pycom02g11770

Membrane protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0003343
Physical Location & Seq
Reverse (-)
8339091 .. 8342118
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11770.5

Sequence Viewer

Length: 1377 bp
ATGGCTCGAAACATGTTCACTCAGAGGGCAGTAAAAATGTCAGCAGGAGCAGCAGCATTAGCAATAGCATGGGCAGTATTCACTGAAGTTGCCAGTGCAGAAAGGCCTCTGAAAGACGAGATTATCAAGGCGGAAATTTTTGTTGAGCAAGAACCAATTTTTGCGAGAGTGATTAATTTTCTATGGCAGGCTGGAGGTTCTTCTTATCAGCCTGTTTGGCCTGAGATGAAGTTTGGTTGGAAAATTGTAGTAGGTTCAGTAGTTGGATTCTTTGGTGCTGCATTGGGTAGTGTTGGCGGTGTTGGTGGTGGAGGAATTTTTGTTCCAATGCTCGCCTTGATCGATCGCTTCGATCCCAAGTCTTCCACCGCGATTTCCAAGTGTATGATAATGGGGGCTGCAGGATCAACAGTATACTTCAATTTGAGGCTTAGGCACCCAACATTGGACATGCCCCTCATAGATTATGATCTGGCGTTGCTCTTTCAGCCCATGCTCATGCTAGGGATCAGCATCGGAGTTGCCTTCAACGTCGTGTTTGCCGATTGGATGGTCACAGTTCTACTTATCATCCTCTTCTTAGGTACAGCAGCAAAAGCTTTGATGAAAGGCGTGGAAACATGGAAGAAGGAAACAATGATGAAGAAGGAAGCAGAAAATATGTTAGAATCAGAGACCAAACAGGATGAGGGTTCTGGGGAAGACTACAAACCGCTACCTAGTGGTCCAGCTTCATCGCAAGATGAGGAGGTACCAATAACGCGAAACATTTACTGGAAAGAGTTATCGTTGCTCATGTATGTCTGGGTGGCTTTTCTTATTGTCCAGATTGTTAAGGTACCAATTGCACTTTCCGTAACGCTCTTCGAAGCCATATGCTTACGCAAAGGCACCAGAGTGATTGCATCAAAAGGAAAGGAAATCACAAACTGGAAGTTGCATCAGATTTTTCTCTACTGCAGCTGTGGAATTGTAGCTGGTATGGTCGGTGGACTACTTGGCTTGGGAGGCGGTTTCATCTTGGGACCCCTTTTTCTTGAATTGGGAATTCCTCCTCAGGTAGCAAGTGCTACATCCACCTTTGCAATGCTATTCTCATCCTCCATGTCAGTTGTTCAGTATTACCTTCTCAACCGTTTCCCGGTCCCCTATGCTGCTTATTTCGTCTTGGTTGCAACAATTGCTGCATTTACTGGTCAGCATGTAGTGAGAAAGATCATTGCAGTCCTTGGGAGAGCATCCATCGTCATCTTCATTCTAGCTTTGACAATCTTCGTTAGCGCAATCAGCTTAGGCGGGGTGGGCATAGCAAACATGGTTGAGAAGATGGAGAATCAAGAGTACATGGGATTTGAAAATTTCTGTATCCCGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

459

Amino Acids

49.86

Weight (kDa)

