RLG00000017348

Respiratory burst oxidase homolog protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
15535670 .. 15539017
3348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017348

Sequence Viewer

Length: 1383 bp
ATGGCCCTCATCCTTTTACTTGTCTGTCGTAACACACTGACATGGCTTCGATCAACACGAGCTAGGTCCTTCATTCCCTTTGATGACAACATTAATTTCCACAAGATGATTGCATTTGCTATAGCAATTGGAATAATTGTTCATGCTGGGAACCATGTGGCATGTGACTTTCCTCGTCTAGTAAACTCATCTGCGGAAGAATTTGAGCCAATATCCTCTGATTTCCATGGCAAAAACCTGACGCTTGACTGGAATTCTGATGGTGATTTTTATGGCCATCTCATTCACGCTAGCAGCGAGTCACTTTCGAAGGAACATGGTGAGGCTTCCTGCCCCTTGAACAAACTGACTGGGTTTAATGCGTTCTGGTATTCTCATCATCTGCTACGTCTGGTCTACGTTTTGCTACTCATCCATGGAAGCTGTTTGTACTTTGTCCACGAGTGGTATCAGAAAACGACATGGATGTACATCTCTGTTCCATTTCTGCTGTATTCAGAGCGCAGTATCCGAACATGTAGATCAAAACACTATTCAGGTAAGATACTAAAGGCTACAATCTTACCCAGAAATGTTATCAGCTTAAACATGTCCAAGCCACCTGGATTTAAGTACAGAAGTGGGCAATGCATATTTCTACAATGCCCAACAATCTCCCCATTTGAATGGCACCCATTTTCCATCACCTCAGCACCTGGGGATGAGCATCTGAGTGTTCATATTCGAACAGTTGGAGACTGGACGCAAGAATTGAACGTTGCTCAGCCACAAGATATGGATCAAATAAGACTATGCAGCCAACCCAAATTCAACTATGATGTCGTACTCCTTGTGGGTCTTGGCATTGGAGCTACCCCTTTTGTAAGCATCCTTAAAGATCTTCTTAACAGCACAAGAACTACTGAAACTAGTACACCATCAGGCAGCCTAAATAGTTTGACACCCAATGACAAGAAGAAATCACAGAGGACTACAAATGCTCATTTCTATTGGGTTACCAGAGAACCTGGCTCTTTTGAGTGGTTTAAAGGAGTCATGGATGAAGTGGCAGAAATGGATCTCAAAGGTCAGATTGAACTTCACATTACGAGTGTCTACAAAGAGGGTGATGCAAGGTCAACTCTAATCACCATGGTCCAAACTCGCAACCATGCCAAACATGGAGTTGACATCCTATCGGGCACCAGAGTAATGACTCATTTTGCAAGACCTAATTGGAAAGAAGTGTTTACCAAGATAGCTTCCAAGCATCCATTTTCGACAGTAGGGGTATTCTCCTGGGGGATGCCTATATTAGCAAAGGAGCTGAAGATGCTATCACTTGAGCTCAGTCACAAGACATCGACACGCTTTGAATTCCACAAGGAGTACTTTAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

461

Amino Acids

52.47

Weight (kDa)

