Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003315

Physical Location & Seq

Genomic Coordinates Forward (+)

17085305 .. 17086579

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAATGAGGTGGCGGAATTGGACCACAACAGGGTGGTTGAATTTCACAATTATTGCACTAGTGTGTATGAAGAAGGTGATGCACGTTCTGCCCTCATTGCCATGCTTCAGTCTTTGAGTCATGCAAAGAATGGTGTCGACATTGTCTCCGGCACACGTGTGAAATCGCACTTTGCCAAGCCAAACTGGCGTGAGGTCTACAAGCGGATTGCACTCGATCACACCGATGCTACAGTTGGGGTGTTCTACTGCGGGCCACCGGCGCTTACCGAAAAGCTACGCCAGCTGTCCCTCGACTTCTCTCACAAAACCTCCACCCGATTTGAGTTCCACAAAGAAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

116

Amino Acids

13.16

Weight (kDa)

6.64

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19230 AT1G19230
fragaria_vesca	FvH4_1g09270 FvH4_1g09270 FvH4_1g09270 FvH4_1g09270
malus_domestica	MD02G1099900.v1.1 MD12G1213800.v1.1 MD15G1222800.v1.1
prunus_persica	Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1
pyrus_communis	pycom02g07780 pycom03g08560 pycom06g11890
rosa_chinensis	RchiOBHm_Chr2g0095831 RchiOBHm_Chr2g0103601
rosa_laevigata	RLG00000016598 RLG00000017348
rosa_multiflora	Rmu_co8313273.1_g000001 Rmu_sc0000496.1_g000009 Rmu_sc0008750.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146050
rosa_rugosa	Rorug02G0053200 Rorug02G0053200 Rorug02G0116200 Rorug02G0116300.1
rosa_samantha	Rh2AG102100 Rh2BG103600 Rh2CG106000 Rh2CG171000 Rh2DG103700 Rh4BG287500
rosa_wichuraiana	Rw2G007750 Rw2G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	138, 198
AciI	CCGC	3 cut(s)	14, 205, 252
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	92
AcvI	CACGTG	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	2 cut(s)	155, 157
AgsI	TTSAA	1 cut(s)	41
AhlI	ACTAGT	1 cut(s)	59
AleI	CACNNNNGTG	2 cut(s)	62, 158
AluBI	AGCT	2 cut(s)	277, 286
AluI	AGCT	2 cut(s)	277, 286
Alw26I	GTCTC	1 cut(s)	151
AoxI	GGCC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	22, 254
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	22
BbrPI	CACGTG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	151
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	266
BglI	GCCNNNNNGGC	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	22, 254
BmsI	GCATC	2 cut(s)	70, 217
BsaAI	YACGTR	1 cut(s)	158
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	150, 260
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	3 cut(s)	14, 205, 252
BspANI	GGCC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	259
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	254, 284
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 98, 187, 262, 283
BstSFI	CTRYAG	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	254, 284
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	22, 254
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	2 cut(s)	103, 122
CviJI	RGCY	4 cut(s)	181, 256, 277, 286
CviKI_1	RGCY	4 cut(s)	181, 256, 277, 286
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EciI	GGCGGA	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	158
FaeI	CATG	2 cut(s)	106, 125
FaiI	YATR	3 cut(s)	69, 104, 123
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	2 cut(s)	102, 121
FauI	CCCGC	1 cut(s)	245
FblI	GTMKAC	2 cut(s)	138, 198
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	2 cut(s)	150, 260
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	106, 125
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	150, 260
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	139, 199
Hpy188I	TCNGA	1 cut(s)	347
Hpy8I	GTNNAC	2 cut(s)	139, 199
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	85, 157
HpyCH4V	TGCA	4 cut(s)	57, 83, 125, 212
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 98, 187, 262, 283
HpySE526I	ACGT	2 cut(s)	85, 157
Hsp92II	CATG	2 cut(s)	106, 125
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	16, 163, 172, 273, 296
LweI	GCATC	2 cut(s)	70, 217
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	85, 157
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	83
MluCI	AATT	3 cut(s)	17, 41, 49
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	104, 187, 302, 322
MslI	CAYNNNNRTG	4 cut(s)	62, 101, 158, 225
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	2 cut(s)	150, 260
MwoI	GCNNNNNNNGC	5 cut(s)	89, 98, 187, 262, 283
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	106, 125
OliI	CACNNNNGTG	2 cut(s)	62, 158
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PflFI	GACNNNGTC	1 cut(s)	143
PleI	GAGTC	1 cut(s)	126
PmaCI	CACGTG	1 cut(s)	158
PmlI	CACGTG	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	158
PspCI	CACGTG	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	22, 254
PsyI	GACNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	286
RseI	CAYNNNNRTG	4 cut(s)	62, 101, 158, 225
SalI	GTCGAC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	22, 254
SchI	GAGTC	1 cut(s)	127
SetI	ASST	8 cut(s)	12, 79, 88, 160, 198, 279, 288, 314
SfaNI	GCATC	2 cut(s)	70, 217
SfcI	CTRYAG	1 cut(s)	231
SgrAI	CRCCGGYG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	4 cut(s)	62, 101, 158, 225
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	3 cut(s)	17, 41, 49
SsiI	CCGC	3 cut(s)	14, 205, 252
SspMI	CTAG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	88, 160
TaqI	TCGA	3 cut(s)	138, 216, 294
TasI	AATT	3 cut(s)	17, 41, 49
TspDTI	ATGAA	2 cut(s)	17, 84
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	41
XmiI	GTMKAC	2 cut(s)	138, 198
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.