7.57

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 751, 838
AccB1I GGYRCC 4 cut(s) 435, 751, 838, 890
AccI GTMKAC 1 cut(s) 414
AccII CGCG 2 cut(s) 371, 763
AciI CCGC 6 cut(s) 131, 297, 369, 713, 1011, 1296
AclWI GGATC 3 cut(s) 347, 412, 515
AcsI RAATTY 4 cut(s) 135, 315, 1047, 1357
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 4 cut(s) 586, 753, 840, 1343
AfiI CCNNNNNNNGG 2 cut(s) 445, 1141
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 4 cut(s) 421, 529, 1040, 1355
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AleI CACNNNNGTG 1 cut(s) 896
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 6 cut(s) 599, 731, 963, 977, 1262, 1290
AluI AGCT 6 cut(s) 599, 731, 963, 977, 1262, 1290
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 3 cut(s) 347, 412, 515
AoxI GGCC 2 cut(s) 104, 218
ApeKI GCWGC 8 cut(s) 50, 53, 278, 398, 590, 960, 1154, 1184
ApoI RAATTY 4 cut(s) 135, 315, 1047, 1357
AseI ATTAAT 1 cut(s) 174
Asp718I GGTACC 2 cut(s) 751, 838
AspLEI GCGC 1 cut(s) 1283
AspS9I GGNCC 3 cut(s) 725, 1025, 1144
AsuC2I CCSGG 1 cut(s) 1142
AsuII TTCGAA 1 cut(s) 867
AvaII GGWCC 3 cut(s) 725, 1025, 1144
AxyI CCTNAGG 1 cut(s) 1056
BanI GGYRCC 4 cut(s) 435, 751, 838, 890
BbsI GAAGAC 2 cut(s) 354, 708
BbvI GCAGC 8 cut(s) 62, 65, 265, 385, 602, 972, 1141, 1171
BccI CCATC 3 cut(s) 544, 1250, 1321
BciVI GTATCC 1 cut(s) 1376
BcnI CCSGG 1 cut(s) 1142
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 3 cut(s) 503, 720, 1259
BfmI CTRYAG 2 cut(s) 399, 958
BfuI GTATCC 1 cut(s) 1376
BglI GCCNNNNNGGC 1 cut(s) 217
BisI GCNGC 8 cut(s) 51, 54, 279, 399, 591, 961, 1155, 1185
BlsI GCNGC 8 cut(s) 52, 55, 280, 400, 592, 962, 1156, 1186
Bme1390I CCNGG 1 cut(s) 1142
Bme18I GGWCC 3 cut(s) 725, 1025, 1144
BmgT120I GGNCC 3 cut(s) 725, 1025, 1144
BmiI GGNNCC 7 cut(s) 437, 753, 840, 892, 1026, 1027, 1146
BmrFI CCNGG 1 cut(s) 1142
BmsI GCATC 4 cut(s) 522, 914, 949, 1247
BpiI GAAGAC 2 cut(s) 354, 708
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 2 cut(s) 431, 1291
Bpu14I TTCGAA 1 cut(s) 867
BpuMI CCSGG 1 cut(s) 1142
Bsa29I ATCGAT 1 cut(s) 342
BsaBI GATNNNNATC 2 cut(s) 468, 512
BsaI GGTCTC 1 cut(s) 668
BsaJI CCNNGG 1 cut(s) 1228
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 1141
Bse1I ACTGG 4 cut(s) 93, 779, 935, 1198
Bse21I CCTNAGG 1 cut(s) 1056
Bse3DI GCAATG 2 cut(s) 1092, 1218
Bse8I GATNNNNATC 2 cut(s) 468, 512
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 1228
BseGI GGATG 6 cut(s) 555, 570, 691, 1073, 1097, 1238
BseJI GATNNNNATC 2 cut(s) 468, 512
BseLI CCNNNNNNNGG 2 cut(s) 445, 1141
BseMI GCAATG 2 cut(s) 1092, 1218
BseMII CTCAG 3 cut(s) 35, 213, 1070
BseNI ACTGG 4 cut(s) 93, 779, 935, 1198
BseRI GAGGAG 2 cut(s) 761, 1044
BseXI GCAGC 8 cut(s) 62, 65, 265, 385, 602, 972, 1141, 1171
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 371, 763
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 106, 220
BshNI GGYRCC 4 cut(s) 435, 751, 838, 890
BshVI ATCGAT 1 cut(s) 342
BsiEI CGRYCG 1 cut(s) 346
BsiSI CCGG 1 cut(s) 1142
BslFI GGGAC 2 cut(s) 1038, 1130
BslI CCNNNNNNNGG 2 cut(s) 445, 1141
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 2 cut(s) 1038, 1130
BsnI GGCC 2 cut(s) 106, 220
Bso31I GGTCTC 1 cut(s) 668
Bsp119I TTCGAA 1 cut(s) 867
Bsp143I GATC 7 cut(s) 339, 343, 352, 404, 469, 507, 1215
BspACI CCGC 6 cut(s) 131, 297, 369, 713, 1011, 1296
BspANI GGCC 2 cut(s) 106, 220
BspCNI CTCAG 3 cut(s) 34, 214, 1069
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 2 cut(s) 371, 763
