Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

6657145 .. 6660935

Gene Structure 3791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2607 bp

ATGGCTGAGTGCCCTGGCCATTTTGGGCACCTTGAGCTTGCAAAACCAATGTTTCACATCGGTTTCATGAAGATTGTGTTGTCCGTGATGCGATGCGTTTGCTTCAATTGCTCGAAAATTCTAGTCGATGAGGACGACCACAAGTTTAAGCAAGCTATGAGAATAAAGAATCCGAAAAGCAGGCTGAAAAAAATTTTGGATGCCTGCAAAAACAAAACCAAATGTGAAGGTGGTGACGAAATTGATGTCCAAGGCCAAGATACTGAAGAGCCTGTAAAGAAAAGTCGGGGTGGCTGTGGTGCTCAGCAGCCCAAGCTCTCTATTGAGGGTATGAAAATGAATGCAGAGTACAAAGCCCAAAGGAAGAAAAACGATGACCCGGAACAGCTTCCTGAACCCGTGGAAAGGAAACAGACCCTCACTGCAGAAAGGGTTCTTAGTGTTTTAAAGAGAATAAGTGATGAAGACTCCCAAATATTGGGATTAAACCCAAAGTACGCTCGGCCAGATTGGATGATTCTACAAGTTCTGCCTATTCCTCCACAACCTGTGAGACCCTCTGTTATGATGGACACCTCATCCAGGAGTGAGGATGATTTGACTCATCAATTGGCAATGATAATTCGTCATAATGACAATCTCAGGCGGCAGGAACGAAATGGTTCTCCTGCTCATATCATTTCAGAGTTTGCACAACTTCTGCAATTCCACATTGCCACTTATTTTGACAATGAGTTGCCAGGACTACCAAGGGCTACGCAGAGATCAGGGAGGCCTATTAAATCAATTTGTAGTAGACTGAAGGCAAAGGAAGGGCGTATAAGAGGCAACTTAATGGGGAAACGTGTTGATTTTTCAGCTCGGACAGTGATTACTCCCGATCCAAACATAAACATCGATCAATTAGGAGTGCCGTGGAGTATTGCTTTGAATCTCACATACCCTGAGACTGTGACTCCATATAACATTGAAAGGTTGAAGGAGCTTGTTGAGTATGGCCCCCATCCTCCGCCCGGTAAAACTGGTGCGAAGTATATAATAAGAGATGATGGGCAAAGGCTTGATCTTCGTTATTTGAAGAAAAGCAGTGATCATCATTTGGAGCTTGGATATAAGGTGGAACGTCATTTGAATGATGGAGACTTTGTCCTCTTTAATCGACAACCTAGTCTCCATAAAATGTCTATCATGGGCCACAGAATCAAGATCATGCCATACTCGACATTCCGATTGAATTTGTCTGTGACCTCGCCATATAATGCTGACTTTGACGGGGATGAAATGAATATGCACGTGCCCCAGTCCTTTGAGACCAGGGCCGAAGTTTTGGAGCTCATGATGGTGCCAAAATGCATCGTCTCACCTCAGGCTAATCGACCTGTCATGGGAATTGTGCAGGACACACTTTTAGGTTGTCGTAAGATCACTAAGAGGGACACCTTCATAGAGAAGGATGTTTTCATGAATATCTTGATGTGGTGGGAGGATTTTGATGGAAAGGTTCCTGCTCCTGCGATTTTGAAGCCCCGGCCACTATGGACTGGAAAACAGGTGTTTAATCTTATAATACCAAAACAAATAAATCTCCAAAGAACTTCTGCATGGCACTCAGAATCAGAGAGTGGGAACATAACTCCAGGGGATACTCTTGTTAGAATAGAAAAGGGTGAATTGCTTTCTGGAACTCTCTGCAAGAAGGCCCTTGGAACTTCTACAGGAAGTCTTATCCATGTTATATGGGAAGAGGTTGGTCCAGATGCAGCCCGCAAGTTTCTGGGTCATACCCAATGGCTTGTGAATTACTGGCTGCTGCAGAATGCTTTTAGCATCGGAATTGGAGATACTATTGCTGATGCAGCCACAATGGAGAAAATCAATGAAACAATTTCCAAGGCAAAAAATGAGGTGAAGGATCTTATAAGTAAAGCCCAATCCAAGCAGCTGGAGGCTGAACCTGGACGAACCATGATGGATTCGTTTGAAAACAAAGTGAACCAGGTGTTGAATAGGGCTCGTGATGACGCTGGAAGTAGTGCTCAAAAGAGTTTAGATGAGAGCAACAATCTTAAGGCCATGGTTACAGCAGGGTCCAAAGGGAGTTTTATCAACATATCACAGATGACTGCTTGTGTGGGACAGCAGAATGTTGAGGGTAAGCGAATCCCGTATGGGTTCATAGACCGGACGTTGCCCCACTTTACTAAAGATGATTACGGACCAGAAAGTCGTGGATTTGTAGAAAATTCATATCTGCGTGGACTAACTCCACAGGAATTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATAGATACTGCTGTTAAGACATCTGAGACTGGGTACATCCAAAGGAGACTGGTGAAGGCTATGGAGGATATTATGGTGAAATATGATGGCACAGTACGTAATTCTTTAGGCGATGTCATTCAGTTTCTATATGGGGAAGATGGGATGGATGCTGTTTGGATAGAATCGCAAAAGCTGGATTCTTTGAAAATGAAAAAAACAGAATTTGATAGGACTTTTACTTATGAGTTGGATGATGAAAATTGGAATCCCGACTACATGTTGCATGAACATGTTGAGGATCTCAAAGACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

869

Amino Acids

98.49

Weight (kDa)

7.08

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	2 - 278	2.7e-91	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	280 - 448	3.8e-72	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	451 - 615	5.1e-52	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	641 - 746	1.1e-38	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	753 - 818	4.5e-32	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	PF04992	819 - 868	6.9e-07	RNA polymerase Rpb1, domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1565, 1919
AasI	GACNNNNNNGTC	2 cut(s)	1167, 2223
AccB1I	GGYRCC	2 cut(s)	27, 1342
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	796
AciI	CCGC	3 cut(s)	646, 1010, 1765
AclWI	GGATC	3 cut(s)	875, 1920, 2598
AcoI	YGGCCR	3 cut(s)	16, 503, 1529
AcsI	RAATTY	6 cut(s)	117, 192, 1234, 2242, 2273, 2513
AcuI	CTGAAG	2 cut(s)	285, 821
AcvI	CACGTG	1 cut(s)	1294
AfaI	GTAC	4 cut(s)	350, 497, 2345, 2406
AfiI	CCNNNNNNNGG	5 cut(s)	405, 478, 582, 1013, 1385
AflII	CTTAAG	1 cut(s)	2066
AflIII	ACRYGT	3 cut(s)	844, 2568, 2581
AjnI	CCWGG	7 cut(s)	13, 581, 739, 1313, 1636, 1954, 1995
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
Alw21I	GWGCWC	3 cut(s)	304, 1335, 2038
Alw26I	GTCTC	8 cut(s)	547, 941, 1134, 1175, 1304, 1363, 2330, 2350
AlwI	GGATC	3 cut(s)	875, 1920, 2598
ApeKI	GCWGC	6 cut(s)	307, 1760, 1807, 1810, 1856, 1939
ApoI	RAATTY	6 cut(s)	117, 192, 1234, 2242, 2273, 2513
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	3 cut(s)	387, 432, 661
AspS9I	GGNCC	7 cut(s)	998, 1192, 1317, 1699, 1751, 2088, 2216
AsuC2I	CCSGG	3 cut(s)	380, 1014, 1528
AsuHPI	GGTGA	6 cut(s)	245, 1353, 1679, 1918, 2374, 2398
AvaII	GGWCC	3 cut(s)	1751, 2088, 2216
AxyI	CCTNAGG	1 cut(s)	1365
BaeGI	GKGCMC	3 cut(s)	14, 30, 1299
BaeI	ACNNNNGTAYC	4 cut(s)	1635, 1668, 2307, 2340
BalI	TGGCCA	1 cut(s)	18
BanI	GGYRCC	2 cut(s)	27, 1342