8.86

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_8 PF08022 179 - 252 1.4e-23 FAD-binding domain
NAD_binding_6 PF08030 272 - 439 1.5e-42 Ferric reductase NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 669, 1181
AccI GTMKAC 2 cut(s) 396, 1095
AciI CCGC 1 cut(s) 194
AclI AACGTT 1 cut(s) 756
AclWI GGATC 2 cut(s) 786, 1065
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 4 cut(s) 200, 253, 806, 1355
AcuI CTGAAG 1 cut(s) 1328
AfaI GTAC 6 cut(s) 431, 470, 614, 825, 913, 1370
AflIII ACRYGT 2 cut(s) 515, 588
AgsI TTSAA 6 cut(s) 340, 665, 754, 811, 1076, 1355
AhlI ACTAGT 1 cut(s) 908
AjnI CCWGG 4 cut(s) 601, 694, 1006, 1277
AloI GAACNNNNNNTCC 2 cut(s) 123, 155
AluBI AGCT 7 cut(s) 62, 423, 582, 851, 1241, 1306, 1327
AluI AGCT 7 cut(s) 62, 423, 582, 851, 1241, 1306, 1327
Alw21I GWGCWC 1 cut(s) 1329
Alw26I GTCTC 1 cut(s) 729
AlwI GGATC 2 cut(s) 786, 1065
AlwNI CAGNNNCTG 1 cut(s) 695
AoxI GGCC 2 cut(s) 3, 274
ApeKI GCWGC 3 cut(s) 294, 795, 924
ApoI RAATTY 4 cut(s) 200, 253, 806, 1355
AseI ATTAAT 1 cut(s) 93
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 3 cut(s) 4, 66, 1135
AsuHPI GGTGA 5 cut(s) 275, 332, 676, 1118, 1120
AsuII TTCGAA 2 cut(s) 308, 724
AsuNHI GCTAGC 1 cut(s) 290
AvaII GGWCC 2 cut(s) 66, 1135
BaeGI GKGCMC 1 cut(s) 1184
BalI TGGCCA 1 cut(s) 276
BanI GGYRCC 2 cut(s) 669, 1181
BanII GRGCYC 1 cut(s) 1329
BauI CACGAG 2 cut(s) 57, 440
Bbv12I GWGCWC 1 cut(s) 1329
BbvCI CCTCAGC 1 cut(s) 688
BbvI GCAGC 3 cut(s) 306, 807, 936
BccI CCATC 4 cut(s) 254, 285, 689, 925
BciT130I CCWGG 4 cut(s) 603, 696, 1008, 1279
BciVI GTATCC 1 cut(s) 518
BcoDI GTCTC 1 cut(s) 729
BcuI ACTAGT 1 cut(s) 908
BfaI CTAG 5 cut(s) 63, 179, 291, 909, 1381
BfmI CTRYAG 1 cut(s) 120
BfuI GTATCC 1 cut(s) 518
BglII AGATCT 1 cut(s) 877
BisI GCNGC 3 cut(s) 295, 796, 925
BlpI GCTNAGC 1 cut(s) 762
BlsI GCNGC 3 cut(s) 296, 797, 926
BmcAI AGTACT 1 cut(s) 1370
Bme1390I CCNGG 4 cut(s) 603, 696, 1008, 1279
Bme18I GGWCC 2 cut(s) 66, 1135
BmgT120I GGNCC 3 cut(s) 4, 66, 1135
BmiI GGNNCC 3 cut(s) 152, 671, 1183
BmrFI CCNGG 4 cut(s) 603, 696, 1008, 1279
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 6 cut(s) 715, 876, 1099, 1258, 1275, 1302
BmtI GCTAGC 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 688
Bpu1102I GCTNAGC 1 cut(s) 762
Bpu14I TTCGAA 2 cut(s) 308, 724
BpuEI CTTGAG 1 cut(s) 1343
BsaBI GATNNNNATC 3 cut(s) 470, 705, 777
BsaJI CCNNGG 5 cut(s) 226, 415, 695, 1131, 1278
Bse1I ACTGG 3 cut(s) 254, 355, 743
Bse3DI GCAATG 1 cut(s) 632
Bse8I GATNNNNATC 3 cut(s) 470, 705, 777
BseBI CCWGG 4 cut(s) 603, 696, 1008, 1279
BseDI CCNNGG 5 cut(s) 226, 415, 695, 1131, 1278
BseGI GGATG 9 cut(s) 9, 411, 471, 706, 867, 1045, 1170, 1249, 1290
BseJI GATNNNNATC 3 cut(s) 470, 705, 777
