Rh4BG287500

Respiratory burst oxidase homolog protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
46053116 .. 46054592
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG287500.1

Sequence Viewer

Length: 1101 bp
ATGTTGCATTATGATGACAATGACTCTACTTTTACGGGTTTGCAGACATGGATGTATTTGGCAGTGCCGGTTTTCCTCTACGCTTGTGAAAGGCTGATCAGATTTTTTAGATCAAGCATCAAGCCAGTGAAGATTCTCAAGGTTGCTGTTTATCCGGGAAATGTGCTTGCACTGCACATGTCTAAGCCGCAAGGCTTCAAATACAAGAGCGGGCAGTACATGTTCGTCAACTGCGCCGCAGTTTCTCCATTCGAATGGCATCCATTTTCAATTACCTCTTCACCGGGAGATGACTACCTGAGCGTCCACATTCGAACACTCGGGGATTGGACTGGGCAGCTCAAGACCGTTTTCTCATTGGTATGTCAGCCTTCAACTGCTGGTAAAAGTGGGCTACTCAGAGCTGACATGCAAGAAGAAAACAACCCCAGCTTTCCGAAGATACTAATCGACGGTCCATACGGAGCACCAGCACAAGACTACAAGAAATACGACGTTGTGTTGCTGGTCGGCCTCGGAATCGGGGCCACGCCCATGGTCAGCATTGTCAAAGACATCATCAACAACATGAATTTCTTGAAGAACAAGGAACTAGACGAGTACGCAGTTTTGGACGATGTACTAGAGAGTGGCAAGGCTGTTAATAACAACAGCAGCAGTAGTGGCAAGAGCAATAAAGGGTTCAGGACCCAGAAAGCTTATTACTATTGGGTCACGAGAGAACAGGGCTCGTTTGAATGGTTCAAAGGGATTCTCAATGAGGTGGCAGAGATGGACGAAAAGGGTGTGATAGAGTTGCACAATTACTGTACCAGTGTGTACGAGGAAGGTGATGCCAGGTCAGCACTGATAGCCATGCTTCAGAATCTCCACCATGCCAAGAATGGCGTAGATGTAGTCTCTGGGACGCGCGTCAAATCCCATTTCGCCAAACCCAATTGGCGTCAAGTCTACAAGAAAATCGCGCTGCATCATCCTGATAGCCGAGTTGGTGTGTTTTACTGTGGGGCACCGGCACTAACAAAGGAGCTGAGGCAATTGGCGCTGGACTTTTCTCACAGGACCTCCACCAAGTTCGAGTTTCATAAAGAGAATTTCTAG

Protein Analysis

366

Amino Acids

41.31

Weight (kDa)