BanII	GRGCYC	2 cut(s)	1335, 2014
BauI	CACGAG	1 cut(s)	2013
BbrPI	CACGTG	1 cut(s)	1294
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	3 cut(s)	304, 1335, 2038
BbvI	GCAGC	6 cut(s)	319, 1772, 1794, 1797, 1868, 1951
BceAI	ACGGC	1 cut(s)	898
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BciT130I	CCWGG	7 cut(s)	15, 583, 741, 1315, 1638, 1956, 1997
BciVI	GTATCC	1 cut(s)	1636
BclI	TGATCA	1 cut(s)	1090
BcnI	CCSGG	3 cut(s)	380, 1014, 1528
BcoDI	GTCTC	8 cut(s)	547, 941, 1134, 1175, 1304, 1363, 2330, 2350
BfaI	CTAG	2 cut(s)	122, 1167
BfmI	CTRYAG	3 cut(s)	423, 1713, 1811
BfrI	CTTAAG	1 cut(s)	2066
BfuI	GTATCC	1 cut(s)	1636
BisI	GCNGC	7 cut(s)	308, 647, 1761, 1808, 1811, 1857, 1940
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	7 cut(s)	309, 648, 1762, 1809, 1812, 1858, 1941
Bme18I	GGWCC	3 cut(s)	1751, 2088, 2216
BmgT120I	GGNCC	7 cut(s)	998, 1192, 1317, 1699, 1751, 2088, 2216
BmiI	GGNNCC	5 cut(s)	29, 1000, 1344, 1503, 2089
BmrI	ACTGGG	2 cut(s)	1294, 2349
BmsI	GCATC	8 cut(s)	78, 83, 190, 1362, 1747, 1836, 1843, 2449
BmuI	ACTGGG	2 cut(s)	1294, 2349
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	2 cut(s)	1620, 1964
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	3 cut(s)	380, 1014, 1528
Bsa29I	ATCGAT	1 cut(s)	897
BsaAI	YACGTR	2 cut(s)	1294, 2408
BsaI	GGTCTC	2 cut(s)	547, 1304
BsaWI	WCCGGW	1 cut(s)	2181
BsaXI	ACNNNNNCTCC	6 cut(s)	940, 970, 1131, 1155, 1161, 1185
Bsc4I	CCNNNNNNNGG	5 cut(s)	405, 478, 582, 1013, 1385
Bse1I	ACTGG	6 cut(s)	1027, 1300, 1546, 1808, 2344, 2364
Bse21I	CCTNAGG	1 cut(s)	1365
Bse3DI	GCAATG	2 cut(s)	621, 711
BseBI	CCWGG	7 cut(s)	15, 583, 741, 1315, 1638, 1956, 1997
BseCI	ATCGAT	1 cut(s)	897
BseLI	CCNNNNNNNGG	5 cut(s)	405, 478, 582, 1013, 1385
BseMI	GCAATG	2 cut(s)	621, 711
BseMII	CTCAG	6 cut(s)	317, 655, 936, 1379, 1623, 2325
BseNI	ACTGG	6 cut(s)	1027, 1300, 1546, 1808, 2344, 2364
BseSI	GKGCMC	3 cut(s)	14, 30, 1299
BseXI	GCAGC	6 cut(s)	319, 1772, 1794, 1797, 1868, 1951
BsgI	GTGCAG	1 cut(s)	1415
BshNI	GGYRCC	2 cut(s)	27, 1342
BshVI	ATCGAT	1 cut(s)	897
BsiHKAI	GWGCWC	3 cut(s)	304, 1335, 2038
BsiSI	CCGG	4 cut(s)	380, 1014, 1528, 2182
BslFI	GGGAC	2 cut(s)	1448, 2148
BslI	CCNNNNNNNGG	5 cut(s)	405, 478, 582, 1013, 1385
BsmAI	GTCTC	8 cut(s)	547, 941, 1134, 1175, 1304, 1363, 2330, 2350
BsmBI	CGTCTC	1 cut(s)	1363
BsmFI	GGGAC	2 cut(s)	1448, 2148
BsmI	GAATGC	2 cut(s)	346, 1822
Bso31I	GGTCTC	2 cut(s)	547, 1304
