Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8313273.1

Orthogroup ID

OG0003315

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 838

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8313273.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

aacttcaagaccaagagggcctacttctactgggtgacccgagagcaaggttcgttcgactggttcaaaggggccatgaacaaggtggcggagctggaccataacagagtgatagagttgcacaactattgtactagtgtttatgaggaaggtgatgcacgttctgctctcattgctatgcttcagtcactcaatcatgccaagaatggggttgatattttgtcgggtactagggtgaagtcgcattttgctaagcccaactggcgtgaggtctacaagcgcattgcactggatcacaccaatgccaaagttgactatgaaagtcactgcctggatataattacaagtggtggtggtcctttggctcctgctgctcatgacagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

128

Amino Acids

14.58

Weight (kDa)

8.58

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19230 AT1G19230
fragaria_vesca	FvH4_1g09270 FvH4_1g09270 FvH4_1g09270 FvH4_1g09270
malus_domestica	MD02G1099900.v1.1 MD12G1213800.v1.1 MD15G1222800.v1.1
prunus_persica	Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1
pyrus_communis	pycom02g07780 pycom03g08560 pycom06g11890
rosa_chinensis	RchiOBHm_Chr2g0095831 RchiOBHm_Chr2g0103601
rosa_laevigata	RLG00000016598 RLG00000017348
rosa_multiflora	Rmu_co8313273.1_g000001 Rmu_sc0000496.1_g000009 Rmu_sc0008750.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146050
rosa_rugosa	Rorug02G0053200 Rorug02G0053200 Rorug02G0116200 Rorug02G0116300.1
rosa_samantha	Rh2AG102100 Rh2BG103600 Rh2CG106000 Rh2CG171000 Rh2DG103700 Rh4BG287500
rosa_wichuraiana	Rw2G007750 Rw2G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	133, 229
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	7, 67
AhlI	ACTAGT	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
AlwI	GGATC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	18, 72
ApeKI	GCWGC	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	4 cut(s)	18, 72, 97, 356
AsuHPI	GGTGA	3 cut(s)	46, 164, 247
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	97, 356
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BbvI	GCAGC	1 cut(s)	358
BciT130I	CCWGG	1 cut(s)	332
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	2 cut(s)	135, 231
BglI	GCCNNNNNGGC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	372
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	2 cut(s)	97, 356
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	4 cut(s)	18, 72, 97, 356
BmiI	GGNNCC	2 cut(s)	73, 366
BmrFI	CCNGG	1 cut(s)	332
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	145
BmuI	ACTGGG	1 cut(s)	40
Bpu1102I	GCTNAGC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	4 cut(s)	35, 65, 266, 294
Bse3DI	GCAATG	2 cut(s)	171, 282
BseBI	CCWGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	2 cut(s)	171, 282
BseNI	ACTGG	4 cut(s)	35, 65, 266, 294
BseXI	GCAGC	1 cut(s)	358
BshFI	GGCC	2 cut(s)	20, 74
BsiHKCI	CYCGRG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	207
BsnI	GGCC	2 cut(s)	20, 74
BsoBI	CYCGRG	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	292
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	20, 74
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	73, 366
BspPI	GGATC	1 cut(s)	300
BsrDI	GCAATG	2 cut(s)	171, 282
BsrI	ACTGG	4 cut(s)	35, 65, 266, 294
BssMI	GATC	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 173, 262, 371
BstNI	CCWGG	1 cut(s)	332
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	20, 74
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	287, 325
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	4 cut(s)	18, 72, 97, 356
Csp6I	GTAC	2 cut(s)	132, 228
CviAII	CATG	3 cut(s)	76, 197, 377
CviJI	RGCY	5 cut(s)	20, 74, 94, 256, 365
CviKI_1	RGCY	5 cut(s)	20, 74, 94, 256, 365
CviQI	GTAC	2 cut(s)	132, 228
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EciI	GGCGGA	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	97, 356
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	79, 200, 380
FaiI	YATR	8 cut(s)	77, 102, 144, 179, 198, 318, 338, 378
FatI	CATG	3 cut(s)	75, 196, 376
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	135, 231
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	20, 74
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	79, 200, 380
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HphI	GGTGA	3 cut(s)	46, 164, 247
Hpy166II	GTNNAC	2 cut(s)	274, 313
Hpy188III	TCNNGA	2 cut(s)	7, 377
Hpy8I	GTNNAC	2 cut(s)	274, 313
HpyAV	CCTTC	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	121, 158, 287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 173, 262, 371
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	79, 200, 380
HspAI	GCGC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	91, 370
LpnPI	CCDG	8 cut(s)	16, 46, 80, 247, 275, 317, 344, 381
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	135, 231
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	3 cut(s)	34, 186, 323
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MluCI	AATT	1 cut(s)	339
MnlI	CCTC	3 cut(s)	9, 139, 262
MslI	CAYNNNNRTG	2 cut(s)	176, 300
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	4 cut(s)	164, 173, 262, 371
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	79, 200, 380
NlaIV	GGNNCC	2 cut(s)	73, 366
NmuCI	GTSAC	3 cut(s)	34, 186, 323
PagI	TCATGA	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	330
PspEI	GGTNACC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	73, 366
PspPI	GGNCC	4 cut(s)	18, 72, 97, 356
RsaI	GTAC	2 cut(s)	133, 229
RsaNI	GTAC	2 cut(s)	132, 228
RseI	CAYNNNNRTG	2 cut(s)	176, 300
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	4 cut(s)	18, 72, 97, 356
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	6 cut(s)	52, 87, 96, 154, 163, 273
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	2 cut(s)	97, 356
SmiMI	CAYNNNNRTG	2 cut(s)	176, 300
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	2 cut(s)	135, 231
StyD4I	CCNGG	1 cut(s)	330
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	339
TatI	WGTACW	1 cut(s)	131
TscAI	CASTG	2 cut(s)	294, 332
TseFI	GTSAC	3 cut(s)	34, 186, 323
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	3 cut(s)	34, 186, 323
TspDTI	ATGAA	2 cut(s)	92, 333
TspRI	CASTG	2 cut(s)	294, 332
VpaK11BI	GGWCC	2 cut(s)	97, 356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	2 cut(s)	135, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.