8.58

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_8 PF08022 42 - 158 9.9e-37 FAD-binding domain
NAD_binding_6 PF08030 164 - 348 6.8e-50 Ferric reductase NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1009
AccBSI CCGCTC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 951
AccII CGCG 3 cut(s) 910, 912, 965
AciI CCGC 3 cut(s) 188, 210, 237
AcsI RAATTY 2 cut(s) 571, 1093
AcuI CTGAAG 1 cut(s) 845
AcyI GRCGYC 1 cut(s) 943
AfaI GTAC 5 cut(s) 218, 602, 621, 811, 821
AflIII ACRYGT 2 cut(s) 177, 219
AgsI TTSAA 6 cut(s) 199, 270, 375, 580, 737, 745
AjnI CCWGG 1 cut(s) 836
AluBI AGCT 5 cut(s) 340, 404, 432, 698, 1030
AluI AGCT 5 cut(s) 340, 404, 432, 698, 1030
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 1 cut(s) 904
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 2 cut(s) 511, 525
ApeKI GCWGC 3 cut(s) 337, 654, 967
ApoI RAATTY 2 cut(s) 571, 1093
AspLEI GCGC 4 cut(s) 236, 912, 967, 1045
AspS9I GGNCC 4 cut(s) 455, 525, 687, 1062
AsuC2I CCSGG 2 cut(s) 156, 285
AsuHPI GGTGA 2 cut(s) 273, 842
AsuII TTCGAA 2 cut(s) 252, 313
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 3 cut(s) 455, 687, 1062
BaeGI GKGCMC 1 cut(s) 1012
BanI GGYRCC 1 cut(s) 1009
BanII GRGCYC 1 cut(s) 731
BauI CACGAG 1 cut(s) 715
Bbv12I GWGCWC 1 cut(s) 469
BbvCI CCTCAGC 1 cut(s) 1031
BbvI GCAGC 3 cut(s) 349, 666, 954
BccI CCATC 1 cut(s) 766
BciT130I CCWGG 1 cut(s) 838
BclI TGATCA 1 cut(s) 96
BcnI CCSGG 2 cut(s) 156, 285
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 3 cut(s) 593, 623, 1099
BfoI RGCGCY 1 cut(s) 1046
BisI GCNGC 5 cut(s) 188, 237, 338, 655, 968
BlsI GCNGC 5 cut(s) 189, 238, 339, 656, 969
Bme1390I CCNGG 3 cut(s) 156, 285, 838
Bme18I GGWCC 3 cut(s) 455, 687, 1062
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 4 cut(s) 455, 525, 687, 1062
BmiI GGNNCC 3 cut(s) 526, 689, 1011
BmrFI CCNGG 3 cut(s) 156, 285, 838
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 4 cut(s) 126, 268, 823, 979
BmuI ACTGGG 1 cut(s) 342
BoxI GACNNNNGTC 1 cut(s) 911
Bpu10I CCTNAGC 2 cut(s) 299, 1031
Bpu14I TTCGAA 2 cut(s) 252, 313
BpuEI CTTGAG 2 cut(s) 122, 326
BpuMI CCSGG 2 cut(s) 156, 285
BsaBI GATNNNNATC 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 943
BsaJI CCNNGG 2 cut(s) 514, 534
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bse118I RCCGGY 2 cut(s) 67, 1012
Bse1I ACTGG 3 cut(s) 125, 337, 813
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 1 cut(s) 838
BseDI CCNNGG 2 cut(s) 514, 534
BseGI GGATG 3 cut(s) 57, 259, 973
BseJI GATNNNNATC 1 cut(s) 446
BseMII CTCAG 3 cut(s) 290, 412, 1022
BseNI ACTGG 3 cut(s) 125, 337, 813
BseSI GKGCMC 1 cut(s) 1012
BseXI GCAGC 3 cut(s) 349, 666, 954
BseYI CCCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 158
Bsh1236I CGCG 3 cut(s) 910, 912, 965
BshFI GGCC 2 cut(s) 513, 527
BshNI GGYRCC 1 cut(s) 1009
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 4 cut(s) 68, 155, 284, 1013
BslFI GGGAC 1 cut(s) 919
BsmAI GTCTC 1 cut(s) 904
BsmFI GGGAC 1 cut(s) 919
BsnI GGCC 2 cut(s) 513, 527
BsoBI CYCGRG 1 cut(s) 320
Bsp119I TTCGAA 2 cut(s) 252, 313
Bsp1286I GDGCHC 3 cut(s) 469, 731, 1012
Bsp143I GATC 2 cut(s) 96, 110
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 3 cut(s) 188, 210, 237
BspANI GGCC 2 cut(s) 513, 527
BspCNI CTCAG 3 cut(s) 291, 411, 1023
BspFNI CGCG 3 cut(s) 910, 912, 965
BspLI GGNNCC 3 cut(s) 526, 689, 1011
BspT104I TTCGAA 2 cut(s) 252, 313
BspT107I GGYRCC 1 cut(s) 1009
BsrBI CCGCTC 1 cut(s) 210
BsrFI RCCGGY 2 cut(s) 67, 1012
BsrI ACTGG 3 cut(s) 125, 337, 813