Bsp1286I	GDGCHC	7 cut(s)	14, 30, 304, 1299, 1335, 2014, 2038
Bsp143I	GATC	9 cut(s)	764, 880, 898, 1063, 1090, 1206, 1422, 1912, 2590
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	2073
BspACI	CCGC	3 cut(s)	646, 1010, 1765
BspCNI	CTCAG	6 cut(s)	316, 654, 937, 1378, 1622, 2326
BspDI	ATCGAT	1 cut(s)	897
BspHI	TCATGA	3 cut(s)	66, 1335, 1461
BspLI	GGNNCC	5 cut(s)	29, 1000, 1344, 1503, 2089
BspMAI	CTGCAG	2 cut(s)	427, 1815
BspPI	GGATC	3 cut(s)	875, 1920, 2598
BspQI	GCTCTTC	1 cut(s)	261
BspT107I	GGYRCC	2 cut(s)	27, 1342
BspTI	CTTAAG	1 cut(s)	2066
BspTNI	GGTCTC	2 cut(s)	547, 1304
BsrDI	GCAATG	2 cut(s)	621, 711
BsrI	ACTGG	6 cut(s)	1027, 1300, 1546, 1808, 2344, 2364
BssMI	GATC	9 cut(s)	764, 880, 898, 1063, 1090, 1206, 1422, 1912, 2590
BssSI	CACGAG	1 cut(s)	2013
BssT1I	CCWWGG	5 cut(s)	250, 749, 1702, 1890, 2073
Bst2BI	CACGAG	1 cut(s)	2013
Bst2UI	CCWGG	7 cut(s)	15, 583, 741, 1315, 1638, 1956, 1997
Bst4CI	ACNGT	3 cut(s)	868, 952, 2404
Bst6I	CTCTTC	2 cut(s)	261, 1737
BstAFI	CTTAAG	1 cut(s)	2066
BstBAI	YACGTR	2 cut(s)	1294, 2408
BstC8I	GCNNGC	5 cut(s)	39, 153, 182, 205, 1765
BstDEI	CTNAG	9 cut(s)	6, 303, 437, 641, 945, 1365, 1428, 1609, 2334
BstDSI	CCRYGG	3 cut(s)	399, 914, 2073
BstENI	CCTNNNNNAGG	1 cut(s)	580
BstKTI	GATC	9 cut(s)	767, 883, 901, 1066, 1093, 1209, 1425, 1915, 2593
BstMAI	GTCTC	8 cut(s)	547, 941, 1134, 1175, 1304, 1363, 2330, 2350
BstMBI	GATC	9 cut(s)	764, 880, 898, 1063, 1090, 1206, 1422, 1912, 2590
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 108, 313, 1856
BstNI	CCWGG	7 cut(s)	15, 583, 741, 1315, 1638, 1956, 1997
BstNSI	RCATGY	2 cut(s)	2572, 2585
BstSFI	CTRYAG	3 cut(s)	423, 1713, 1811
BstSLI	GKGCMC	3 cut(s)	14, 30, 1299
BstSNI	TACGTA	1 cut(s)	2408
BstV1I	GCAGC	6 cut(s)	319, 1772, 1794, 1797, 1868, 1951
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	2 cut(s)	1912, 2590
BstXI	CCANNNNNNTGG	1 cut(s)	1942
BstYI	RGATCY	2 cut(s)	1912, 2590
Bsu15I	ATCGAT	1 cut(s)	897
Bsu36I	CCTNAGG	1 cut(s)	1365
BsuI	GTATCC	1 cut(s)	1636
BsuTUI	ATCGAT	1 cut(s)	897
BtgI	CCRYGG	3 cut(s)	399, 914, 2073
BtgZI	GCGATG	2 cut(s)	106, 2436
BtsI	GCAGTG	2 cut(s)	420, 1093
BtsIMutI	CAGTG	3 cut(s)	420, 873, 1093
Cac8I	GCNNGC	5 cut(s)	39, 153, 182, 205, 1765
CciI	TCATGA	3 cut(s)	66, 1335, 1461
Cfr13I	GGNCC	7 cut(s)	998, 1192, 1317, 1699, 1751, 2088, 2216
ClaI	ATCGAT	1 cut(s)	897
CseI	GACGC	1 cut(s)	2030
CsiI	ACCWGGT	1 cut(s)	1995
