Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008750.1

Orthogroup ID

OG0003315

Physical Location & Seq

Genomic Coordinates Reverse (-)

46362 .. 47693

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008750.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgttgatggggaaaccaataattgatttgatgactaataatcgatttatcatggtaagcagctttccaagagtgctaatagatggaccctatggagcaccagctcaagactacaagaaatacgaagtggtgttacttgtagggttgggaataggagcaaccccaatgataagcatcctcaaggacatagtaaacaacatcaaagccatagaggaggaatcagagaatgccctagaaagcggcacggccggttccggagccccagtgagcctccacggcaacttcaagaccaagagggcctacttctattgggtgactcgagagcaaggttcgttcgactggttcaaaggggccatgaacgaggtggcggagctggaccataacagagtgatagagttccacaactattgcactagtgtttatgaggaaggtgatgcacgttctgctctcattgctatgcttcagtcactcaatcatgccaagaatggggtcgatattgtgtccggtactagggtaaagtcacattttgctaagcctaactggcgtgaggtctacaagcgcattgcgctggatcacaccaatgccaaagttggggtgttctactgcgggccacctgctcttactgaagaactacgacagctagctctggatttcaaccacaaaacctccaccagatttgaattccataaagaaaatttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

233

Amino Acids

26.22

Weight (kDa)

