Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003315

Physical Location & Seq

Genomic Coordinates Reverse (-)

5473387 .. 5474930

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTCCAAACCACCTGGATTTAAGTACAAAAGTGGGCAGTACATATTTCTTCAATGCCCTACAATCTCCCCATTTGAATGGCATCCATTTTCCATTACCTCCGCACCAGGAGACGAGTACCTCAGCGTTCACATCCGAACAGTAGGAGACTGGACTCGAGAATTGAAGCGAGCCATAGCGGAGGAAGATGATTCATCTGTAGTTCATCCAGCAAGATTTGCTCAGATGCGAAATCTGGATCAGAGAGGCCAACCCAGATTGTTTGTTGACGGTCCATATGGGGCGCCAGCGCAGGACTACCAGCACTACGATGTCTTGCTCCTCGTGGGGCTTGGGATCGGAGCTACCCCTTTTATAAGCATTCTTAGAGATCTTCTTGACAGAGCAAGAACAGCAGAAGAACAAATGGATTCAAATACGGAAACTAGTAGATCAGACGACAGCCCGAATAGTTTTATGTCTTCAAGTTTGACGCCCGTTGACAAGAAGAAATCTCAGAAGACTACAAATGCTCACTTCTACTGGGTTACCAGAGAGCCTGGATCTTTTGAGTGGTTTAAAGGAGTCATGGACGAGGTTGCAGAAATGGATCACAAAGGTCAGATTGAGCTCCACAACTATCTTACGAGTGTCTATGAAGAGGGTGACGCCAGGTCGACTCTAATCACCATGGTCCAAGCTCTCAACCACGCCAAACATGGTGTCGACATCCTATCTGGCACCCGAGTAAGAACTCACTTCGCAAGACCAGACTGGAAACAAGTGTTTACCAAGATAGCTTCCAAGCATCCGTATTCAACAGTAGGGGTATTCTACTGTGGGGTGCCAATGCTGGCAAAGGAGCTGAAGGTGCTATCGCATGAACTCAGCCAGAAGACAACGACACGGTTTGAATTCCACAAGGAGTATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

305

Amino Acids

34.68

Weight (kDa)