Csp6I	GTAC	4 cut(s)	349, 496, 2344, 2405
CspCI	CAANNNNNGTGG	2 cut(s)	706, 741
CviQI	GTAC	4 cut(s)	349, 496, 2344, 2405
DdeI	CTNAG	9 cut(s)	6, 303, 437, 641, 945, 1365, 1428, 1609, 2334
DpnI	GATC	9 cut(s)	766, 882, 900, 1065, 1092, 1208, 1424, 1914, 2592
DpnII	GATC	9 cut(s)	764, 880, 898, 1063, 1090, 1206, 1422, 1912, 2590
DraI	TTTAAA	1 cut(s)	447
DrdI	GACNNNNNNGTC	2 cut(s)	1167, 2223
DseDI	GACNNNNNNGTC	2 cut(s)	1167, 2223
EaeI	YGGCCR	3 cut(s)	16, 503, 1529
Eam1104I	CTCTTC	2 cut(s)	261, 1737
EarI	CTCTTC	2 cut(s)	261, 1737
EciI	GGCGGA	1 cut(s)	999
Ecl136II	GAGCTC	1 cut(s)	1333
Eco105I	TACGTA	1 cut(s)	2408
Eco130I	CCWWGG	5 cut(s)	250, 749, 1702, 1890, 2073
Eco147I	AGGCCT	1 cut(s)	775
Eco24I	GRGCYC	2 cut(s)	1335, 2014
Eco31I	GGTCTC	2 cut(s)	547, 1304
Eco47I	GGWCC	3 cut(s)	1751, 2088, 2216
Eco53kI	GAGCTC	1 cut(s)	1333
Eco57I	CTGAAG	2 cut(s)	285, 821
Eco72I	CACGTG	1 cut(s)	1294
Eco81I	CCTNAGG	1 cut(s)	1365
EcoICRI	GAGCTC	1 cut(s)	1333
EcoNI	CCTNNNNNAGG	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	1699
EcoRI	GAATTC	1 cut(s)	2273
EcoRII	CCWGG	7 cut(s)	13, 581, 739, 1313, 1636, 1954, 1995
EcoT14I	CCWWGG	5 cut(s)	250, 749, 1702, 1890, 2073
EcoT22I	ATGCAT	1 cut(s)	1355
EcoT38I	GRGCYC	2 cut(s)	1335, 2014
ErhI	CCWWGG	5 cut(s)	250, 749, 1702, 1890, 2073
Esp3I	CGTCTC	1 cut(s)	1363
FaqI	GGGAC	2 cut(s)	1448, 2148
FauI	CCCGC	1 cut(s)	1772
FbaI	TGATCA	1 cut(s)	1090
FblI	GTMKAC	1 cut(s)	796
Fnu4HI	GCNGC	7 cut(s)	308, 647, 1761, 1808, 1811, 1857, 1940
FriOI	GRGCYC	2 cut(s)	1335, 2014
Fsp4HI	GCNGC	7 cut(s)	308, 647, 1761, 1808, 1811, 1857, 1940
FspBI	CTAG	2 cut(s)	122, 1167
GluI	GCNGC	7 cut(s)	308, 647, 1761, 1808, 1811, 1857, 1940
GsuI	CTGGAG	2 cut(s)	1620, 1964
HapII	CCGG	4 cut(s)	380, 1014, 1528, 2182
HgaI	GACGC	1 cut(s)	2030
HpaII	CCGG	4 cut(s)	380, 1014, 1528, 2182
HphI	GGTGA	6 cut(s)	245, 1353, 1679, 1918, 2374, 2398
Hpy166II	GTNNAC	3 cut(s)	797, 1993, 2258
Hpy188I	TCNGA	8 cut(s)	174, 685, 864, 1229, 1612, 1618, 1832, 2335
Hpy8I	GTNNAC	3 cut(s)	797, 1993, 2258
HpyCH4III	ACNGT	3 cut(s)	868, 952, 2404
HpyCH4IV	ACGT	5 cut(s)	844, 1123, 1293, 2186, 2407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 108, 313, 1856
HpyF3I	CTNAG	9 cut(s)	6, 303, 437, 641, 945, 1365, 1428, 1609, 2334
HpySE526I	ACGT	5 cut(s)	844, 1123, 1293, 2186, 2407
Ksp22I	TGATCA	1 cut(s)	1090
Kzo9I	GATC	9 cut(s)	764, 880, 898, 1063, 1090, 1206, 1422, 1912, 2590