6.71

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19230 AT1G19230
fragaria_vesca	FvH4_1g09270 FvH4_1g09270 FvH4_1g09270 FvH4_1g09270
malus_domestica	MD02G1099900.v1.1 MD12G1213800.v1.1 MD15G1222800.v1.1
prunus_persica	Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1 Prupe.7G193000_v2.0.a1
pyrus_communis	pycom02g07780 pycom03g08560 pycom06g11890
rosa_chinensis	RchiOBHm_Chr2g0095831 RchiOBHm_Chr2g0103601
rosa_laevigata	RLG00000016598 RLG00000017348
rosa_multiflora	Rmu_co8313273.1_g000001 Rmu_sc0000496.1_g000009 Rmu_sc0008750.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146050
rosa_rugosa	Rorug02G0053200 Rorug02G0053200 Rorug02G0116200 Rorug02G0116300.1
rosa_samantha	Rh2AG102100 Rh2BG103600 Rh2CG106000 Rh2CG171000 Rh2DG103700 Rh4BG287500
rosa_wichuraiana	Rw2G007750 Rw2G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	622
Acc36I	ACCTGC	1 cut(s)	622
AccI	GTMKAC	1 cut(s)	552
AccIII	TCCGGA	1 cut(s)	254
AciI	CCGC	3 cut(s)	240, 368, 606
AclWI	GGATC	1 cut(s)	579
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	680, 694
AcuI	CTGAAG	2 cut(s)	446, 645
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	3 cut(s)	486, 510, 591
AgsI	TTSAA	4 cut(s)	286, 346, 655, 680
AhlI	ACTAGT	1 cut(s)	413
AluBI	AGCT	5 cut(s)	63, 104, 373, 640, 644
AluI	AGCT	5 cut(s)	63, 104, 373, 640, 644
Alw21I	GWGCWC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	318
Aor13HI	TCCGGA	1 cut(s)	254
AoxI	GGCC	4 cut(s)	246, 297, 351, 608
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	2 cut(s)	680, 694
AspLEI	GCGC	2 cut(s)	561, 568
AspS9I	GGNCC	5 cut(s)	86, 297, 351, 376, 608
AsuHPI	GGTGA	2 cut(s)	325, 443
AsuNHI	GCTAGC	1 cut(s)	640
AvaI	CYCGRG	1 cut(s)	318
AvaII	GGWCC	2 cut(s)	86, 376
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanII	GRGCYC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	117, 149
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	2 cut(s)	261, 292
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	4 cut(s)	233, 414, 510, 641
BfuAI	ACCTGC	1 cut(s)	622
BglI	GCCNNNNNGGC	2 cut(s)	276, 541
BisI	GCNGC	2 cut(s)	61, 241
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	2 cut(s)	62, 242
Bme18I	GGWCC	2 cut(s)	86, 376
BmeT110I	CYCGRG	1 cut(s)	318
BmgT120I	GGNCC	5 cut(s)	86, 297, 351, 376, 608
BmiI	GGNNCC	4 cut(s)	88, 253, 259, 352
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	2 cut(s)	183, 424
BmtI	GCTAGC	1 cut(s)	644
BmuI	ACTGGG	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	90, 164
Bsa29I	ATCGAT	1 cut(s)	43
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	274
BsaWI	WCCGGW	2 cut(s)	254, 503
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 650, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	486, 510, 591
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	3 cut(s)	263, 344, 545
Bse3DI	GCAATG	2 cut(s)	450, 561
Bse8I	GATNNNNATC	1 cut(s)	173
BseAI	TCCGGA	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	174
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	3 cut(s)	486, 510, 591
BseMI	GCAATG	2 cut(s)	450, 561
BseNI	ACTGG	3 cut(s)	263, 344, 545
BseRI	GAGGAG	1 cut(s)	227
BseX3I	CGGCCG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	248, 299, 353, 610
BshVI	ATCGAT	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	249, 255, 504
BslI	CCNNNNNNNGG	3 cut(s)	486, 510, 591
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	248, 299, 353, 610
BsoBI	CYCGRG	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	100, 262
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	571
Bsp1720I	GCTNAGC	1 cut(s)	531
BspACI	CCGC	3 cut(s)	240, 368, 606
BspANI	GGCC	4 cut(s)	248, 299, 353, 610
BspDI	ATCGAT	1 cut(s)	43
BspEI	TCCGGA	1 cut(s)	254
BspLI	GGNNCC	4 cut(s)	88, 253, 259, 352
BspMI	ACCTGC	1 cut(s)	622
BspOI	GCTAGC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	579
BsrDI	GCAATG	2 cut(s)	450, 561
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	263, 344, 545
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	1 cut(s)	571
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	608, 642
BstDEI	CTNAG	1 cut(s)	531
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	561, 568
BstKTI	GATC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	571
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	5 cut(s)	276, 443, 452, 541, 565
BstV1I	GCAGC	1 cut(s)	72
BstZI	CGGCCG	1 cut(s)	246
Bsu15I	ATCGAT	1 cut(s)	43
BsuRI	GGCC	4 cut(s)	248, 299, 353, 610
BsuTUI	ATCGAT	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	608, 642
CfoI	GCGC	2 cut(s)	561, 568
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	5 cut(s)	86, 297, 351, 376, 608
ClaI	ATCGAT	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	507
CspCI	CAANNNNNGTGG	4 cut(s)	389, 424, 658, 693
CviAII	CATG	3 cut(s)	52, 355, 476
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	246
EagI	CGGCCG	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	383
EclXI	CGGCCG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	86, 376
Eco52I	CGGCCG	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	446, 645
Eco88I	CYCGRG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	680
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	3 cut(s)	55, 358, 479
FatI	CATG	3 cut(s)	51, 354, 475
FauI	CCCGC	1 cut(s)	599
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	61, 241
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	61, 241
FspBI	CTAG	4 cut(s)	233, 414, 510, 641
GlaI	GCGC	2 cut(s)	560, 567
GluI	GCNGC	2 cut(s)	61, 241
HaeIII	GGCC	4 cut(s)	248, 299, 353, 610
HapII	CCGG	3 cut(s)	249, 255, 504
HhaI	GCGC	2 cut(s)	561, 568
Hin1II	CATG	3 cut(s)	55, 358, 479
Hin6I	GCGC	2 cut(s)	559, 566
HinP1I	GCGC	2 cut(s)	559, 566
HinfI	GANTC	2 cut(s)	218, 316
HpaII	CCGG	3 cut(s)	249, 255, 504
HphI	GGTGA	2 cut(s)	325, 443
Hpy166II	GTNNAC	2 cut(s)	193, 553
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	5 cut(s)	107, 255, 286, 320, 647
Hpy8I	GTNNAC	2 cut(s)	193, 553
HpyAV	CCTTC	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	2 cut(s)	411, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	276, 443, 452, 541, 565
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	55, 358, 479
HspAI	GCGC	2 cut(s)	559, 566
Kpn2I	TCCGGA	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	4 cut(s)	95, 155, 257, 370
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	2 cut(s)	183, 424
MaeI	CTAG	4 cut(s)	233, 414, 510, 641
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	4 cut(s)	132, 313, 465, 519
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	1 cut(s)	638
MhlI	GDGCHC	2 cut(s)	100, 262
MluCI	AATT	3 cut(s)	21, 680, 694
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	9 cut(s)	188, 205, 208, 281, 288, 355, 418, 541, 676
MroI	TCCGGA	1 cut(s)	254
MslI	CAYNNNNRTG	2 cut(s)	455, 579
MspI	CCGG	3 cut(s)	249, 255, 504
Mva1269I	GAATGC	1 cut(s)	232
MwoI	GCNNNNNNNGC	5 cut(s)	276, 443, 452, 541, 565
NdeII	GATC	1 cut(s)	571
NheI	GCTAGC	1 cut(s)	640
NlaIII	CATG	3 cut(s)	55, 358, 479
NlaIV	GGNNCC	4 cut(s)	88, 253, 259, 352
NmuCI	GTSAC	3 cut(s)	313, 465, 519
PaeR7I	CTCGAG	1 cut(s)	318
PaqCI	CACCTGC	1 cut(s)	622
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	62, 242
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PspN4I	GGNNCC	4 cut(s)	88, 253, 259, 352
PspPI	GGNCC	5 cut(s)	86, 297, 351, 376, 608
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	2 cut(s)	455, 579
SatI	GCNGC	2 cut(s)	61, 241
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	5 cut(s)	86, 297, 351, 376, 608
SchI	GAGTC	1 cut(s)	310
SduI	GDGCHC	2 cut(s)	100, 262
SfaNI	GCATC	2 cut(s)	183, 424
Sfr274I	CTCGAG	1 cut(s)	318
SinI	GGWCC	2 cut(s)	86, 376
SlaI	CTCGAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	455, 579
SmlI	CTYRAG	3 cut(s)	105, 179, 318
SmoI	CTYRAG	3 cut(s)	105, 179, 318
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	3 cut(s)	21, 680, 694
SsiI	CCGC	3 cut(s)	240, 368, 606
SspMI	CTAG	4 cut(s)	233, 414, 510, 641
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	4 cut(s)	43, 319, 336, 492
TasI	AATT	3 cut(s)	21, 680, 694
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	3 cut(s)	313, 465, 519
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	3 cut(s)	313, 465, 519
TspDTI	ATGAA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	2 cut(s)	86, 376
XapI	RAATTY	2 cut(s)	680, 694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	552
XspI	CTAG	4 cut(s)	233, 414, 510, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.