BspLI GGNNCC 7 cut(s) 437, 753, 840, 892, 1026, 1027, 1146
BspMAI CTGCAG 2 cut(s) 403, 962
BspPI GGATC 3 cut(s) 347, 412, 515
BspQI GCTCTTC 1 cut(s) 869
BspT104I TTCGAA 1 cut(s) 867
BspT107I GGYRCC 4 cut(s) 435, 751, 838, 890
BspTNI GGTCTC 1 cut(s) 668
BsrDI GCAATG 2 cut(s) 1092, 1218
BsrI ACTGG 4 cut(s) 93, 779, 935, 1198
BssECI CCNNGG 1 cut(s) 1228
BssMI GATC 7 cut(s) 339, 343, 352, 404, 469, 507, 1215
BssNAI GTATAC 1 cut(s) 415
BssT1I CCWWGG 1 cut(s) 1228
Bst1107I GTATAC 1 cut(s) 415
Bst4CI ACNGT 3 cut(s) 412, 559, 1136
Bst6I CTCTTC 2 cut(s) 581, 869
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstBI TTCGAA 1 cut(s) 867
BstC8I GCNNGC 2 cut(s) 189, 333
BstDEI CTNAG 6 cut(s) 21, 222, 431, 580, 1056, 1291
BstF5I GGATG 6 cut(s) 555, 570, 691, 1073, 1097, 1238
BstFNI CGCG 2 cut(s) 371, 763
BstHHI GCGC 1 cut(s) 1283
BstKTI GATC 7 cut(s) 342, 346, 355, 407, 472, 510, 1218
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 7 cut(s) 339, 343, 352, 404, 469, 507, 1215
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 9 cut(s) 50, 59, 217, 487, 596, 1008, 1181, 1287, 1302
BstNSI RCATGY 3 cut(s) 16, 454, 1205
BstSCI CCNGG 1 cut(s) 1140
BstSFI CTRYAG 2 cut(s) 399, 958
BstUI CGCG 2 cut(s) 371, 763
BstV1I GCAGC 8 cut(s) 62, 65, 265, 385, 602, 972, 1141, 1171
BstV2I GAAGAC 2 cut(s) 354, 708
BstZ17I GTATAC 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 342
Bsu36I CCTNAGG 1 cut(s) 1056
BsuI GTATCC 1 cut(s) 1376
BsuRI GGCC 2 cut(s) 106, 220
BsuTUI ATCGAT 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 720
BtsCI GGATG 6 cut(s) 555, 570, 691, 1073, 1097, 1238
BtsIMutI CAGTG 2 cut(s) 81, 100
Cac8I GCNNGC 2 cut(s) 189, 333
CfoI GCGC 1 cut(s) 1283
Cfr13I GGNCC 3 cut(s) 725, 1025, 1144
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 4 cut(s) 585, 752, 839, 1342
CviQI GTAC 4 cut(s) 585, 752, 839, 1342
DdeI CTNAG 6 cut(s) 21, 222, 431, 580, 1056, 1291
DpnI GATC 7 cut(s) 341, 345, 354, 406, 471, 509, 1217
DpnII GATC 7 cut(s) 339, 343, 352, 404, 469, 507, 1215
Eam1104I CTCTTC 2 cut(s) 581, 869
EarI CTCTTC 2 cut(s) 581, 869
EciI GGCGGA 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 1228
Eco147I AGGCCT 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 668
Eco47I GGWCC 3 cut(s) 725, 1025, 1144
Eco57I CTGAAG 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 1056
EcoO109I RGGNCCY 1 cut(s) 1025
EcoRI GAATTC 1 cut(s) 1047
EcoT14I CCWWGG 1 cut(s) 1228
ErhI CCWWGG 1 cut(s) 1228
FaqI GGGAC 2 cut(s) 1038, 1130
FauI CCCGC 1 cut(s) 1289
FauNDI CATATG 1 cut(s) 875
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 8 cut(s) 51, 54, 279, 399, 591, 961, 1155, 1185
FokI GGATG 6 cut(s) 557, 562, 698, 1060, 1084, 1225
Fsp4HI GCNGC 8 cut(s) 51, 54, 279, 399, 591, 961, 1155, 1185
FspBI CTAG 3 cut(s) 503, 720, 1259
GlaI GCGC 1 cut(s) 1282
GluI GCNGC 8 cut(s) 51, 54, 279, 399, 591, 961, 1155, 1185
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 2 cut(s) 106, 220
HapII CCGG 1 cut(s) 1142
HhaI GCGC 1 cut(s) 1283
Hin6I GCGC 1 cut(s) 1281
HinP1I GCGC 1 cut(s) 1281
HindIII AAGCTT 1 cut(s) 597
HinfI GANTC 3 cut(s) 267, 668, 1333
HpaII CCGG 1 cut(s) 1142
Hpy166II GTNNAC 3 cut(s) 18, 415, 992
Hpy188I TCNGA 5 cut(s) 24, 111, 518, 673, 945
Hpy188III TCNNGA 3 cut(s) 826, 1037, 1337
Hpy8I GTNNAC 3 cut(s) 18, 415, 992
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 4 cut(s) 535, 622, 640, 1136
HpyCH4III ACNGT 3 cut(s) 412, 559, 1136
HpyCH4IV ACGT 1 cut(s) 531