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	4 cut(s)	982, 1102, 1330, 1513
Lsp1109I	GCAGC	6 cut(s)	319, 1772, 1794, 1797, 1868, 1951
LweI	GCATC	8 cut(s)	78, 83, 190, 1362, 1747, 1836, 1843, 2449
MabI	ACCWGGT	1 cut(s)	1995
MaeI	CTAG	2 cut(s)	122, 1167
MaeII	ACGT	5 cut(s)	844, 1123, 1293, 2186, 2407
MaeIII	GTNAC	4 cut(s)	233, 952, 1243, 2077
MalI	GATC	9 cut(s)	766, 882, 900, 1065, 1092, 1208, 1424, 1914, 2592
MboI	GATC	9 cut(s)	764, 880, 898, 1063, 1090, 1206, 1422, 1912, 2590
MboII	GAAGA	8 cut(s)	82, 278, 376, 476, 1058, 1090, 1754, 2459
MfeI	CAATTG	2 cut(s)	106, 608
MflI	RGATCY	2 cut(s)	1912, 2590
MhlI	GDGCHC	7 cut(s)	14, 30, 304, 1299, 1335, 2014, 2038
MlsI	TGGCCA	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	18
MlyI	GAGTC	3 cut(s)	461, 595, 949
MmeI	TCCRAC	1 cut(s)	2520
Mox20I	TGGCCA	1 cut(s)	18
Mph1103I	ATGCAT	1 cut(s)	1355
MroXI	GAANNNNTTC	3 cut(s)	387, 432, 661
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	9 cut(s)	147, 446, 485, 780, 833, 1155, 1557, 2067, 2325
MslI	CAYNNNNRTG	3 cut(s)	1131, 1340, 2580
Msp20I	TGGCCA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	1942
MspCI	CTTAAG	1 cut(s)	2066
MspI	CCGG	4 cut(s)	380, 1014, 1528, 2182
MunI	CAATTG	2 cut(s)	106, 608
Mva1269I	GAATGC	2 cut(s)	346, 1822
MvaI	CCWGG	7 cut(s)	15, 583, 741, 1315, 1638, 1956, 1997
MwoI	GCNNNNNNNGC	4 cut(s)	34, 108, 313, 1856
NciI	CCSGG	3 cut(s)	380, 1014, 1528
NcoI	CCATGG	1 cut(s)	2073
NdeII	GATC	9 cut(s)	764, 880, 898, 1063, 1090, 1206, 1422, 1912, 2590
NlaIV	GGNNCC	5 cut(s)	29, 1000, 1344, 1503, 2089
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	3 cut(s)	233, 952, 1243
NsiI	ATGCAT	1 cut(s)	1355
NspI	RCATGY	2 cut(s)	2572, 2585
PagI	TCATGA	3 cut(s)	66, 1335, 1461
PceI	AGGCCT	1 cut(s)	775
PciI	ACATGT	2 cut(s)	2568, 2581
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	2 cut(s)	346, 1822
PdmI	GAANNNNTTC	3 cut(s)	387, 432, 661
PflFI	GACNNNGTC	1 cut(s)	1145
PflMI	CCANNNNNTGG	1 cut(s)	478
PfoI	TCCNGGA	1 cut(s)	581
PkrI	GCNGC	7 cut(s)	309, 648, 1762, 1809, 1812, 1858, 1941
PleI	GAGTC	3 cut(s)	461, 595, 949
PmaCI	CACGTG	1 cut(s)	1294
PmlI	CACGTG	1 cut(s)	1294
PpsI	GAGTC	3 cut(s)	461, 595, 949
Ppu21I	YACGTR	2 cut(s)	1294, 2408
PscI	ACATGT	2 cut(s)	2568, 2581
PsiI	TTATAA	2 cut(s)	1565, 1919
Psp124BI	GAGCTC	1 cut(s)	1335
Psp6I	CCWGG	7 cut(s)	13, 581, 739, 1313, 1636, 1954, 1995