BssAI RCCGGY 2 cut(s) 67, 1012
BssECI CCNNGG 2 cut(s) 514, 534
BssMI GATC 2 cut(s) 96, 110
BssNI GRCGYC 1 cut(s) 943
BssSI CACGAG 1 cut(s) 715
BssT1I CCWWGG 1 cut(s) 534
Bst2BI CACGAG 1 cut(s) 715
Bst2UI CCWGG 1 cut(s) 838
Bst4CI ACNGT 4 cut(s) 349, 455, 809, 1004
Bst6I CTCTTC 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 943
BstBI TTCGAA 2 cut(s) 252, 313
BstC8I GCNNGC 2 cut(s) 168, 212
BstDEI CTNAG 4 cut(s) 183, 299, 398, 1031
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 57, 259, 973
BstFNI CGCG 3 cut(s) 910, 912, 965
BstH2I RGCGCY 1 cut(s) 1046
BstHHI GCGC 4 cut(s) 236, 912, 967, 1045
BstKTI GATC 2 cut(s) 99, 113
BstMAI GTCTC 1 cut(s) 904
BstMBI GATC 2 cut(s) 96, 110
BstMWI GCNNNNNNNGC 5 cut(s) 172, 663, 842, 851, 1042
BstNI CCWGG 1 cut(s) 838
BstNSI RCATGY 3 cut(s) 181, 223, 412
BstPAI GACNNNNGTC 1 cut(s) 911
BstSCI CCNGG 3 cut(s) 154, 283, 836
BstSLI GKGCMC 1 cut(s) 1012
BstUI CGCG 3 cut(s) 910, 912, 965
BstV1I GCAGC 3 cut(s) 349, 666, 954
BstXI CCANNNNNNTGG 2 cut(s) 255, 535
BsuRI GGCC 2 cut(s) 513, 527
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 3 cut(s) 57, 259, 973
BtsI GCAGTG 2 cut(s) 69, 170
BtsIMutI CAGTG 5 cut(s) 69, 132, 170, 820, 845
Cac8I GCNNGC 2 cut(s) 168, 212
CfoI GCGC 4 cut(s) 236, 912, 967, 1045
Cfr10I RCCGGY 2 cut(s) 67, 1012
Cfr13I GGNCC 4 cut(s) 455, 525, 687, 1062
CseI GACGC 4 cut(s) 292, 901, 916, 932
Csp6I GTAC 5 cut(s) 217, 601, 620, 810, 820
CviAII CATG 8 cut(s) 48, 178, 220, 409, 535, 568, 856, 875
CviQI GTAC 5 cut(s) 217, 601, 620, 810, 820
DdeI CTNAG 4 cut(s) 183, 299, 398, 1031
DpnI GATC 2 cut(s) 98, 112
DpnII GATC 2 cut(s) 96, 110
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 731
Eco47I GGWCC 3 cut(s) 455, 687, 1062
Eco57I CTGAAG 1 cut(s) 845
Eco88I CYCGRG 1 cut(s) 320
EcoO109I RGGNCCY 2 cut(s) 687, 1062
EcoRII CCWGG 1 cut(s) 836
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 731
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 8 cut(s) 51, 181, 223, 412, 538, 571, 859, 878
FaqI GGGAC 1 cut(s) 919
FatI CATG 8 cut(s) 47, 177, 219, 408, 534, 567, 855, 874
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 96
FblI GTMKAC 1 cut(s) 951
Fnu4HI GCNGC 5 cut(s) 188, 237, 338, 655, 968
FokI GGATG 3 cut(s) 64, 246, 960
FriOI GRGCYC 1 cut(s) 731
Fsp4HI GCNGC 5 cut(s) 188, 237, 338, 655, 968
FspBI CTAG 3 cut(s) 593, 623, 1099
GlaI GCGC 4 cut(s) 235, 911, 966, 1044
GluI GCNGC 5 cut(s) 188, 237, 338, 655, 968
GsaI CCCAGC 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 1046
HaeIII GGCC 2 cut(s) 513, 527
HapII CCGG 4 cut(s) 68, 155, 284, 1013
HgaI GACGC 4 cut(s) 292, 901, 916, 932
HhaI GCGC 4 cut(s) 236, 912, 967, 1045
Hin1I GRCGYC 1 cut(s) 943
Hin1II CATG 8 cut(s) 51, 181, 223, 412, 538, 571, 859, 878
Hin6I GCGC 4 cut(s) 234, 910, 965, 1043
HinP1I GCGC 4 cut(s) 234, 910, 965, 1043
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 5 cut(s) 23, 133, 519, 751, 865
HpaII CCGG 4 cut(s) 68, 155, 284, 1013
HphI GGTGA 2 cut(s) 273, 842
Hpy166II GTNNAC 4 cut(s) 229, 307, 820, 952
Hpy188I TCNGA 5 cut(s) 101, 401, 438, 518, 864
Hpy188III TCNNGA 5 cut(s) 343, 577, 685, 715, 977
Hpy8I GTNNAC 4 cut(s) 229, 307, 820, 952
Hpy99I CGWCG 2 cut(s) 455, 497
HpyAV CCTTC 2 cut(s) 381, 821
HpyCH4III ACNGT 4 cut(s) 349, 455, 809, 1004
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 7 cut(s) 7, 43, 170, 175, 412, 799, 970
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 663, 842, 851, 1042
HpyF3I CTNAG 4 cut(s) 183, 299, 398, 1031