6.5

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19230 AT1G19230
fragaria_vesca	FvH4_1g09270 FvH4_1g09270 FvH4_1g09270 FvH4_1g09270
malus_domestica	MD02G1099900.v1.1 MD12G1213800.v1.1 MD15G1222800.v1.1
prunus_persica	Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1
pyrus_communis	pycom02g07780 pycom03g08560 pycom06g11890
rosa_chinensis	RchiOBHm_Chr2g0095831 RchiOBHm_Chr2g0103601
rosa_laevigata	RLG00000016598 RLG00000017348
rosa_multiflora	Rmu_co8313273.1_g000001 Rmu_sc0000496.1_g000009 Rmu_sc0008750.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146050
rosa_rugosa	Rorug02G0053200 Rorug02G0053200 Rorug02G0116200 Rorug02G0116300.1
rosa_samantha	Rh2AG102100 Rh2BG103600 Rh2CG106000 Rh2CG171000 Rh2DG103700 Rh4BG287500
rosa_wichuraiana	Rw2G007750 Rw2G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AccB1I	GGYRCC	3 cut(s)	283, 719, 823
AccI	GTMKAC	2 cut(s)	656, 705
AciI	CCGC	2 cut(s)	102, 179
AclWI	GGATC	4 cut(s)	246, 344, 550, 597
AcsI	RAATTY	1 cut(s)	893
AcuI	CTGAAG	1 cut(s)	866
AcyI	GRCGYC	3 cut(s)	284, 473, 648
AfaI	GTAC	3 cut(s)	26, 41, 119
AgsI	TTSAA	7 cut(s)	53, 77, 166, 414, 465, 798, 893
AhdI	GACNNNNNGTC	1 cut(s)	652
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	4 cut(s)	13, 106, 538, 650
AluBI	AGCT	5 cut(s)	344, 610, 680, 779, 844
AluI	AGCT	5 cut(s)	344, 610, 680, 779, 844
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	2 cut(s)	105, 141
AlwI	GGATC	4 cut(s)	246, 344, 550, 597
Ama87I	CYCGRG	2 cut(s)	156, 723
AoxI	GGCC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	893
ArsI	GACNNNNNNTTYG	2 cut(s)	687, 719
AspLEI	GCGC	2 cut(s)	286, 292
AspS9I	GGNCC	2 cut(s)	272, 673
AsuHPI	GGTGA	2 cut(s)	656, 658
AvaI	CYCGRG	2 cut(s)	156, 723
AvaII	GGWCC	2 cut(s)	272, 673
BanI	GGYRCC	3 cut(s)	283, 719, 823
BanII	GRGCYC	1 cut(s)	612
BauI	CACGAG	1 cut(s)	323
BbsI	GAAGAC	3 cut(s)	453, 506, 881
Bbv12I	GWGCWC	1 cut(s)	612
BbvCI	CCTCAGC	1 cut(s)	122
BciT130I	CCWGG	4 cut(s)	15, 108, 540, 652
BcoDI	GTCTC	2 cut(s)	105, 141
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	287
BglII	AGATCT	1 cut(s)	370
Bme1390I	CCNGG	4 cut(s)	15, 108, 540, 652
Bme18I	GGWCC	2 cut(s)	272, 673
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmeT110I	CYCGRG	2 cut(s)	156, 723
BmgT120I	GGNCC	2 cut(s)	272, 673
BmiI	GGNNCC	3 cut(s)	285, 721, 825
BmrFI	CCNGG	4 cut(s)	15, 108, 540, 652
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	3 cut(s)	91, 216, 796
BmuI	ACTGGG	1 cut(s)	532
BpiI	GAAGAC	3 cut(s)	453, 506, 881
Bpu10I	CCTNAGC	1 cut(s)	122
BsaHI	GRCGYC	3 cut(s)	284, 473, 648
BsaJI	CCNNGG	1 cut(s)	669
Bse1I	ACTGG	3 cut(s)	155, 527, 758
BseBI	CCWGG	4 cut(s)	15, 108, 540, 652
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	5 cut(s)	82, 132, 205, 708, 787
BseMII	CTCAG	4 cut(s)	136, 236, 509, 880
BseNI	ACTGG	3 cut(s)	155, 527, 758
BseRI	GAGGAG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	3 cut(s)	283, 719, 823
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	2 cut(s)	156, 723
BsmAI	GTCTC	2 cut(s)	105, 141
BsmBI	CGTCTC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	2 cut(s)	156, 723
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	6 cut(s)	238, 336, 370, 431, 542, 589
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	2 cut(s)	102, 179
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	4 cut(s)	135, 235, 508, 879