PspCI	CACGTG	1 cut(s)	1294
PspGI	CCWGG	7 cut(s)	13, 581, 739, 1313, 1636, 1954, 1995
PspN4I	GGNNCC	5 cut(s)	29, 1000, 1344, 1503, 2089
PspPI	GGNCC	7 cut(s)	998, 1192, 1317, 1699, 1751, 2088, 2216
PstI	CTGCAG	2 cut(s)	427, 1815
PsuI	RGATCY	2 cut(s)	1912, 2590
PsyI	GACNNNGTC	1 cut(s)	1145
PvuII	CAGCTG	1 cut(s)	1942
RsaI	GTAC	4 cut(s)	350, 497, 2345, 2406
RsaNI	GTAC	4 cut(s)	349, 496, 2344, 2405
RseI	CAYNNNNRTG	3 cut(s)	1131, 1340, 2580
SacI	GAGCTC	1 cut(s)	1335
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	9 cut(s)	147, 446, 485, 780, 833, 1155, 1557, 2067, 2325
SatI	GCNGC	7 cut(s)	308, 647, 1761, 1808, 1811, 1857, 1940
Sau3AI	GATC	9 cut(s)	764, 880, 898, 1063, 1090, 1206, 1422, 1912, 2590
Sau96I	GGNCC	7 cut(s)	998, 1192, 1317, 1699, 1751, 2088, 2216
SchI	GAGTC	3 cut(s)	461, 595, 949
SduI	GDGCHC	7 cut(s)	14, 30, 304, 1299, 1335, 2014, 2038
SexAI	ACCWGGT	1 cut(s)	1995
SfaNI	GCATC	8 cut(s)	78, 83, 190, 1362, 1747, 1836, 1843, 2449
SfcI	CTRYAG	3 cut(s)	423, 1713, 1811
SinI	GGWCC	3 cut(s)	1751, 2088, 2216
SmiMI	CAYNNNNRTG	3 cut(s)	1131, 1340, 2580
SmlI	CTYRAG	2 cut(s)	32, 2066
SmoI	CTYRAG	2 cut(s)	32, 2066
SnaBI	TACGTA	1 cut(s)	2408
SseBI	AGGCCT	1 cut(s)	775
SsiI	CCGC	3 cut(s)	646, 1010, 1765
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	2 cut(s)	122, 1167
SstI	GAGCTC	1 cut(s)	1335
StuI	AGGCCT	1 cut(s)	775
StyI	CCWWGG	5 cut(s)	250, 749, 1702, 1890, 2073
TaaI	ACNGT	3 cut(s)	868, 952, 2404
TaiI	ACGT	5 cut(s)	847, 1126, 1296, 2189, 2410
TaqI	TCGA	6 cut(s)	113, 126, 897, 1159, 1220, 1375
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	649
Tru1I	TTAA	9 cut(s)	147, 446, 485, 780, 833, 1155, 1557, 2067, 2325
Tru9I	TTAA	9 cut(s)	147, 446, 485, 780, 833, 1155, 1557, 2067, 2325
TscAI	CASTG	3 cut(s)	427, 873, 1093
TseFI	GTSAC	3 cut(s)	233, 952, 1243
TseI	GCWGC	6 cut(s)	307, 1760, 1807, 1810, 1856, 1939
Tsp45I	GTSAC	3 cut(s)	233, 952, 1243
TspGWI	ACGGA	2 cut(s)	73, 2229
TspRI	CASTG	3 cut(s)	427, 873, 1093
Tth111I	GACNNNGTC	1 cut(s)	1145
Van91I	CCANNNNNTGG	1 cut(s)	478
Vha464I	CTTAAG	1 cut(s)	2066
VpaK11BI	GGWCC	3 cut(s)	1751, 2088, 2216
XagI	CCTNNNNNAGG	1 cut(s)	580
XapI	RAATTY	6 cut(s)	117, 192, 1234, 2242, 2273, 2513
XceI	RCATGY	2 cut(s)	2572, 2585
XmiI	GTMKAC	1 cut(s)	796
XmnI	GAANNNNTTC	3 cut(s)	387, 432, 661
XspI	CTAG	2 cut(s)	122, 1167
Zsp2I	ATGCAT	1 cut(s)	1355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.