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 59, 217, 487, 596, 1008, 1181, 1287, 1302
HpyF3I CTNAG 6 cut(s) 21, 222, 431, 580, 1056, 1291
HpySE526I ACGT 1 cut(s) 531
HspAI GCGC 1 cut(s) 1281
KflI GGGWCCC 1 cut(s) 1025
KpnI GGTACC 2 cut(s) 755, 842
Kzo9I GATC 7 cut(s) 339, 343, 352, 404, 469, 507, 1215
LguI GCTCTTC 1 cut(s) 869
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 8 cut(s) 62, 65, 265, 385, 602, 972, 1141, 1171
LweI GCATC 4 cut(s) 522, 914, 949, 1247
MaeI CTAG 3 cut(s) 503, 720, 1259
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 2 cut(s) 553, 856
MalI GATC 7 cut(s) 341, 345, 354, 406, 471, 509, 1217
MboI GATC 7 cut(s) 339, 343, 352, 404, 469, 507, 1215
MfeI CAATTG 2 cut(s) 843, 1179
MmeI TCCRAC 2 cut(s) 218, 244
MseI TTAA 3 cut(s) 174, 834, 1375
MslI CAYNNNNRTG 2 cut(s) 497, 896
MspA1I CMGCKG 1 cut(s) 963
MspI CCGG 1 cut(s) 1142
MspR9I CCNGG 1 cut(s) 1142
MunI CAATTG 2 cut(s) 843, 1179
MvnI CGCG 2 cut(s) 371, 763
MwoI GCNNNNNNNGC 9 cut(s) 50, 59, 217, 487, 596, 1008, 1181, 1287, 1302
NciI CCSGG 1 cut(s) 1142
NdeI CATATG 1 cut(s) 875
NdeII GATC 7 cut(s) 339, 343, 352, 404, 469, 507, 1215
NlaIV GGNNCC 7 cut(s) 437, 753, 840, 892, 1026, 1027, 1146
NmuCI GTSAC 1 cut(s) 553
NspI RCATGY 3 cut(s) 16, 454, 1205
NspV TTCGAA 1 cut(s) 867
OliI CACNNNNGTG 1 cut(s) 896
PceI AGGCCT 1 cut(s) 106
PciI ACATGT 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 869
PcsI WCGNNNNNNNCGW 3 cut(s) 339, 348, 540
PfeI GAWTC 3 cut(s) 267, 668, 1333
PkrI GCNGC 8 cut(s) 52, 55, 280, 400, 592, 962, 1156, 1186
Ple19I CGATCG 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 1025
PscI ACATGT 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 1025
PspN4I GGNNCC 7 cut(s) 437, 753, 840, 892, 1026, 1027, 1146
PspPI GGNCC 3 cut(s) 725, 1025, 1144
PspPPI RGGWCCY 1 cut(s) 1025
PstI CTGCAG 2 cut(s) 403, 962
PvuI CGATCG 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 963
RsaI GTAC 4 cut(s) 586, 753, 840, 1343
RsaNI GTAC 4 cut(s) 585, 752, 839, 1342
RseI CAYNNNNRTG 2 cut(s) 497, 896
SapI GCTCTTC 1 cut(s) 869
SaqAI TTAA 3 cut(s) 174, 834, 1375
SatI GCNGC 8 cut(s) 51, 54, 279, 399, 591, 961, 1155, 1185
Sau3AI GATC 7 cut(s) 339, 343, 352, 404, 469, 507, 1215
Sau96I GGNCC 3 cut(s) 725, 1025, 1144
ScrFI CCNGG 1 cut(s) 1142
SfaNI GCATC 4 cut(s) 522, 914, 949, 1247
SfcI CTRYAG 2 cut(s) 399, 958
SfuI TTCGAA 1 cut(s) 867
SinI GGWCC 3 cut(s) 725, 1025, 1144
SmiMI CAYNNNNRTG 2 cut(s) 497, 896
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 6 cut(s) 131, 297, 369, 713, 1011, 1296
SspMI CTAG 3 cut(s) 503, 720, 1259
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 1140
StyI CCWWGG 1 cut(s) 1228
TaaI ACNGT 3 cut(s) 412, 559, 1136
TaiI ACGT 1 cut(s) 534
TaqI TCGA 4 cut(s) 7, 342, 351, 867
TatI WGTACW 1 cut(s) 1341
TfiI GAWTC 3 cut(s) 267, 668, 1333
Tru1I TTAA 3 cut(s) 174, 834, 1375
Tru9I TTAA 3 cut(s) 174, 834, 1375
TscAI CASTG 2 cut(s) 88, 100
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 8 cut(s) 50, 53, 278, 398, 590, 960, 1154, 1184
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 6 cut(s) 242, 620, 656, 723, 1006, 1243
TspGWI ACGGA 1 cut(s) 844
TspRI CASTG 2 cut(s) 88, 100
VpaK11BI GGWCC 3 cut(s) 725, 1025, 1144
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 4 cut(s) 135, 315, 1047, 1357
XceI RCATGY 3 cut(s) 16, 454, 1205
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 3 cut(s) 503, 720, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.