BspLI	GGNNCC	3 cut(s)	285, 721, 825
BspPI	GGATC	4 cut(s)	246, 344, 550, 597
BspT107I	GGYRCC	3 cut(s)	283, 719, 823
BsrI	ACTGG	3 cut(s)	155, 527, 758
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	6 cut(s)	238, 336, 370, 431, 542, 589
BssNI	GRCGYC	3 cut(s)	284, 473, 648
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	669
Bst2BI	CACGAG	1 cut(s)	323
Bst2UI	CCWGG	4 cut(s)	15, 108, 540, 652
Bst4CI	ACNGT	5 cut(s)	142, 272, 802, 818, 888
Bst6I	CTCTTC	1 cut(s)	633
BstACI	GRCGYC	3 cut(s)	284, 473, 648
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	171, 288, 834
BstDEI	CTNAG	5 cut(s)	122, 222, 365, 495, 866
BstDSI	CCRYGG	1 cut(s)	669
BstEII	GGTNACC	1 cut(s)	526
BstF5I	GGATG	5 cut(s)	82, 132, 205, 708, 787
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	286, 292
BstKTI	GATC	6 cut(s)	241, 339, 373, 434, 545, 592
BstMAI	GTCTC	2 cut(s)	105, 141
BstMBI	GATC	6 cut(s)	238, 336, 370, 431, 542, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 392, 850
BstNI	CCWGG	4 cut(s)	15, 108, 540, 652
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	4 cut(s)	13, 106, 538, 650
BstSFI	CTRYAG	1 cut(s)	198
BstV2I	GAAGAC	3 cut(s)	453, 506, 881
BstX2I	RGATCY	2 cut(s)	370, 542
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	2 cut(s)	370, 542
BsuRI	GGCC	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	5 cut(s)	82, 132, 205, 708, 787
Cac8I	GCNNGC	3 cut(s)	171, 288, 834
CfoI	GCGC	2 cut(s)	286, 292
Cfr13I	GGNCC	2 cut(s)	272, 673
CseI	GACGC	2 cut(s)	481, 656
Csp6I	GTAC	3 cut(s)	25, 40, 118
CviAII	CATG	4 cut(s)	568, 670, 698, 860
CviQI	GTAC	3 cut(s)	25, 40, 118
DdeI	CTNAG	5 cut(s)	122, 222, 365, 495, 866
DinI	GGCGCC	1 cut(s)	285
DpnI	GATC	6 cut(s)	240, 338, 372, 433, 544, 591
DpnII	GATC	6 cut(s)	238, 336, 370, 431, 542, 589
DraI	TTTAAA	1 cut(s)	559
DriI	GACNNNNNGTC	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	633
Eam1105I	GACNNNNNGTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	612
Eco47I	GGWCC	2 cut(s)	272, 673
Eco53kI	GAGCTC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	866
Eco88I	CYCGRG	2 cut(s)	156, 723
Eco91I	GGTNACC	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	610
EcoO65I	GGTNACC	1 cut(s)	526
EcoRI	GAATTC	1 cut(s)	893
EcoRII	CCWGG	4 cut(s)	13, 106, 538, 650
EcoT14I	CCWWGG	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	612
EgeI	GGCGCC	1 cut(s)	285
EheI	GGCGCC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	669
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	4 cut(s)	571, 673, 701, 863
FatI	CATG	4 cut(s)	567, 669, 697, 859
FauNDI	CATATG	1 cut(s)	277
FblI	GTMKAC	2 cut(s)	656, 705
FokI	GGATG	5 cut(s)	69, 119, 192, 695, 774
FriOI	GRGCYC	1 cut(s)	612
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	2 cut(s)	285, 291
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	249
HgaI	GACGC	2 cut(s)	481, 656
HhaI	GCGC	2 cut(s)	286, 292
Hin1I	GRCGYC	3 cut(s)	284, 473, 648
Hin1II	CATG	4 cut(s)	571, 673, 701, 863
Hin6I	GCGC	2 cut(s)	284, 290
HinP1I	GCGC	2 cut(s)	284, 290
HincII	GTYRAC	4 cut(s)	268, 481, 657, 706
HindII	GTYRAC	4 cut(s)	268, 481, 657, 706
HinfI	GANTC	5 cut(s)	154, 191, 410, 564, 658
HphI	GGTGA	2 cut(s)	656, 658
Hpy166II	GTNNAC	6 cut(s)	130, 268, 481, 657, 706, 768
Hpy188I	TCNGA	7 cut(s)	137, 225, 243, 341, 436, 498, 603
Hpy188III	TCNNGA	3 cut(s)	158, 236, 377