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 1 cut(s) 943
Hsp92II CATG 8 cut(s) 51, 181, 223, 412, 538, 571, 859, 878
HspAI GCGC 4 cut(s) 234, 910, 965, 1043
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 2 cut(s) 96, 110
LmnI GCTCC 2 cut(s) 464, 1027
Lsp1109I GCAGC 3 cut(s) 349, 666, 954
LweI GCATC 4 cut(s) 126, 268, 823, 979
MaeI CTAG 3 cut(s) 593, 623, 1099
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 712
MalI GATC 2 cut(s) 98, 112
MbiI CCGCTC 1 cut(s) 210
MboI GATC 2 cut(s) 96, 110
MboII GAAGA 5 cut(s) 142, 270, 428, 451, 592
MfeI CAATTG 2 cut(s) 937, 1037
MhlI GDGCHC 3 cut(s) 469, 731, 1012
MluCI AATT 6 cut(s) 270, 571, 802, 937, 1037, 1093
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 7 cut(s) 86, 286, 524, 754, 817, 1026, 1075
MseI TTAA 1 cut(s) 642
MslI CAYNNNNRTG 4 cut(s) 12, 253, 361, 533
MspI CCGG 4 cut(s) 68, 155, 284, 1013
MspR9I CCNGG 3 cut(s) 156, 285, 838
MunI CAATTG 2 cut(s) 937, 1037
MvaI CCWGG 1 cut(s) 838
MvnI CGCG 3 cut(s) 910, 912, 965
MwoI GCNNNNNNNGC 5 cut(s) 172, 663, 842, 851, 1042
NciI CCSGG 2 cut(s) 156, 285
NcoI CCATGG 1 cut(s) 534
NdeII GATC 2 cut(s) 96, 110
NlaIII CATG 8 cut(s) 51, 181, 223, 412, 538, 571, 859, 878
NlaIV GGNNCC 3 cut(s) 526, 689, 1011
NmeAIII GCCGAG 1 cut(s) 1010
NmuCI GTSAC 1 cut(s) 712
NspI RCATGY 3 cut(s) 181, 223, 412
NspV TTCGAA 2 cut(s) 252, 313
PciI ACATGT 2 cut(s) 177, 219
PfeI GAWTC 4 cut(s) 133, 519, 751, 865
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 5 cut(s) 189, 238, 339, 656, 969
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PpuMI RGGWCCY 2 cut(s) 687, 1062
PscI ACATGT 2 cut(s) 177, 219
PshAI GACNNNNGTC 1 cut(s) 911
Psp5II RGGWCCY 2 cut(s) 687, 1062
Psp6I CCWGG 1 cut(s) 836
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 1 cut(s) 836
PspN4I GGNNCC 3 cut(s) 526, 689, 1011
PspPI GGNCC 4 cut(s) 455, 525, 687, 1062
PspPPI RGGWCCY 2 cut(s) 687, 1062
RsaI GTAC 5 cut(s) 218, 602, 621, 811, 821
RsaNI GTAC 5 cut(s) 217, 601, 620, 810, 820
RseI CAYNNNNRTG 4 cut(s) 12, 253, 361, 533
SaqAI TTAA 1 cut(s) 642
SatI GCNGC 5 cut(s) 188, 237, 338, 655, 968
Sau3AI GATC 2 cut(s) 96, 110
Sau96I GGNCC 4 cut(s) 455, 525, 687, 1062
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 3 cut(s) 156, 285, 838
SduI GDGCHC 3 cut(s) 469, 731, 1012
SfaNI GCATC 4 cut(s) 126, 268, 823, 979
SfuI TTCGAA 2 cut(s) 252, 313
SinI GGWCC 3 cut(s) 455, 687, 1062
SmiMI CAYNNNNRTG 4 cut(s) 12, 253, 361, 533
SmlI CTYRAG 2 cut(s) 137, 341
SmoI CTYRAG 2 cut(s) 137, 341
Sse9I AATT 6 cut(s) 270, 571, 802, 937, 1037, 1093
SsiI CCGC 3 cut(s) 188, 210, 237
SspMI CTAG 3 cut(s) 593, 623, 1099
StyD4I CCNGG 3 cut(s) 154, 283, 836
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 4 cut(s) 349, 455, 809, 1004
TaiI ACGT 1 cut(s) 498
TaqI TCGA 4 cut(s) 252, 313, 450, 1077
TasI AATT 6 cut(s) 270, 571, 802, 937, 1037, 1093
TatI WGTACW 2 cut(s) 216, 619
TauI GCSGC 2 cut(s) 190, 239
TfiI GAWTC 4 cut(s) 133, 519, 751, 865
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 5 cut(s) 69, 132, 177, 820, 852
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 3 cut(s) 337, 654, 967
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 2 cut(s) 584, 1073
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 5 cut(s) 69, 132, 177, 820, 852
VpaK11BI GGWCC 3 cut(s) 455, 687, 1062
XapI RAATTY 2 cut(s) 571, 1093
XceI RCATGY 3 cut(s) 181, 223, 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 881
XmiI GTMKAC 1 cut(s) 951
XspI CTAG 3 cut(s) 593, 623, 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.