT 4 cut(s) 822, 861, 1052, 1094
Bst6I CTCTTC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 193
BstC8I GCNNGC 6 cut(s) 501, 510, 530, 593, 654, 992
BstDEI CTNAG 2 cut(s) 55, 580
BstDSI CCRYGG 3 cut(s) 768, 789, 1037
BstF5I GGATG 2 cut(s) 872, 1111
BstFNI CGCG 5 cut(s) 591, 650, 652, 695, 770
BstH2I RGCGCY 1 cut(s) 674
BstHHI GCGC 2 cut(s) 652, 673
BstKTI GATC 4 cut(s) 493, 615, 699, 1111
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 4 cut(s) 490, 612, 696, 1108
BstMWI GCNNNNNNNGC 6 cut(s) 505, 509, 653, 779, 925, 1042
BstNI CCWGG 2 cut(s) 598, 956
BstSCI CCNGG 5 cut(s) 445, 486, 596, 709, 954
BstSLI GKGCMC 2 cut(s) 198, 658
BstUI CGCG 5 cut(s) 591, 650, 652, 695, 770
BstV1I GCAGC 6 cut(s) 537, 680, 714, 874, 933, 1123
BstV2I GAAGAC 1 cut(s) 822
BstX2I RGATCY 1 cut(s) 612
BstYI RGATCY 1 cut(s) 612
BsuI GTATCC 1 cut(s) 1038
BsuRI GGCC 4 cut(s) 503, 647, 977, 1160
BtgI CCRYGG 3 cut(s) 768, 789, 1037
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 2 cut(s) 872, 1111
Cac8I GCNNGC 6 cut(s) 501, 510, 530, 593, 654, 992
CfoI GCGC 2 cut(s) 652, 673
Cfr13I GGNCC 3 cut(s) 501, 550, 976
Cfr42I CCGCGG 1 cut(s) 771
CseI GACGC 1 cut(s) 917
Csp6I GTAC 2 cut(s) 624, 897
CviAII CATG 2 cut(s) 564, 790
CviQI GTAC 2 cut(s) 624, 897
DdeI CTNAG 2 cut(s) 55, 580
DpnI GATC 4 cut(s) 492, 614, 698, 1110
DpnII GATC 4 cut(s) 490, 612, 696, 1108
DraIII CACNNNGTG 1 cut(s) 664
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 2 cut(s) 798, 1023
Ecl136II GAGCTC 1 cut(s) 994
Eco130I CCWWGG 1 cut(s) 789
Eco147I AGGCCT 1 cut(s) 1160
Eco24I GRGCYC 2 cut(s) 597, 996
Eco31I GGTCTC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 550
Eco47III AGCGCT 1 cut(s) 672
Eco53kI GAGCTC 1 cut(s) 994
Eco88I CYCGRG 1 cut(s) 753
EcoICRI GAGCTC 1 cut(s) 994
EcoRII CCWGG 2 cut(s) 596, 954
EcoT14I CCWWGG 1 cut(s) 789
EcoT38I GRGCYC 2 cut(s) 597, 996
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 2 cut(s) 567, 793
FaiI YATR 9 cut(s) 260, 262, 264, 269, 338, 565, 761, 791, 1077
FaqI GGGAC 1 cut(s) 770
FatI CATG 2 cut(s) 563, 789
FauI CCCGC 1 cut(s) 492
FbaI TGATCA 1 cut(s) 1108
FokI GGATG 2 cut(s) 859, 1118
FriOI GRGCYC 2 cut(s) 597, 996
GlaI GCGC 2 cut(s) 651, 672
GsaI CCCAGC 1 cut(s) 932
GsuI CTGGAG 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 674
HaeIII GGCC 4 cut(s) 503, 647, 977, 1160
HapII CCGG 4 cut(s) 447, 488, 711, 920
HgaI GACGC 1 cut(s) 917
HhaI GCGC 2 cut(s) 652, 673
Hin1II CATG 2 cut(s) 567, 793
Hin6I GCGC 2 cut(s) 650, 671
HinP1I GCGC 2 cut(s) 650, 671
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 8 cut(s) 43, 53, 289, 607, 714, 740, 971, 1007
HpaII CCGG 4 cut(s) 447, 488, 711, 920
HphI GGTGA 2 cut(s) 163, 858
Hpy166II GTNNAC 4 cut(s) 7, 196, 343, 541
Hpy188I TCNGA 6 cut(s) 48, 441, 495, 554, 583, 612
Hpy188III TCNNGA 4 cut(s) 286, 464, 631, 755
Hpy8I GTNNAC 4 cut(s) 7, 196, 343, 541
Hpy99I CGWCG 6 cut(s) 665, 722, 826, 841, 844, 847
HpyAV CCTTC 2 cut(s) 127, 414
HpyCH4III ACNGT 4 cut(s) 822, 861, 1052, 1094
HpyCH4IV ACGT 2 cut(s) 192, 663
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 6 cut(s) 505, 509, 653, 779, 925, 1042