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 4 cut(s) 701, 702, 776, 1342
BseNI ACTGG 3 cut(s) 254, 355, 743
BseSI GKGCMC 1 cut(s) 1184
BseXI GCAGC 3 cut(s) 306, 807, 936
BseYI CCCAGC 1 cut(s) 146
BshFI GGCC 2 cut(s) 5, 276
BshNI GGYRCC 2 cut(s) 669, 1181
BsiHKAI GWGCWC 1 cut(s) 1329
BsmAI GTCTC 1 cut(s) 729
BsnI GGCC 2 cut(s) 5, 276
Bsp119I TTCGAA 2 cut(s) 308, 724
Bsp1286I GDGCHC 2 cut(s) 1184, 1329
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 5 cut(s) 50, 521, 778, 877, 1057
Bsp1720I GCTNAGC 1 cut(s) 762
Bsp19I CCATGG 3 cut(s) 226, 415, 1131
BspACI CCGC 1 cut(s) 194
BspANI GGCC 2 cut(s) 5, 276
BspCNI CTCAG 4 cut(s) 701, 702, 775, 1341
BspLI GGNNCC 3 cut(s) 152, 671, 1183
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 2 cut(s) 786, 1065
BspT104I TTCGAA 2 cut(s) 308, 724
BspT107I GGYRCC 2 cut(s) 669, 1181
BsrDI GCAATG 1 cut(s) 632
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 3 cut(s) 254, 355, 743
BssECI CCNNGG 5 cut(s) 226, 415, 695, 1131, 1278
BssMI GATC 5 cut(s) 50, 521, 778, 877, 1057
BssSI CACGAG 2 cut(s) 57, 440
BssT1I CCWWGG 3 cut(s) 226, 415, 1131
Bst2BI CACGAG 2 cut(s) 57, 440
Bst2UI CCWGG 4 cut(s) 603, 696, 1008, 1279
Bst4CI ACNGT 2 cut(s) 730, 1264
BstAUI TGTACA 1 cut(s) 468
BstBI TTCGAA 2 cut(s) 308, 724
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 4 cut(s) 688, 710, 762, 1328
BstDSI CCRYGG 3 cut(s) 226, 415, 1131
BstEII GGTNACC 1 cut(s) 994
BstF5I GGATG 9 cut(s) 9, 411, 471, 706, 867, 1045, 1170, 1249, 1290
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 5 cut(s) 53, 524, 781, 880, 1060
BstMAI GTCTC 1 cut(s) 729
BstMBI GATC 5 cut(s) 50, 521, 778, 877, 1057
BstMWI GCNNNNNNNGC 1 cut(s) 1312
BstNI CCWGG 4 cut(s) 603, 696, 1008, 1279
BstNSI RCATGY 3 cut(s) 165, 519, 592
BstPI GGTNACC 1 cut(s) 994
BstSCI CCNGG 4 cut(s) 601, 694, 1006, 1277
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 1184
BstV1I GCAGC 3 cut(s) 306, 807, 936
BstX2I RGATCY 2 cut(s) 877, 1057
BstXI CCANNNNNNTGG 1 cut(s) 666
BstYI RGATCY 2 cut(s) 877, 1057
BsuI GTATCC 1 cut(s) 518
BsuRI GGCC 2 cut(s) 5, 276
BtgI CCRYGG 3 cut(s) 226, 415, 1131
BtsCI GGATG 9 cut(s) 9, 411, 471, 706, 867, 1045, 1170, 1249, 1290
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 292
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 1 cut(s) 504
Cfr13I GGNCC 3 cut(s) 4, 66, 1135
CseI GACGC 2 cut(s) 250, 751
Csp6I GTAC 6 cut(s) 430, 469, 613, 824, 912, 1369
CviQI GTAC 6 cut(s) 430, 469, 613, 824, 912, 1369
DdeI CTNAG 4 cut(s) 688, 710, 762, 1328
DpnI GATC 5 cut(s) 52, 523, 780, 879, 1059
DpnII GATC 5 cut(s) 50, 521, 778, 877, 1057
DraI TTTAAA 2 cut(s) 1027, 1375
EaeI YGGCCR 1 cut(s) 274
Ecl136II GAGCTC 1 cut(s) 1327
Eco130I CCWWGG 3 cut(s) 226, 415, 1131
Eco24I GRGCYC 1 cut(s) 1329
Eco47I GGWCC 2 cut(s) 66, 1135