Hpy8I	GTNNAC	6 cut(s)	130, 268, 481, 657, 706, 768
HpyAV	CCTTC	1 cut(s)	841
HpyCH4III	ACNGT	5 cut(s)	142, 272, 802, 818, 888
HpyCH4V	TGCA	1 cut(s)	581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 392, 850
HpyF3I	CTNAG	5 cut(s)	122, 222, 365, 495, 866
Hsp92I	GRCGYC	3 cut(s)	284, 473, 648
Hsp92II	CATG	4 cut(s)	571, 673, 701, 863
HspAI	GCGC	2 cut(s)	284, 290
KasI	GGCGCC	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	238, 336, 370, 431, 542, 589
LmnI	GCTCC	4 cut(s)	324, 341, 615, 841
LweI	GCATC	3 cut(s)	91, 216, 796
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	526, 644
MalI	GATC	6 cut(s)	240, 338, 372, 433, 544, 591
MboI	GATC	6 cut(s)	238, 336, 370, 431, 542, 589
MboII	GAAGA	9 cut(s)	41, 197, 365, 410, 453, 499, 511, 650, 886
MflI	RGATCY	2 cut(s)	370, 542
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	2 cut(s)	161, 893
Mly113I	GGCGCC	1 cut(s)	284
MlyI	GAGTC	3 cut(s)	148, 573, 652
MnlI	CCTC	7 cut(s)	109, 131, 175, 239, 332, 568, 634
MseI	TTAA	3 cut(s)	21, 558, 913
MslI	CAYNNNNRTG	2 cut(s)	76, 309
MspR9I	CCNGG	4 cut(s)	15, 108, 540, 652
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	4 cut(s)	15, 108, 540, 652
MwoI	GCNNNNNNNGC	3 cut(s)	218, 392, 850
NarI	GGCGCC	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	669
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	6 cut(s)	238, 336, 370, 431, 542, 589
NlaIII	CATG	4 cut(s)	571, 673, 701, 863
NlaIV	GGNNCC	3 cut(s)	285, 721, 825
NmuCI	GTSAC	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	156
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	191, 410
PleI	GAGTC	3 cut(s)	148, 572, 652
PluTI	GGCGCC	1 cut(s)	287
PpsI	GAGTC	3 cut(s)	148, 572, 652
PsiI	TTATAA	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	612
Psp6I	CCWGG	4 cut(s)	13, 106, 538, 650
PspEI	GGTNACC	1 cut(s)	526
PspGI	CCWGG	4 cut(s)	13, 106, 538, 650
PspN4I	GGNNCC	3 cut(s)	285, 721, 825
PspPI	GGNCC	2 cut(s)	272, 673
PsuI	RGATCY	2 cut(s)	370, 542
RsaI	GTAC	3 cut(s)	26, 41, 119
RsaNI	GTAC	3 cut(s)	25, 40, 118
RseI	CAYNNNNRTG	2 cut(s)	76, 309
SacI	GAGCTC	1 cut(s)	612
SalI	GTCGAC	2 cut(s)	655, 704
SaqAI	TTAA	3 cut(s)	21, 558, 913
Sau3AI	GATC	6 cut(s)	238, 336, 370, 431, 542, 589
Sau96I	GGNCC	2 cut(s)	272, 673
SchI	GAGTC	3 cut(s)	148, 573, 652
ScrFI	CCNGG	4 cut(s)	15, 108, 540, 652
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	3 cut(s)	91, 216, 796
SfcI	CTRYAG	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	272, 673
SlaI	CTCGAG	1 cut(s)	156
SmiMI	CAYNNNNRTG	2 cut(s)	76, 309
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	2 cut(s)	161, 893
SsiI	CCGC	2 cut(s)	102, 179
SspDI	GGCGCC	1 cut(s)	283
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	4 cut(s)	13, 106, 538, 650
StyI	CCWWGG	1 cut(s)	669
TaaI	ACNGT	5 cut(s)	142, 272, 802, 818, 888
TaqI	TCGA	3 cut(s)	157, 656, 705
TasI	AATT	2 cut(s)	161, 893
TatI	WGTACW	2 cut(s)	24, 39
TfiI	GAWTC	2 cut(s)	191, 410
Tru1I	TTAA	3 cut(s)	21, 558, 913
Tru9I	TTAA	3 cut(s)	21, 558, 913
TseFI	GTSAC	1 cut(s)	644
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	4 cut(s)	183, 194, 651, 876
TspGWI	ACGGA	2 cut(s)	434, 780
VpaK11BI	GGWCC	2 cut(s)	272, 673
XapI	RAATTY	1 cut(s)	893
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XhoI	CTCGAG	1 cut(s)	156
XmiI	GTMKAC	2 cut(s)	656, 705
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.