HpyF3I CTNAG 2 cut(s) 55, 580
HpySE526I ACGT 2 cut(s) 192, 663
Hsp92II CATG 2 cut(s) 567, 793
HspAI GCGC 2 cut(s) 650, 671
Ksp22I TGATCA 1 cut(s) 1108
KspI CCGCGG 1 cut(s) 771
Kzo9I GATC 4 cut(s) 490, 612, 696, 1108
LmnI GCTCC 4 cut(s) 811, 925, 943, 987
Lsp1109I GCAGC 6 cut(s) 537, 680, 714, 874, 933, 1123
MaeII ACGT 2 cut(s) 192, 663
MaeIII GTNAC 3 cut(s) 251, 276, 855
MalI GATC 4 cut(s) 492, 614, 698, 1110
MboI GATC 4 cut(s) 490, 612, 696, 1108
MboII GAAGA 8 cut(s) 56, 140, 364, 613, 616, 822, 825, 1076
MflI RGATCY 1 cut(s) 612
MhlI GDGCHC 4 cut(s) 198, 597, 658, 996
MluCI AATT 1 cut(s) 138
MlyI GAGTC 5 cut(s) 47, 52, 708, 734, 980
MmeI TCCRAC 2 cut(s) 227, 498
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 3 cut(s) 32, 1118, 1177
MspA1I CMGCKG 2 cut(s) 770, 1136
MspI CCGG 4 cut(s) 447, 488, 711, 920
MspR9I CCNGG 5 cut(s) 447, 488, 598, 711, 956
Mva1269I GAATGC 2 cut(s) 327, 561
MvaI CCWGG 2 cut(s) 598, 956
MvnI CGCG 5 cut(s) 591, 650, 652, 695, 770
MwoI GCNNNNNNNGC 6 cut(s) 505, 509, 653, 779, 925, 1042
NciI CCSGG 3 cut(s) 447, 488, 711
NcoI CCATGG 1 cut(s) 789
NdeII GATC 4 cut(s) 490, 612, 696, 1108
NlaIII CATG 2 cut(s) 567, 793
NlaIV GGNNCC 1 cut(s) 551
NmeAIII GCCGAG 2 cut(s) 975, 1165
NmuCI GTSAC 2 cut(s) 276, 855
PceI AGGCCT 1 cut(s) 1160
PcsI WCGNNNNNNNCGW 1 cut(s) 842
PctI GAATGC 2 cut(s) 327, 561
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 289, 607, 1007
PflMI CCANNNNNTGG 1 cut(s) 664
PleI GAGTC 5 cut(s) 47, 51, 708, 734, 979
PpsI GAGTC 5 cut(s) 47, 51, 708, 734, 979
Ppu21I YACGTR 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 996
Psp6I CCWGG 2 cut(s) 596, 954
PspFI CCCAGC 1 cut(s) 928
PspGI CCWGG 2 cut(s) 596, 954
PspN4I GGNNCC 1 cut(s) 551
PspPI GGNCC 3 cut(s) 501, 550, 976
PsuI RGATCY 1 cut(s) 612
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 2 cut(s) 625, 898
RsaNI GTAC 2 cut(s) 624, 897
SacI GAGCTC 1 cut(s) 996
SacII CCGCGG 1 cut(s) 771
SaqAI TTAA 3 cut(s) 32, 1118, 1177
Sau3AI GATC 4 cut(s) 490, 612, 696, 1108
Sau96I GGNCC 3 cut(s) 501, 550, 976
SchI GAGTC 5 cut(s) 47, 52, 708, 734, 980
ScrFI CCNGG 5 cut(s) 447, 488, 598, 711, 956
SduI GDGCHC 4 cut(s) 198, 597, 658, 996
SetI ASST 9 cut(s) 195, 366, 380, 666, 930, 948, 968, 996, 1138
Sfr303I CCGCGG 1 cut(s) 771
SgrBI CCGCGG 1 cut(s) 771
SinI GGWCC 1 cut(s) 550
Sse9I AATT 1 cut(s) 138
SseBI AGGCCT 1 cut(s) 1160
SstI GAGCTC 1 cut(s) 996
StuI AGGCCT 1 cut(s) 1160
StyD4I CCNGG 5 cut(s) 445, 486, 596, 709, 954
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 4 cut(s) 822, 861, 1052, 1094
TaiI ACGT 2 cut(s) 195, 666
TaqI TCGA 6 cut(s) 101, 366, 632, 733, 743, 1059
TaqII GACCGA 2 cut(s) 65, 264
TasI AATT 1 cut(s) 138
TauI GCSGC 4 cut(s) 650, 770, 773, 785
TfiI GAWTC 3 cut(s) 289, 607, 1007
Tru1I TTAA 3 cut(s) 32, 1118, 1177
Tru9I TTAA 3 cut(s) 32, 1118, 1177
TseFI GTSAC 2 cut(s) 276, 855
TseI GCWGC 6 cut(s) 525, 668, 727, 887, 946, 1136
Tsp45I GTSAC 2 cut(s) 276, 855
TspDTI ATGAA 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 664
VneI GTGCAC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.