Eco53kI GAGCTC 1 cut(s) 1327
Eco57I CTGAAG 1 cut(s) 1328
Eco91I GGTNACC 1 cut(s) 994
EcoICRI GAGCTC 1 cut(s) 1327
EcoO109I RGGNCCY 1 cut(s) 66
EcoO65I GGTNACC 1 cut(s) 994
EcoRI GAATTC 2 cut(s) 253, 1355
EcoRII CCWGG 4 cut(s) 601, 694, 1006, 1277
EcoT14I CCWWGG 3 cut(s) 226, 415, 1131
EcoT22I ATGCAT 1 cut(s) 632
EcoT38I GRGCYC 1 cut(s) 1329
ErhI CCWWGG 3 cut(s) 226, 415, 1131
FalI AAGNNNNNCTT 3 cut(s) 867, 899, 1355
FblI GTMKAC 2 cut(s) 396, 1095
Fnu4HI GCNGC 3 cut(s) 295, 796, 925
FokI GGATG 8 cut(s) 398, 478, 713, 854, 1052, 1157, 1236, 1297
FriOI GRGCYC 1 cut(s) 1329
Fsp4HI GCNGC 3 cut(s) 295, 796, 925
FspBI CTAG 5 cut(s) 63, 179, 291, 909, 1381
GlaI GCGC 1 cut(s) 503
GluI GCNGC 3 cut(s) 295, 796, 925
GsaI CCCAGC 1 cut(s) 150
HaeIII GGCC 2 cut(s) 5, 276
HgaI GACGC 2 cut(s) 250, 751
HhaI GCGC 1 cut(s) 504
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HincII GTYRAC 2 cut(s) 1119, 1168
HindII GTYRAC 2 cut(s) 1119, 1168
HinfI GANTC 3 cut(s) 299, 1032, 1195
HphI GGTGA 5 cut(s) 275, 332, 676, 1118, 1120
Hpy166II GTNNAC 8 cut(s) 184, 397, 439, 914, 1096, 1119, 1168, 1230
Hpy188I TCNGA 7 cut(s) 220, 259, 453, 499, 512, 711, 1071
Hpy8I GTNNAC 8 cut(s) 184, 397, 439, 914, 1096, 1119, 1168, 1230
HpyAV CCTTC 2 cut(s) 79, 304
HpyCH4III ACNGT 2 cut(s) 730, 1264
HpyCH4IV ACGT 3 cut(s) 388, 399, 756
HpyCH4V TGCA 5 cut(s) 113, 630, 795, 1112, 1205
HpyF10VI GCNNNNNNNGC 1 cut(s) 1312
HpyF3I CTNAG 4 cut(s) 688, 710, 762, 1328
HpySE526I ACGT 3 cut(s) 388, 399, 756
HspAI GCGC 1 cut(s) 502
Kzo9I GATC 5 cut(s) 50, 521, 778, 877, 1057
LmnI GCTCC 2 cut(s) 848, 1303
Lsp1109I GCAGC 3 cut(s) 306, 807, 936
LweI GCATC 6 cut(s) 715, 876, 1099, 1258, 1275, 1302
MaeI CTAG 5 cut(s) 63, 179, 291, 909, 1381
MaeII ACGT 3 cut(s) 388, 399, 756
MaeIII GTNAC 5 cut(s) 29, 164, 300, 994, 1331
MalI GATC 5 cut(s) 52, 523, 780, 879, 1059
MboI GATC 5 cut(s) 50, 521, 778, 877, 1057
MboII GAAGA 4 cut(s) 209, 872, 967, 1321
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 2 cut(s) 877, 1057
MhlI GDGCHC 2 cut(s) 1184, 1329
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 9 cut(s) 94, 126, 135, 200, 253, 749, 806, 1213, 1355
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 3 cut(s) 308, 1041, 1189
MmeI TCCRAC 1 cut(s) 712
MnlI CCTC 7 cut(s) 17, 183, 226, 316, 697, 960, 1096
Mox20I TGGCCA 1 cut(s) 276
Mph1103I ATGCAT 1 cut(s) 632
MscI TGGCCA 1 cut(s) 276
MseI TTAA 8 cut(s) 93, 357, 584, 609, 873, 885, 1026, 1374
MslI CAYNNNNRTG 3 cut(s) 40, 664, 711
Msp20I TGGCCA 1 cut(s) 276
MspR9I CCNGG 4 cut(s) 603, 696, 1008, 1279
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 4 cut(s) 603, 696, 1008, 1279
MwoI GCNNNNNNNGC 1 cut(s) 1312
NcoI CCATGG 3 cut(s) 226, 415, 1131
NdeII GATC 5 cut(s) 50, 521, 778, 877, 1057
NheI GCTAGC 1 cut(s) 290
NlaIV GGNNCC 3 cut(s) 152, 671, 1183
NmuCI GTSAC 3 cut(s) 164, 300, 1331
NsiI ATGCAT 1 cut(s) 632
NspI RCATGY 3 cut(s) 165, 519, 592
NspV TTCGAA 2 cut(s) 308, 724
PciI ACATGT 2 cut(s) 515, 588
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 294
PkrI GCNGC 3 cut(s) 296, 797, 926
PleI GAGTC 3 cut(s) 307, 1040, 1189
PpsI GAGTC 3 cut(s) 307, 1040, 1189
PpuMI RGGWCCY 1 cut(s) 66
PscI ACATGT 2 cut(s) 515, 588
PshBI ATTAAT 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 1329
Psp1406I AACGTT 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 4 cut(s) 601, 694, 1006, 1277
PspEI GGTNACC 1 cut(s) 994
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 4 cut(s) 601, 694, 1006, 1277
PspN4I GGNNCC 3 cut(s) 152, 671, 1183
PspPI GGNCC 3 cut(s) 4, 66, 1135
PspPPI RGGWCCY 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 2 cut(s) 877, 1057
RsaI GTAC 6 cut(s) 431, 470, 614, 825, 913, 1370
RsaNI GTAC 6 cut(s) 430, 469, 613, 824, 912, 1369
RseI CAYNNNNRTG 3 cut(s) 40, 664, 711
SacI GAGCTC 1 cut(s) 1329
SaqAI TTAA 8 cut(s) 93, 357, 584, 609, 873, 885, 1026, 1374
SatI GCNGC 3 cut(s) 295, 796, 925
Sau3AI GATC 5 cut(s) 50, 521, 778, 877, 1057
Sau96I GGNCC 3 cut(s) 4, 66, 1135
ScaI AGTACT 1 cut(s) 1370
SchI GAGTC 3 cut(s) 308, 1041, 1189
ScrFI CCNGG 4 cut(s) 603, 696, 1008, 1279
SduI GDGCHC 2 cut(s) 1184, 1329
SfaNI GCATC 6 cut(s) 715, 876, 1099, 1258, 1275, 1302
SfcI CTRYAG 1 cut(s) 120
SfuI TTCGAA 2 cut(s) 308, 724
SinI GGWCC 2 cut(s) 66, 1135
SmiMI CAYNNNNRTG 3 cut(s) 40, 664, 711
SmlI CTYRAG 1 cut(s) 1322
SmoI CTYRAG 1 cut(s) 1322
SpeI ACTAGT 1 cut(s) 908
Sse9I AATT 9 cut(s) 94, 126, 135, 200, 253, 749, 806, 1213, 1355
SsiI CCGC 1 cut(s) 194
SspMI CTAG 5 cut(s) 63, 179, 291, 909, 1381
SstI GAGCTC 1 cut(s) 1329
StyD4I CCNGG 4 cut(s) 601, 694, 1006, 1277
StyI CCWWGG 3 cut(s) 226, 415, 1131
TaaI ACNGT 2 cut(s) 730, 1264
TaiI ACGT 3 cut(s) 391, 402, 759
TaqI TCGA 5 cut(s) 49, 308, 724, 1259, 1343
TasI AATT 9 cut(s) 94, 126, 135, 200, 253, 749, 806, 1213, 1355
TatI WGTACW 5 cut(s) 429, 468, 612, 911, 1368
Tru1I TTAA 8 cut(s) 93, 357, 584, 609, 873, 885, 1026, 1374
Tru9I TTAA 8 cut(s) 93, 357, 584, 609, 873, 885, 1026, 1374
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 3 cut(s) 164, 300, 1331
TseI GCWGC 3 cut(s) 294, 795, 924
Tsp45I GTSAC 3 cut(s) 164, 300, 1331
TspDTI ATGAA 4 cut(s) 61, 131, 707, 1056
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 66, 1135
VspI ATTAAT 1 cut(s) 93
XapI RAATTY 4 cut(s) 200, 253, 806, 1355
XceI RCATGY 3 cut(s) 165, 519, 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 1157
XmiI GTMKAC 2 cut(s) 396, 1095
XspI CTAG 5 cut(s) 63, 179, 291, 909, 1381
ZrmI AGTACT 1 cut(s) 1370
Zsp2I ATGCAT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.